Heatmap: Cluster_126 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo100679 (PACid_15401892)
- - - - - - - - - - - - 1.62 - - - - 2.71 - - - - 1.45 1.43 - - 3.43 - 2.62 - - -
Smo10115 (PACid_15419594)
-1.01 -1.64 -1.65 -2.27 -5.23 -2.28 -3.35 -1.07 -3.72 -3.06 -2.29 -2.59 -1.11 -2.7 - 0.37 -1.44 -2.43 0.23 -3.16 0.46 - 0.09 1.69 2.17 1.84 2.46 -0.27 0.4 0.39 0.91 -0.08
Smo102601 (PACid_15407441)
-1.61 -1.86 -1.62 -2.01 -1.41 -1.27 -1.48 -1.37 -1.74 -2.12 -2.37 -2.52 -3.02 -0.61 -1.54 1.45 -0.99 1.8 1.25 -2.94 -4.2 -2.87 -2.08 -0.32 -3.39 -0.56 2.71 0.72 0.88 -0.23 0.35 1.95
Smo110494 (PACid_15407475)
- - - - - - - -3.34 -5.71 - -2.72 -5.85 -1.74 - - 1.89 -0.72 3.37 1.59 - - - - 0.34 -3.57 -2.3 2.29 0.31 1.61 -0.17 -2.37 0.96
Smo121067 (PACid_15414706)
-3.96 -3.76 -3.41 -3.73 -3.06 -3.19 -3.09 -2.78 -3.47 -4.41 -4.71 -4.94 -7.86 -6.15 -4.92 0.64 -0.39 1.71 2.32 -1.33 - -1.99 -3.71 0.04 -1.64 -0.33 3.08 1.35 1.02 0.19 -1.11 1.5
Smo121210 (PACid_15416057)
-1.17 -0.56 - - 1.3 0.39 - 0.62 0.2 - -1.18 -0.68 - -0.56 -0.46 -0.54 -0.94 -1.18 1.99 - - - -1.53 -0.02 - 1.56 2.4 2.38 -1.63 - -1.72 -0.11
Smo122114 (PACid_15418159)
- - - - - - - - - - - 2.5 - - - 1.26 0.96 - 0.97 - - - - 0.89 - - 3.8 - 1.16 - - 1.02
Smo123281 (PACid_15421923)
-0.98 1.56 0.41 -0.51 -0.43 -0.7 -0.46 -0.96 -1.3 -0.72 -0.65 -1.18 -0.64 -0.3 -0.54 0.87 -0.05 0.54 0.52 0.32 0.93 -0.19 0.02 -0.35 -0.21 -0.84 1.64 -0.3 0.19 0.16 -1.55 -2.15
Smo12509 (PACid_15406105)
-3.56 -3.9 -3.1 -4.37 -4.44 -2.74 -4.19 -6.02 -3.11 -5.16 -3.69 -4.26 -4.23 0.4 -4.72 1.46 -3.76 1.54 2.44 -7.17 1.68 - -4.14 -2.32 -2.33 -1.31 2.75 -0.15 0.79 -0.26 0.49 1.55
Smo126179 (PACid_15407556)
-2.36 -0.1 2.02 1.55 -2.24 0.94 -0.48 -1.41 - 1.33 2.54 0.86 - - - - 1.4 -1.59 -2.24 - -7.28 - -0.57 - - - 2.44 -9.97 -0.28 - - -1.33
Smo143126 (PACid_15413248)
-3.28 - - -3.35 - - - -4.14 - -3.55 - - 3.12 -3.54 - - 0.62 1.02 2.28 - 1.15 - 1.23 -2.01 - -0.22 1.58 - -0.06 1.35 0.48 -0.21
Smo161459 (PACid_15401738)
-0.68 1.24 0.47 -0.06 -0.32 -0.51 -0.08 -0.39 -0.06 -0.22 -0.01 -0.44 -0.14 -1.6 -1.01 0.89 0.32 0.76 -0.01 -5.34 -1.31 -2.04 0.5 0.45 -1.32 0.47 0.76 0.11 0.78 0.76 -0.98 -1.14
