Heatmap: Cluster_222 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots
Roots (Meristematic zone)
Roots (Differentiation zone)
Roots (Elongation zone)
Hypocotyl
Leaves
Meristem (Vegetative)
Apical Meristem
Floral Buds
Flowers
Ovary wall/pericarp (0-1 DPA)
Ovary wall/pericarp (2 & 5 DPA)
Ovule (0-1 DPA)
Ovule (2 & 5 DPA)
Style (1d before flowering)
Style (1d after flowering)
Style+pollen (1d after flowering)
Pollen (Germinated)
Pollen (Mature/Ungerminated)
Fruits (Breaker stage)
Fruits (Mature green)
Pericarp/Exocarp (4d Post Anthesis)
Pericarp (5d Post Anthesis)
Pericarp (7d Post Anthesis)
Pericarp (10d Post Anthesis)
Pericarp
Seeds (5d Post Anthesis)
Seeds (7d Post Anthesis)
Seeds (10d Post Anthesis)
Septum/Seed (4d Post Anthesis)
Septum (7d Post Anthesis)
Septum (10d Post Anthesis)
Seedling (Leaves)
Seedling (Roots)
Solyc01g005360.3.1 (Solyc01g005360.3)
- - - - - -1.99 - - 3.57 4.29 - - - - -2.1 -3.29 -1.57 -0.09 -0.76 - - - - -6.15 - - - - - - - - -7.22 -
Solyc01g006440.2.1 (Solyc01g006440.2)
0.1 - - - -4.14 -4.91 -6.69 -4.85 3.16 4.32 -4.94 - -3.54 -2.36 -2.35 -5.23 - -0.83 -1.62 -6.88 -4.82 -3.73 - -7.39 -4.48 - -4.91 -1.28 -1.22 -2.43 -3.79 -3.71 - 0.22
Solyc01g008590.1.1 (Solyc01g008590.1)
- - - - - -0.69 - - 3.71 - - - - - - - - - - - - - 1.19 2.6 3.43 - - - 0.15 - - - - -
Solyc01g010415.1.1 (Solyc01g010415.1)
- - - - -1.86 -1.8 - - 2.66 3.99 - - - - - - -1.34 2.78 1.7 - - - - - - - - - - - - - - -0.55
Solyc01g056440.1.1 (Solyc01g056440.1)
- - - - - -4.36 - - 2.19 4.65 - - - - - - - 0.78 1.2 - - - - - - - - - -2.35 - - - - -
Solyc01g057190.1.1 (Solyc01g057190.1)
- - - - - - - - 3.07 3.86 - - - - -1.75 - -2.31 2.62 2.15 - - - - - - - - - - - - - - -
Solyc01g087070.3.1 (Solyc01g087070.3)
-0.37 -0.81 -5.05 -2.33 -1.97 -1.48 -1.32 -3.32 2.94 3.54 -4.32 -3.58 -2.25 -1.45 -1.87 -4.1 -1.65 0.89 1.73 -2.63 -2.0 -2.39 -1.8 -1.9 -2.14 -2.86 -0.49 -0.84 -1.09 -1.84 -1.67 -2.44 -4.09 0.48
Solyc02g084670.3.1 (Solyc02g084670.3)
-4.66 -3.39 -3.3 -2.77 -5.53 -5.85 -4.2 -5.13 3.04 4.39 -5.49 -3.73 -4.38 -3.99 -2.44 -4.15 -2.63 0.7 0.11 -4.3 -3.49 -3.68 -5.7 -4.66 -4.88 -6.39 -4.98 -4.45 -4.06 -4.0 -4.06 -4.02 -9.74 -1.33
Solyc02g085150.3.1 (Solyc02g085150.3)
-5.2 -6.59 -4.47 -8.51 -2.82 -1.13 -4.42 -4.08 3.25 3.92 -7.77 -5.27 -8.6 -9.56 0.3 -0.63 -0.89 -1.66 -2.32 -0.48 2.1 -5.63 -3.3 -6.03 -5.89 -2.56 -6.51 -6.37 -4.21 -7.43 -5.87 -5.05 -5.28 -4.65
Solyc02g091130.3.1 (Solyc02g091130.3)
-4.15 -5.66 -6.01 - -5.25 -4.99 -0.92 -4.7 2.7 3.74 -4.93 -3.85 -3.7 -4.43 -0.56 -1.62 -1.67 0.21 0.82 -0.2 -0.81 -0.33 -2.39 -1.06 0.36 -1.17 -2.28 -1.4 -0.88 -0.44 -1.07 0.96 - -4.79
Solyc03g006200.2.1 (Solyc03g006200.2)
- - - - - - - - 4.18 3.49 - - - - -2.8 - -1.21 1.16 0.87 -4.19 - - - - - - - - - - - - - -
Solyc03g045083.1.1 (Solyc03g045083.1)
