Heatmap: Cluster_208 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots
Roots (Meristematic zone)
Roots (Differentiation zone)
Roots (Elongation zone)
Hypocotyl
Leaves
Meristem (Vegetative)
Apical Meristem
Floral Buds
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Style (1d before flowering)
Style (1d after flowering)
Style+pollen (1d after flowering)
Pollen (Germinated)
Pollen (Mature/Ungerminated)
Fruits (Breaker stage)
Fruits (Mature green)
Pericarp/Exocarp (4d Post Anthesis)
Pericarp (5d Post Anthesis)
Pericarp (7d Post Anthesis)
Pericarp (10d Post Anthesis)
Pericarp
Seeds (5d Post Anthesis)
Seeds (7d Post Anthesis)
Seeds (10d Post Anthesis)
Septum/Seed (4d Post Anthesis)
Septum (7d Post Anthesis)
Septum (10d Post Anthesis)
Seedling (Leaves)
Seedling (Roots)
Solyc00g111770.1.1 (Solyc00g111770.1)
- - - - - - - - - - - -2.41 - 3.39 - - - - - - - -1.25 -1.03 -1.37 -2.63 - 3.44 2.47 0.4 0.6 1.39 - - -
Solyc00g111780.2.1 (Solyc00g111780.2)
- - - - - - - - - - - - - 4.33 - - - - - - - -2.7 -0.07 -2.86 -2.98 - 2.66 1.86 -1.53 -0.16 0.11 -2.04 - -
Solyc01g009635.1.1 (Solyc01g009635.1)
- - - - -3.23 -3.66 - - - - - - -2.78 -3.66 - - - - - - - -1.15 -0.77 -1.52 0.03 - 4.34 2.55 -2.9 0.16 1.94 - - -
Solyc01g009640.2.1 (Solyc01g009640.2)
- - - - - - - - - - - - - - - - - - - - - -0.15 -0.46 -0.4 - - 4.37 2.49 -0.46 1.45 0.86 - - -
Solyc01g066207.1.1 (Solyc01g066207.1)
- - - - - - - - - 2.56 - - - 3.69 - - - 1.7 - - - - - - - - 1.49 1.58 2.62 - - - - -
Solyc01g080783.1.1 (Solyc01g080783.1)
- - - - - - - - - - - - - 4.99 - - - - - - - - - - - - - -0.46 - - - 0.56 - -
Solyc01g100680.1.1 (Solyc01g100680.1)
- -3.02 - -2.86 -2.28 -1.9 - - - - - - - 2.41 - - - - - - - -3.95 -1.16 -2.16 -2.65 - 4.48 1.37 -0.89 -1.85 0.35 - -4.36 -
Solyc01g108380.2.1 (Solyc01g108380.2)
- - - - -4.26 - - - - -2.73 -3.73 - -0.78 3.04 - - - - - - - -1.85 -0.07 -1.04 - - 4.21 1.22 -2.65 -1.32 0.89 - - -
Solyc02g024047.1.1 (Solyc02g024047.1)
- - - - - - - - - - - - - 3.91 - - - 4.25 - - - - - - - - - - - - - - - -
Solyc02g078690.2.1 (Solyc02g078690.2)
-1.41 - -7.46 - 0.68 -3.0 - -0.5 1.0 1.73 -0.48 -1.9 1.57 3.53 -5.46 -7.29 -5.07 - -8.94 -7.38 -3.25 -0.06 0.99 0.73 0.31 -4.88 -1.3 -1.56 -1.59 -1.0 -0.07 -0.45 -7.99 0.09
Solyc02g078760.1.1 (Solyc02g078760.1)
-2.62 -3.03 -1.93 -0.66 0.79 -0.96 -1.94 -0.7 0.1 -2.12 1.82 1.65 1.5 2.9 -0.26 -2.18 -2.02 -8.94 -9.65 -6.82 -2.41 0.13 0.41 0.23 -0.25 -8.7 -0.26 -0.75 -0.72 -0.21 0.26 -0.79 -0.73 -2.06
Solyc02g079120.1.1 (Solyc02g079120.1)