Smo174773 (PACid_15420088)
0.67 -0.29 -0.71 -1.13 -0.59 -0.36 -0.85 -0.58 -1.07 -0.59 -0.82 -0.81 - - - -4.09 0.46 -1.99 -1.09 - - - 2.6 1.91 -1.91 -0.71 -2.89 -2.51 2.08 1.68 1.33 -1.16
Smo20538 (PACid_15407446)
-1.0 - -6.24 0.06 -1.86 -1.09 -0.26 -0.11 -0.13 0.32 - -1.9 - - - -2.39 -2.13 -0.71 0.95 - 1.1 -1.23 2.32 2.33 -0.21 -0.07 1.76 - 0.27 -0.33 0.98 -0.35
Smo227784 (PACid_15407062)
-3.85 -3.7 -2.46 -3.77 -2.92 -2.93 -3.48 -4.26 -4.06 -3.59 -3.76 -4.49 -6.35 -1.33 -1.66 -0.38 -1.21 2.61 2.59 -0.03 -0.19 -1.33 -3.61 -1.27 -2.98 -4.23 2.03 -0.6 1.89 -0.32 -1.04 2.06
Smo227788 (PACid_15407066)
-4.83 -4.27 -3.31 -4.2 -3.52 -4.02 -3.88 -5.0 -3.87 -4.59 -5.05 -5.3 -5.62 -3.17 -3.83 -0.8 -0.19 1.54 2.89 -5.89 -3.91 -4.36 -4.08 -1.11 -1.65 -4.04 2.16 -0.59 2.13 0.1 -0.93 2.86
Smo230649 (PACid_15415454)
-0.62 1.48 1.29 -0.27 0.8 0.56 -2.07 -0.26 -2.8 -0.29 -1.29 -1.41 0.32 1.18 -1.0 1.32 -1.18 -0.61 0.08 - - -2.48 -1.09 -0.86 0.91 -1.36 1.89 1.03 -1.24 -0.79 -1.9 -3.29
Smo25885 (PACid_15402264)
-1.84 -2.85 -2.15 -3.17 -0.79 -1.65 -1.48 -1.97 -1.52 -2.66 -1.88 -2.47 -5.06 -1.77 -1.09 -0.63 -2.08 0.29 2.75 1.85 -1.98 -1.42 -3.31 -0.41 -2.7 -2.5 2.05 0.08 1.39 -0.05 0.3 1.89
Smo268054 (PACid_15411206)
-2.5 - - -2.57 - - - -3.36 - -2.77 - - 0.79 -2.76 - - - 1.8 3.07 - 1.93 - 0.6 -1.23 - 0.56 2.36 - 0.72 -0.38 -0.38 1.09
Smo403760 (PACid_15409594)
- - - - - - - - - - - - - - - - - 4.28 - - - - - - - - 3.64 - - - - -
Smo404489 (PACid_15410327)
-2.14 - - -2.49 -1.92 -2.24 -4.24 -1.4 - - - -3.55 - - -4.83 - 1.33 0.65 1.33 - - - 2.79 -0.38 2.18 1.55 1.57 -1.9 0.36 1.1 0.75 -1.01
Smo404936 (PACid_15414099)
- - - - - 0.38 - - - - - - - - - 0.67 - 2.02 1.94 - - - 1.96 0.44 - 1.33 2.54 - 0.37 1.37 1.91 -
Smo405662 (PACid_15414776)
0.78 -1.38 -0.56 -1.22 -0.11 -1.09 0.71 - 1.08 -0.56 -0.08 1.47 -0.99 -1.38 -0.28 -0.96 0.98 -0.46 - - - - 0.02 -1.04 - -0.05 2.06 2.07 -0.26 -1.12 0.43 -0.22
Smo405746 (PACid_15415486)
0.52 2.42 - - - 1.69 - - - - - - - - -11.37 - - - 3.06 - - - - - - - 3.07 - - - - 2.39
