Heatmap: Cluster_240 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo56118 (PACid_15421184)
-0.44 -0.61 -0.11 0.01 -0.0 0.41 0.5 0.56 0.61 0.67 0.43 0.21 -0.3 -0.49 0.09 -0.08 -0.6 -0.97 0.38 -3.19 - -4.51 0.23 0.7 -0.98 1.02 0.82 0.75 -0.23 -0.14 -0.87 -0.72
Smo56649 (PACid_15402774)
-0.2 -0.08 0.28 0.17 0.49 0.57 0.5 0.38 0.65 0.46 0.1 -0.07 -0.18 -0.78 -0.31 -0.09 -0.3 -0.67 -0.05 - -5.64 -4.68 0.14 0.4 -0.05 0.35 0.93 0.95 0.05 0.04 -0.92 -0.97

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.