- - - - -2.14 - - - - - - - -3.35 -1.22 - - - - - - - -0.7 0.1 -1.33 -0.86 - 4.16 2.24 2.23 -0.36 1.03 -1.25 - -4.15
Solyc02g082615.1.1 (Solyc02g082615.1)
-0.35 -1.96 0.09 -0.85 -0.53 -0.89 0.61 -0.97 0.83 1.93 -0.55 -2.13 2.16 1.27 0.03 0.25 -0.09 -1.5 -7.72 -3.6 -0.49 -0.53 -1.03 -0.55 -0.93 -0.2 0.62 0.43 0.13 -0.32 0.03 -0.2 -5.05 -1.34
Solyc02g085630.3.1 (Solyc02g085630.3)
-2.76 -3.25 -7.03 -10.32 -3.11 -4.6 -7.41 -9.31 -0.95 0.42 1.54 2.46 2.91 3.77 -2.13 -6.91 -3.03 - - -5.89 -3.65 -6.83 -12.19 -4.53 -6.18 -2.9 -5.85 -5.82 -4.34 -4.42 -3.48 -3.48 -11.22 0.17
Solyc02g086020.1.1 (Solyc02g086020.1)
- - - - - - - - - - - - -2.86 -2.74 - - - - - - -1.88 -0.75 0.14 -2.94 -3.12 0.43 4.64 2.23 -3.64 - -1.32 - - -
Solyc02g088180.3.1 (Solyc02g088180.3)
0.68 -6.46 -1.01 -5.22 -3.05 0.01 -7.26 -3.76 0.09 1.4 1.72 2.13 2.09 2.95 -0.79 -1.21 0.54 -9.48 -9.66 -4.43 -3.47 -5.23 -3.34 -3.16 -6.09 -3.61 -7.52 -5.34 -6.33 -6.01 -3.67 -2.14 -4.76 2.0
Solyc02g090395.1.1 (Solyc02g090395.1)
0.01 - - - - -2.66 - - 1.14 - -1.97 -2.14 3.44 3.28 - 1.64 -0.25 - - -1.81 - -0.67 - -1.31 -2.69 - 0.47 - -1.31 - - -0.62 - 0.74
Solyc02g090720.3.1 (Solyc02g090720.3)
-0.99 0.68 -7.13 -2.48 1.4 -2.29 1.18 -0.43 1.08 -2.64 -2.03 1.55 0.45 3.41 -4.21 - - - - -5.46 -7.15 -1.96 0.54 -1.01 -2.05 - 1.27 -0.25 -0.49 -1.42 -0.24 -3.56 -2.83 -0.91
Solyc03g112490.1.1 (Solyc03g112490.1)
- - - - - - - - - - -1.96 - 1.02 1.15 - - - - - - - -1.42 -0.06 -1.3 -2.21 - 4.27 1.95 1.54 -1.45 -0.14 -2.05 - -
Solyc03g121740.2.1 (Solyc03g121740.2)
- -3.78 - - - -5.56 - - 1.49 0.51 - -3.33 3.07 3.9 -1.26 - -4.95 - - - - -3.64 -1.75 -2.48 -2.51 - 0.41 -1.52 1.13 - -0.2 -1.48 - -
Solyc03g121745.1.1 (Solyc03g121745.1)
- - - - - - - - 0.88 0.16 0.74 - 3.25 4.05 -1.65 - - - - - - - - - -0.84 - -1.22 -1.58 0.53 - -2.28 - - -
Solyc04g080410.2.1 (Solyc04g080410.2)
- - - - - -0.83 - - - - 1.07 - 3.52 4.31 - - - - - - - - - - - - - - - - - - - -
Solyc04g081270.1.1 (Solyc04g081270.1)
-3.93 -0.39 -4.09 -2.94 -3.28 -1.31 -3.09 -0.75 -0.11 0.97 0.5 0.2 0.57 2.94 2.06 1.53 1.28 - - -1.64 -0.83 -0.69 -0.85 -0.93 -1.49 -2.14 -2.19 -1.59 -2.14 0.15 0.32 0.1 -3.14 -2.54
Solyc05g005420.2.1 (Solyc05g005420.2)
- - - - - - - - - - - - - 5.09 - - - - - - - - - - - - - - - - - - - -
Solyc05g014177.1.1 (Solyc05g014177.1)
- - - -2.69 - -2.21 - - -2.93 -3.13 -3.13 - - 0.04 -3.29 -3.43 -3.62 - - - - 0.21 -0.53 -0.67 -0.18 - 4.15 2.17 -1.13 1.12 1.72 -1.96 - -2.57
Solyc05g018185.1.1 (Solyc05g018185.1)