Smo407280 (PACid_15417529)
-0.97 -0.22 -2.48 -2.61 -0.58 -1.62 -3.06 -1.7 -2.37 - -2.48 -0.91 -5.59 -1.15 -4.52 - 0.74 -0.83 1.69 - - - 2.07 0.75 1.79 2.31 -0.65 -2.85 1.57 1.14 0.48 -1.45
Smo408476 (PACid_15421853)
-1.04 - - - - 2.97 - - - - -0.07 - - - - - 0.24 0.78 1.7 - - - - - - 2.73 3.32 - - - - -
Smo4119 (PACid_15413516)
-1.69 -0.48 -2.42 -1.76 - -0.26 0.33 1.23 1.32 0.22 1.16 -0.31 - - - - 0.0 -0.95 -2.05 - - - -2.03 -2.02 2.2 1.13 0.92 0.63 1.85 1.56 -2.05 -3.71
Smo412483 (PACid_15411660)
- - - 0.64 - - - - - - - - - - - - 1.2 - 3.2 - - - 1.14 2.28 - - 2.38 - 1.2 - 1.16 1.11
Smo413024 (PACid_15411394)
-2.64 -1.17 - -2.22 -0.0 0.65 1.07 1.01 -0.34 -0.03 0.25 -0.02 -2.93 -2.41 -0.03 -1.41 -2.17 0.26 -0.5 - - - -0.46 -0.14 -1.2 0.41 1.56 2.68 -0.15 0.04 0.28 -0.2
Smo413139 (PACid_15412159)
- - - - - - - - - - - - 3.65 - - 2.68 - - - - - - - - - - 3.71 - - - - -
Smo413187 (PACid_15412277)
- - - - - - - - -0.13 - - 0.14 - 1.62 -0.45 0.55 0.25 0.92 0.24 - - - 0.2 0.18 - 1.27 3.13 - 0.27 0.26 1.23 1.16
Smo415922 (PACid_15401721)
-0.52 -0.44 -4.14 -1.04 -2.95 -0.74 -2.03 -0.79 -2.21 -0.6 -1.4 -1.15 - -0.02 -5.43 - 0.25 -0.37 0.89 - - - 1.53 -0.14 1.16 0.84 2.52 - 0.77 0.39 1.99 0.48
Smo416943 (PACid_15404625)
- - - - - - - - - - - - - 0.33 3.21 - - - - - - - - - - -0.14 4.36 - - - - -
Smo417054 (PACid_15422984)
-0.72 - - - - -0.73 -1.73 - - - 0.04 -1.71 - -1.44 - -1.47 -1.25 0.04 3.47 - - - 1.29 0.72 - - 3.06 - 0.02 -1.44 -1.64 0.81
Smo417734 (PACid_15406043)
-2.32 -15.19 - - - -27.93 1.65 -0.45 -0.52 0.82 - -2.73 - 0.22 1.73 - - -2.06 -23.83 - - - - - 0.28 -8.44 3.44 3.07 - - -2.8 -
Smo417948 (PACid_15407536)
-0.44 - - -2.5 - 0.07 -0.14 -0.0 -0.29 -0.7 0.35 -1.08 - - - -2.09 1.05 1.87 1.45 - - - 2.44 1.3 1.07 - -0.77 - 0.82 0.39 1.27 -2.25
Smo417965 (PACid_15407584)
0.72 0.19 -0.07 0.19 -0.01 1.71 1.37 -2.63 -0.9 -2.63 0.32 -0.72 - -17.05 0.26 -0.25 -1.23 0.35 1.24 - -1.31 - -2.5 -1.07 - 1.11 2.35 1.03 -0.76 - -1.66 -2.28
Smo419407 (PACid_15409585)
1.69 0.83 2.68 - - - - - - 0.67 2.62 0.85 - - 0.35 - - - - - - - - - - - 3.29 - - - - -
Smo419452 (PACid_15409678)