- - - - - -1.08 -2.87 - 2.24 4.5 - -1.27 - - -1.37 - -1.8 0.0 1.9 - - - - - - - - -2.5 - - - - - -
Solyc03g070457.1.1 (Solyc03g070457.1)
-4.0 - - - - -3.5 - - 1.13 3.76 - - - - 1.44 2.27 1.06 2.44 1.54 - -3.63 - - - - - - - - - - - - -5.16
Solyc03g119410.1.1 (Solyc03g119410.1)
- - - - - -2.66 -2.58 -2.16 4.14 2.91 - - - -3.14 -0.55 -2.57 -1.42 1.75 0.87 - - -3.57 -4.1 -2.91 -2.04 - -1.92 -2.47 -1.59 -3.38 -3.13 -2.15 - -
Solyc05g005820.3.1 (Solyc05g005820.3)
- - - - -9.43 -10.99 - -8.74 3.99 3.5 -10.19 - -8.35 - -2.37 -4.25 -2.3 2.32 0.34 -7.58 -6.27 - - - -9.82 -7.25 - - - - - -9.52 - -10.73
Solyc05g008710.1.1 (Solyc05g008710.1)
- - - - - - - - 3.61 4.23 - - -0.41 -1.21 - - -0.06 - - - - - - -3.69 - - -0.36 - - - - - - -
Solyc05g008740.1.1 (Solyc05g008740.1)
- - - - - - - - 2.63 3.78 - - - - -1.72 -4.15 -0.88 2.63 2.8 -4.8 - - - - - - - - - - - - - -
Solyc05g051250.3.1 (Solyc05g051250.3)
-8.48 - -3.86 -4.18 -5.54 -2.38 -6.13 -1.95 3.06 2.68 -4.28 -4.51 -4.59 -3.14 -2.38 -4.29 -2.07 2.2 1.75 -8.58 -7.95 -2.06 -1.07 -1.98 -2.38 - 0.29 1.25 1.97 -0.62 -1.37 -2.79 -9.46 -3.99
Solyc05g051980.3.1 (Solyc05g051980.3)
- - - - - -4.8 - - 3.17 4.22 -4.14 - -4.13 - -1.29 -4.44 -1.25 1.57 1.11 -3.36 -4.02 - - - - - - -6.68 - - - - - -4.68
Solyc05g052330.2.1 (Solyc05g052330.2)
- - - - - - - - 3.53 2.93 -5.85 - - - -3.3 - -0.86 3.36 1.96 - - - - - -5.78 - - - - - - - - -
Solyc06g005180.1.1 (Solyc06g005180.1)
-4.85 - - - - -1.38 -7.4 -0.95 3.24 3.44 -6.47 -6.67 -4.02 -6.68 -2.23 - -3.04 3.05 1.85 - - - - - - - -6.25 - - - - - -1.23 -
Solyc06g007500.2.1 (Solyc06g007500.2)
-4.72 1.85 -0.92 -1.54 -7.82 -5.67 -8.33 -6.13 2.86 4.2 - - -5.9 - -2.08 -3.17 -1.65 1.05 -0.22 -7.52 -6.46 -5.12 -6.42 -7.62 -6.5 - -5.58 -5.92 -5.97 -5.49 -5.45 -7.19 - -4.46
Solyc06g061260.1.1 (Solyc06g061260.1)
- -3.57 - - -2.0 -4.85 - - 3.35 3.59 - - - - -1.4 - - 2.87 1.91 - - - - - - - - - - - - - - -
Solyc06g068700.3.1 (Solyc06g068700.3)
-0.31 -1.42 0.08 2.44 -2.25 -2.6 -0.97 -2.12 2.4 2.81 -2.6 -2.38 -0.38 -1.04 0.73 -0.18 -0.34 -0.09 1.14 -4.29 -2.31 -1.79 -1.58 -1.25 -1.44 -5.76 -0.76 -0.94 -0.81 -1.94 -2.02 -2.72 -5.14 -0.28
Solyc06g075280.3.1 (Solyc06g075280.3)
-6.76 - -6.28 - -2.11 -1.41 - -1.75 3.38 3.95 - -4.44 - -7.77 -1.67 -4.55 -1.21 1.51 1.31 -5.49 -4.34 -2.55 -3.36 -3.9 -4.05 -3.88 -4.68 -5.14 -5.74 -2.95 -3.0 -4.44 -5.22 -5.63
Solyc06g075290.3.1 (Solyc06g075290.3)
-3.92 - - - - -5.72 - -4.07 2.88 4.15 -4.89 -6.38 -5.52 -6.39 -1.11 -3.55 -1.29 2.24 1.51 -8.3 - -6.05 -6.61 -8.49 -7.05 - - -6.15 -6.6 - -4.91 -6.66 -6.15 -6.31
Solyc06g082130.3.1 (Solyc06g082130.3)
-6.25 -3.21 - -5.4 - -4.17 -3.88 -5.4 3.24 4.36 -6.32 -5.94 -5.16 -5.75 -1.72 -3.82 -2.12 0.46 0.5 -4.72 -5.85 -5.31 - -5.69 -5.9 - -6.91 -7.11 -5.59 - -5.91 -4.42 - -5.31
Solyc07g014660.2.1 (Solyc07g014660.2)