1.99 -4.29 -3.01 - - -2.94 -1.22 - - -2.27 - -5.53 -2.74 -0.54 -3.47 - - -4.12 - - - -1.11 -0.19 -1.08 -1.24 - 4.26 1.55 -0.61 0.18 0.56 -2.88 - -1.27
Solyc05g032740.1.1 (Solyc05g032740.1)
- - - - - - - - - - - - - 5.09 - - - - - - - - - - - - - - - - - - - -
Solyc05g051090.1.1 (Solyc05g051090.1)
- - - - - - - - - - - - 1.12 4.55 - - - - 1.72 - - - - - - - 1.57 1.14 - - - - - -
Solyc05g054290.1.1 (Solyc05g054290.1)
- - - - -2.11 -2.56 - -3.71 -2.86 - -4.8 -3.39 - 0.56 - - - - - - - -3.43 0.2 -1.41 -1.44 - 4.59 1.17 -1.75 -1.8 1.55 - - -
Solyc06g067930.2.1 (Solyc06g067930.2)
- - - - - -5.0 - - - - - - -1.95 1.7 - - - - - - - -1.59 -1.76 -1.96 -1.63 - 4.41 0.82 -2.92 -0.18 0.11 - - 2.04
Solyc06g083170.3.1 (Solyc06g083170.3)
0.09 -1.16 -0.06 -0.05 -0.67 -1.45 -0.63 -1.47 -0.16 -0.41 -1.69 -0.88 1.28 2.77 -1.48 -2.6 -1.45 - - -6.0 -2.31 -0.11 -0.08 -0.1 -0.32 -5.27 1.41 1.1 0.29 0.39 0.45 0.12 -4.26 1.16
Solyc06g083400.2.1 (Solyc06g083400.2)
-1.4 - -2.43 - - -2.04 - - -2.55 -2.77 - - -1.49 0.42 -1.57 - -2.04 - - - -2.11 -2.26 -0.7 -2.02 -0.88 -0.83 4.26 2.05 -1.07 -0.77 1.63 -4.86 - -0.61
Solyc07g006440.1.1 (Solyc07g006440.1)
- - - - -1.79 - - - - - -1.66 -2.36 -0.15 2.82 - - - - - - - - -0.39 -1.21 -2.44 - 3.76 2.37 -0.88 0.82 1.49 - - -
Solyc07g008367.1.1 (Solyc07g008367.1)
- - - - - - - - -1.87 -2.07 - - 0.33 3.0 - - - - - - - 0.36 -0.96 -1.17 0.03 - 2.47 2.33 0.09 2.07 2.37 - - -
Solyc07g062350.2.1 (Solyc07g062350.2)
- - - - - -6.29 - - - - - - - 4.08 - - - - - - - -0.84 -3.96 -1.97 -0.79 - 3.1 1.73 -0.26 0.66 0.41 - - -
Solyc07g064070.2.1 (Solyc07g064070.2)
-3.47 -0.9 -1.08 -0.76 - -2.51 - - -1.47 2.84 -1.48 -5.26 3.33 3.01 -0.91 -0.28 -1.89 -0.46 -2.71 -1.89 -4.09 - - -4.6 -3.65 0.97 -4.62 -3.28 -2.06 - -4.83 -1.68 - -1.32
Solyc08g005830.2.1 (Solyc08g005830.2)
- -3.16 - - - - - - - -6.11 - - -6.55 -0.93 - - - - - - - -2.14 -0.11 -1.39 -0.49 - 4.11 1.92 2.75 0.04 0.48 -0.16 - -8.65
Solyc08g048320.1.1 (Solyc08g048320.1)
- - - - - - - - - - - - - 5.09 - - - - - - - - - - - - - - - - - - - -
Solyc08g061692.1.1 (Solyc08g061692.1)
- - - - - - - - - - - - - 5.09 - - - - - - - - - - - - - - - - - - - -
Solyc08g075353.1.1 (Solyc08g075353.1)
- - -2.93 -2.04 - -6.64 - -2.93 -3.14 0.71 - -3.34 1.16 2.19 1.25 1.98 1.6 - - -4.1 - -1.21 -0.84 -1.65 -1.44 -1.92 2.7 1.84 -0.89 0.47 -0.01 -2.31 -2.77 -2.82
Solyc08g082770.3.1 (Solyc08g082770.3)
-10.35 - - - -8.25 -10.2 -10.77 - 1.89 -1.4 -0.01 -1.35 -1.7 2.72 -0.02 -1.01 -0.54 - -11.68 -9.01 -1.29 0.57 -0.6 1.09 1.62 -2.32 1.35 1.19 1.2 0.68 0.34 0.55 - -
Solyc09g009730.1.1 (Solyc09g009730.1)