2.66 - - 1.86 - - - - - - - 2.15 - - - - 2.51 - - - - - - - - - 3.58 - - - - -
Smo420196 (PACid_15410755)
1.02 - 2.14 - - - - - - - - - 2.69 - - - - - 2.53 - - - - - - - 3.74 - - - - -
Smo420255 (PACid_15411425)
- -0.16 1.19 - - - 0.85 -0.3 - 0.74 -0.17 - 0.02 1.59 -0.73 2.07 0.01 - - - - - 0.02 2.18 - - 2.21 - -0.15 - 0.89 -0.16
Smo422444 (PACid_15418755)
- 1.19 - -0.22 - - - 1.03 1.76 - - -0.27 - -0.38 -0.85 1.65 - 0.12 0.74 - - - - -0.2 - - 3.68 - - - 0.75 -
Smo422499 (PACid_15418879)
- - - - - - - - - - - - - - - - -0.09 3.84 - - - - - - - - 3.62 - 1.3 - - 0.95
Smo423067 (PACid_15418664)
-0.44 -0.73 -0.36 -0.9 -0.42 0.01 -0.05 -0.22 0.53 -0.65 0.09 -0.63 -5.82 -2.67 -4.42 -4.47 0.69 0.06 0.98 -3.12 0.12 -2.58 1.08 -0.31 1.97 0.27 0.0 -0.72 1.24 0.7 0.07 0.01
Smo423537 (PACid_15422302)
-0.36 -2.2 -3.39 -1.78 -3.33 1.1 0.94 0.21 -1.17 1.11 -3.18 0.42 - -1.11 -1.38 -0.83 -0.6 -0.92 -0.02 - - - -0.16 0.01 2.06 1.39 1.85 0.8 0.6 0.45 -1.45 -1.52
Smo423903 (PACid_15402973)
-1.49 -0.19 -2.13 -0.17 -0.79 -0.69 -1.9 -0.73 -1.84 -0.5 -2.92 -0.57 - - -0.88 -2.57 1.21 - 2.23 - - - -0.13 -0.76 -0.7 0.28 1.94 2.94 -0.43 0.28 -0.76 -0.5
Smo423987 (PACid_15403155)
- 1.12 - - - 1.27 - 1.19 - - 1.71 0.85 - - 0.28 - 1.15 - 2.68 - - - - - - 1.54 2.64 - - - 0.11 -
Smo424165 (PACid_15422217)
-1.24 -1.69 -1.66 -1.61 -2.82 -1.65 -1.61 -2.93 -1.47 -2.23 -2.06 -2.2 -2.87 0.76 0.13 1.14 -1.25 1.03 2.55 1.49 - -1.98 -4.25 -3.02 -0.91 -1.02 1.43 -1.35 0.89 1.54 0.06 1.04
Smo425123 (PACid_15402756)
-1.86 -1.88 -0.92 -2.2 -2.02 -1.48 -0.54 -0.84 -0.4 -0.76 -0.73 -1.62 -0.68 0.99 -0.38 1.09 -1.29 1.78 0.07 -0.09 -0.86 -0.7 -0.0 1.03 -0.91 -0.67 1.52 0.61 0.07 0.09 0.41 1.03
Smo425639 (PACid_15406639)
0.93 - - 0.27 - - - 1.91 -0.09 - 1.07 -0.08 - - -0.72 - 0.16 - 0.05 - - - 0.18 - - - 3.27 2.23 - - 0.01 0.95
Smo426440 (PACid_15407986)
-0.16 -0.77 - 0.61 - -1.63 -0.09 1.05 -0.53 1.76 0.88 0.85 -2.65 -0.87 -3.29 -1.65 0.46 0.85 0.39 - - - -1.76 0.24 2.11 0.0 -0.43 0.5 -2.77 -0.46 -0.22 0.71
Smo428372 (PACid_15413318)
- - - - - - - - - - - - 3.56 - - - - - - - - - - 3.34 - - - - - - - 3.33