- - - - -4.79 -0.66 - - 3.19 2.99 -3.69 - -2.42 -5.06 -4.35 - -3.88 3.39 2.01 - -3.14 -4.83 - -6.65 -2.61 - -2.78 -2.34 -0.75 -4.3 - -4.5 -5.59 -
Solyc07g024030.3.1 (Solyc07g024030.3)
- - -4.4 - - - - - 2.66 4.42 -6.55 - -6.72 - -2.02 -3.97 -3.35 1.83 1.22 - - - - - - - - - - - - - - -
Solyc08g005110.1.1 (Solyc08g005110.1)
- - - - - -3.92 - - 3.41 4.16 -4.09 - - - -1.05 - -2.93 1.78 0.35 - - - - - - - - - - - - - - -4.73
Solyc09g009750.2.1 (Solyc09g009750.2)
- - - - - -8.16 -3.9 - 3.26 4.42 - - -6.96 - -2.64 -5.29 -2.33 0.83 -0.44 -5.16 -4.33 - - - -7.61 - - - - - - - - -
Solyc09g009930.2.1 (Solyc09g009930.2)
-1.47 -2.55 -1.35 -1.38 -6.04 -5.63 - - 3.49 4.18 -4.9 - -3.61 -5.72 -2.56 -3.69 -2.25 -0.42 -1.26 -5.26 - - - - -7.24 - - -8.33 -3.98 - - - - 0.47
Solyc09g048990.3.1 (Solyc09g048990.3)
- -6.26 -6.88 -5.15 -2.31 -3.78 - - 3.31 3.81 - - -4.76 -5.31 -1.06 -2.24 -1.6 2.09 2.09 -7.86 -4.93 -7.65 -7.03 -9.16 -8.78 - -7.16 -8.54 -6.42 -6.99 -5.42 -7.01 -8.67 -5.23
Solyc09g055250.3.1 (Solyc09g055250.3)
-6.39 - - - - - - - 3.27 4.04 -6.65 - - -7.96 -1.86 -6.31 -0.54 2.19 1.17 - -4.9 - - - - - - -9.2 - - - - - -
Solyc09g090590.3.1 (Solyc09g090590.3)
-4.12 - -0.87 -2.94 -3.68 -3.8 - - 4.03 3.34 - - -4.01 -3.97 -3.75 - -0.63 1.96 0.81 -4.14 -3.51 - - -5.2 - - - - - - - - - -
Solyc09g092210.3.1 (Solyc09g092210.3)
- - - - - -7.17 - - 3.63 3.97 - - - - -1.67 -4.46 -2.33 1.89 0.68 -7.5 -6.11 -8.86 -8.39 - -9.48 - - -8.87 -8.75 -8.33 - - -7.97 -
Solyc10g018460.1.1 (Solyc10g018460.1)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Solyc10g019100.2.1 (Solyc10g019100.2)
- - - - - - - - - - - - 1.16 - 2.62 - - 2.86 1.88 - - 0.94 - - - 2.57 1.36 -0.2 - 1.77 - - - -
Solyc10g054170.2.1 (Solyc10g054170.2)
- - - - - - - - 3.4 4.14 - - - - - - - 2.2 - - - - - - - - - -0.14 -1.68 - - - - -
Solyc10g062110.2.1 (Solyc10g062110.2)
- - - -2.59 - - - - 3.02 4.46 - - - - -2.26 - -1.98 1.2 -0.05 - - - - - - - - -5.47 - - - - - -
Solyc11g008400.2.1 (Solyc11g008400.2)
- - - - - - - - 3.65 4.35 - - - - -2.11 -5.42 -3.09 -1.69 -1.52 -8.59 -7.96 - - - - - - - - - - - - -
Solyc11g022615.1.1 (Solyc11g022615.1)
- - - - - - - - 1.92 4.64 - - -2.4 - - - -0.48 1.44 0.48 - - - - - - - - -2.01 - - - - - -
Solyc11g027981.1.1 (Solyc11g027981.1)
- - - - - - - - 3.02 4.39 - - - - 0.9 - - -0.82 -0.08 - - - - - - - - - -1.21 - 0.17 - - -
Solyc12g006090.1.1 (Solyc12g006090.1)
-2.79 - - - -2.4 -3.02 - - 3.68 2.8 - - - - -2.92 -2.58 -1.73 3.33 1.59 - - - - - -6.08 - - - -5.02 - - - - -3.84
Solyc12g017310.2.1 (Solyc12g017310.2)
- - - - -5.8 - - -5.19 3.49 4.25 - - - - -1.87 -5.57 -1.38 0.76 0.21 -4.63 -4.48 - - - - -3.2 - - - - - - - -
Solyc12g062850.1.1 (Solyc12g062850.1)
- - - - - -1.74 - - 4.11 - 0.61 - - - - - - 2.83 1.97 - - - - - - - 1.96 - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.