- - - - - - - - - - - - - - - - - - - -2.94 - -2.01 0.23 -2.82 -2.05 - 4.77 1.64 -2.93 -1.36 0.25 - - -
Solyc09g014390.1.1 (Solyc09g014390.1)
- - - - - -8.09 - - - - - - -1.9 1.72 - - - -5.92 -5.74 - - -2.01 -0.07 -0.64 -1.27 - 4.29 1.47 -2.78 0.24 2.15 - - -
Solyc09g061910.2.1 (Solyc09g061910.2)
- - - - - - - - - - - - - -0.04 - - - - - - - - -1.38 -3.29 -1.76 - 4.38 1.19 2.37 - 1.33 0.54 - -
Solyc09g091300.1.1 (Solyc09g091300.1)
- - - - - - - - -5.39 -3.37 -7.58 -3.75 -1.0 3.54 -6.51 -7.78 - - - -10.0 - -2.75 -0.29 -1.75 -1.55 - 3.81 1.9 -2.31 -0.7 0.6 -6.81 - -
Solyc09g091360.1.1 (Solyc09g091360.1)
- - - - - - - - - - - - - - - - 2.06 - - - - -0.72 0.49 -2.66 -0.3 - 4.39 1.03 -2.41 0.9 0.8 - - -
Solyc10g005160.1.1 (Solyc10g005160.1)
- - - - -3.02 -4.56 - - - - - - - 0.9 - - - - - - - -2.23 -2.7 -2.23 -3.03 - 4.64 2.18 -2.96 -0.32 -0.09 - - -
Solyc10g078350.2.1 (Solyc10g078350.2)
-1.05 -0.0 -0.47 -1.6 0.22 -0.68 -0.05 -0.45 -1.29 -1.36 -0.46 0.62 1.4 4.17 -3.44 -3.4 -2.54 - - -4.02 -1.61 -2.06 -0.85 -1.93 -2.18 -4.37 -1.31 -2.33 -0.98 -4.7 -1.72 -3.13 -3.98 -0.79
Solyc11g006800.2.1 (Solyc11g006800.2)
- - - - - - - - - 4.02 - - 1.36 2.99 - - - - - - - - - -0.91 -1.46 - 1.11 0.45 -0.2 - 0.97 - - -
Solyc12g011240.1.1 (Solyc12g011240.1)
- - - - - -2.24 - - -1.85 - -2.04 -0.93 - - - - - - - - - -1.5 -0.82 -2.3 -1.07 - 4.6 2.05 -2.63 -0.68 0.97 - - -
Solyc12g011260.2.1 (Solyc12g011260.2)
- - - - -1.67 -4.09 - - - - - - - - - - - - - - - -3.33 -0.11 -1.23 - - 4.61 2.04 0.36 -0.12 0.49 -3.46 - -
Solyc12g013665.1.1 (Solyc12g013665.1)
-3.09 - - - -6.17 -2.51 - - -5.93 -3.38 -3.94 -2.21 1.97 4.6 -5.45 -6.5 - - - -3.82 - -6.33 -3.27 -5.08 -4.8 -2.25 1.6 -0.21 -4.33 -1.95 -1.83 -6.7 - -2.86
Solyc12g013760.1.1 (Solyc12g013760.1)
- - - - - -5.0 - - - - - -4.59 0.16 4.11 - - - - - - - -1.6 -1.77 -2.45 -0.78 -0.69 3.2 1.26 -2.84 -1.14 0.24 -2.87 - -
Solyc12g013770.2.1 (Solyc12g013770.2)
- - - - - -4.93 -8.94 - -5.53 -1.43 - -8.34 0.95 3.61 - -4.63 -5.15 - - -8.17 -4.39 -3.05 -0.64 -1.82 -2.08 -1.11 3.52 1.79 -2.19 -0.32 0.68 - - -6.86
Solyc12g016170.1.1 (Solyc12g016170.1)
- - - - - - - - - - - 0.4 0.62 4.18 - - - - - - - -0.47 - -2.45 - - 3.31 0.86 -1.19 - - - - -
Solyc12g016180.1.1 (Solyc12g016180.1)
- - - - - -3.22 - - - - - - 1.61 4.06 - - - - - - - - - -0.26 - - 3.42 0.09 - -0.46 -0.25 - - -
Solyc12g017300.1.1 (Solyc12g017300.1)
- - - - - 0.26 - - - - 0.35 - - 4.14 - - - - - - - - - -0.16 - - 3.0 -0.23 -1.7 - 1.93 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.