Smo431562 (PACid_15401463)
- - - - - - - - - - - 1.98 - - - - 2.14 - - - - - 2.09 - - - 3.42 - 2.08 2.17 - -
Smo431932 (PACid_15404378)
- - - - - - - - - - - - - 1.49 1.58 - 0.53 - 2.87 - 2.9 - - - - 1.83 2.33 - 0.47 - - -
Smo437420 (PACid_15418173)
-4.97 -4.47 -3.98 -3.75 -2.68 -3.08 -2.77 -3.4 -3.65 -4.52 -6.27 -4.54 - -1.97 -6.23 -0.0 -0.45 2.85 2.7 - -1.64 - -1.68 -0.51 -4.46 0.35 1.95 0.15 1.13 1.19 0.59 0.8
Smo438249 (PACid_15419624)
-1.09 -0.99 -1.18 -1.56 -1.55 -1.24 -1.52 -0.65 -1.07 -1.42 -0.67 -0.65 -9.4 - -12.06 -6.39 0.89 1.99 0.82 - -8.06 - 2.76 0.77 -0.91 -4.64 -2.77 -3.06 1.36 1.22 0.65 1.57
Smo439448 (PACid_15401711)
-2.69 -2.09 - -4.08 - -3.92 - -3.37 -2.29 -3.53 -3.75 -2.32 - - - -2.41 1.43 1.54 1.34 - - - 2.9 1.04 0.48 0.42 - - 1.96 1.75 1.32 -1.08
Smo444423 (PACid_15416562)
0.38 -0.22 -0.49 -0.84 -0.57 -0.84 -0.92 -1.0 -0.92 -0.52 -0.52 -0.59 -3.7 -4.16 -0.9 -3.21 0.53 0.9 0.64 -0.11 -1.9 -1.05 1.83 1.47 1.06 -2.97 -2.45 -2.41 1.57 1.45 -0.19 -0.15
Smo445660 (PACid_15421072)
-5.03 -5.65 -3.44 -4.46 - -3.36 -1.69 -2.96 -3.74 -4.09 -4.9 -4.75 -2.41 0.25 -3.51 1.3 -3.34 0.31 2.14 - -0.58 - -4.25 -1.45 -2.18 1.58 1.91 -0.5 1.28 1.43 2.12 1.65
Smo59760 (PACid_15412470)
- - - - - - - - - - - - - - - 2.98 - 3.85 1.68 - - - - 1.59 - - - - - - - 1.8
Smo71180 (PACid_15421130)
-0.62 -0.82 -0.28 -0.31 -0.65 -0.56 0.11 0.28 0.06 -0.14 -0.38 -0.49 -0.1 0.58 -0.42 0.3 0.34 0.01 -0.05 -0.69 -0.19 -2.61 0.39 0.21 0.67 0.95 -0.14 0.06 0.63 0.6 -0.27 -0.02
Smo71305 (PACid_15422488)
-0.64 -0.22 0.46 -1.86 -1.87 -1.2 -0.82 -1.78 -4.33 -3.01 -0.89 -1.07 - -2.73 -4.94 -0.57 0.56 1.31 2.0 - - - 1.23 -0.11 -2.19 0.0 1.32 0.99 2.06 0.82 0.95 -1.22
Smo73023 (PACid_15403736)
-0.04 - -4.07 -1.32 - -2.73 -4.81 -1.08 -0.52 -3.48 -1.3 -2.19 -1.13 - -4.97 -0.25 -1.47 1.59 2.19 - - - -0.16 -0.48 - 2.01 1.97 0.25 1.73 0.7 1.06 0.55
Smo74001 (PACid_15406659)
-0.29 -0.75 -0.42 -0.27 -0.67 0.1 -0.13 -0.22 0.31 -0.08 -0.27 0.03 -4.53 -2.3 - -4.65 0.97 0.96 1.17 - -2.25 - 1.3 0.02 0.77 0.22 0.03 -0.8 1.38 0.85 0.48 0.15
Smo77688 (PACid_15420264)
-1.43 -0.62 -4.66 -4.24 -0.55 -2.26 - -3.35 - -2.71 -6.54 -2.18 -1.37 -4.19 -6.4 0.26 -2.45 -2.85 -0.37 - 1.16 - 0.1 2.16 1.33 1.11 2.92 -0.04 0.04 0.15 1.36 0.12
Smo77831 (PACid_15421552)
-0.55 -2.9 -2.79 - - -4.41 -3.32 -3.09 -4.14 -3.09 -1.97 -1.46 0.12 - - 2.03 1.44 1.92 0.41 - - - 1.14 -0.36 2.04 0.41 1.34 -2.25 1.09 0.92 0.36 -0.95
Smo78063 (PACid_15418541)
-2.07 -1.56 -0.79 -1.83 -2.41 -1.55 -1.72 -1.79 -1.94 -1.94 -2.88 -2.2 -1.67 0.16 -0.64 0.2 -1.29 2.51 1.94 0.92 0.22 0.93 -1.4 0.06 -0.25 -1.18 1.25 -0.83 -0.03 -0.31 -0.38 1.17
Smo82124 (PACid_15408823)
-1.5 1.52 0.91 -0.3 -0.77 -1.12 -0.47 -0.77 -0.86 -0.56 -0.55 -0.42 -0.39 -0.17 0.26 0.8 0.69 0.28 -0.37 - -3.59 - 0.75 -0.66 0.65 -0.16 2.19 -0.19 0.14 0.01 -1.51 -2.89
Smo83176 (PACid_15411935)
-2.45 - - -3.35 - - - -4.14 - -3.56 - -3.86 - - - - 0.2 1.69 2.12 - 1.14 - 2.27 0.59 -0.25 -1.3 2.73 -1.51 0.82 0.7 0.22 0.54
Smo8334 (PACid_15404286)
1.07 - 2.15 - - - - - - - - - -0.68 - 0.85 - - - 1.14 - - - - - - - 2.79 3.8 - - - -
Smo83554 (PACid_15414984)
-2.45 - - -3.35 - - - -4.14 - -3.56 - -3.86 - - - - 0.2 1.69 2.12 - 1.14 - 2.27 0.59 -0.25 -1.3 2.73 -1.51 0.82 0.7 0.22 0.54
Smo85468 (PACid_15420034)
-0.28 -0.6 0.33 0.1 0.58 0.3 0.35 0.25 0.34 0.13 0.37 -0.23 0.09 -1.43 -2.3 -0.02 0.23 -0.77 0.8 -6.11 -0.54 - 0.72 -0.26 0.25 -0.13 0.3 0.45 0.73 0.32 -0.41 -0.27
Smo87207 (PACid_15401893)
-1.41 - -0.22 0.46 - -2.35 - -0.77 -1.65 -0.82 -0.76 -1.52 0.52 0.81 -1.26 1.1 -0.76 1.36 1.57 - - - 0.78 0.18 - 0.93 1.63 - 0.35 -0.09 1.55 0.94
Smo89701 (PACid_15411598)
-1.49 -0.93 0.49 -1.58 -1.88 -0.2 -0.87 -0.15 0.13 -1.07 0.54 -0.67 -2.91 -2.78 -5.69 -1.51 1.44 0.88 0.87 - -3.64 - 1.94 1.34 -1.49 -2.34 -1.39 -1.74 1.67 1.4 0.58 0.18
Smo93238 (PACid_15419785)
0.22 - - - - - - -0.23 -1.81 - - 0.5 - - - -1.25 0.31 - - - -0.08 - 2.18 0.63 2.53 1.28 2.83 0.82 0.85 - -0.43 -
Smo98895 (PACid_15416818)
- - - - - - - - - - - - - 3.18 3.18 - - - - - - - - - - - 3.8 - - - - -
Smo99342 (PACid_15415830)
- - - - - - - - - - - - - - 2.34 - 2.35 - - - - - - - - 3.34 3.55 - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.