Heatmap: Cluster_188 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101359 (PACid_15402414)
-2.1 -2.1 -2.51 -2.12 -2.94 -2.44 -2.38 -3.05 -2.29 -2.19 -2.91 -1.86 -5.21 -4.78 -8.07 -3.78 -0.07 0.36 -1.42 2.21 3.35 -1.12 -1.04 -1.47 2.83 -4.13 -3.59 -3.64 0.02 -0.29 -0.29 -0.27
Smo102690 (PACid_15407656)
-0.38 -0.46 -0.74 -0.46 -0.7 -0.21 -0.23 -0.39 0.05 0.03 -0.19 -0.18 0.0 -0.49 -0.35 0.51 -0.34 0.08 -0.12 0.97 0.31 0.94 0.19 0.03 1.69 -0.6 -0.91 -0.38 0.01 0.01 -0.89 -0.81
Smo102863 (PACid_15409242)
-0.47 -0.27 -0.33 -0.08 -0.12 0.07 -0.19 -0.56 -0.36 -0.48 -0.61 -0.46 -0.82 -0.2 -0.98 -0.57 -0.09 0.38 -0.26 0.96 1.71 0.65 -0.31 -0.42 0.95 -0.37 -0.08 0.23 -0.17 -0.17 -0.22 -0.26
Smo107673 (PACid_15422240)
-1.29 -1.3 -1.26 -1.16 -0.74 -0.69 -0.76 -0.56 -0.68 -0.87 -0.93 -1.28 -1.12 -1.54 0.3 -0.97 0.17 -0.05 -0.37 1.28 2.01 1.34 -0.25 -0.38 2.13 -1.04 -0.44 -0.47 -0.09 -0.01 -0.34 -0.57
Smo114753 (PACid_15421377)
-0.08 -0.05 -0.1 -0.07 -0.12 -0.19 -0.28 -0.66 -0.42 -0.46 -0.39 -0.39 -0.03 0.78 -0.36 0.51 -0.04 -0.18 -0.21 1.28 0.75 0.93 -0.28 -0.29 0.63 -0.3 -0.29 -0.27 -0.43 -0.24 -0.88 -0.88
Smo115729 (PACid_15402019)
-0.79 -0.88 -0.34 -0.81 -1.15 0.03 -1.11 -1.12 -1.04 -1.16 -0.96 -1.21 -0.04 -0.54 -0.57 -0.04 -0.08 0.66 -0.05 1.53 -0.52 1.05 -0.14 -0.1 1.85 -0.02 0.52 0.37 -0.11 -0.31 -0.02 -0.14
Smo118663 (PACid_15410159)
- - - - - - - - - - - - -1.32 - - 0.17 0.94 1.08 0.47 2.48 2.07 - 0.13 0.52 2.97 - - - 0.63 0.78 -0.23 -0.3
Smo132827 (PACid_15408343)
-0.76 -0.86 -0.66 -0.73 -0.58 -0.51 -0.03 -0.66 -0.4 -0.59 -0.69 -1.01 -0.57 -0.12 0.55 -0.66 0.27 0.81 -0.46 1.36 0.99 0.83 -0.28 -0.25 1.02 -1.22 0.16 -0.21 -0.05 -0.16 0.12 0.44
Smo138341 (PACid_15422044)
-3.48 - -2.87 - -1.86 0.05 -3.44 -0.69 -0.96 -1.59 0.58 - -2.33 - -2.62 -0.93 - -1.03 0.09 3.53 2.51 1.63 - - 1.5 -0.44 -1.19 - -1.62 - - -1.72
Smo18420 (PACid_15422857)
-0.98 -0.78 -0.84 -0.63 -0.11 0.06 0.02 -0.17 -0.42 -0.72 -1.04 -1.15 -0.21 -1.53 1.23 -0.01 -0.4 -0.23 0.49 1.13 0.52 1.69 -0.23 0.01 1.38 -2.03 -0.91 -1.11 -0.29 -0.24 -0.44 0.0
Smo229902 (PACid_15414439)
-0.01 -0.13 -0.75 -1.1 -1.54 -1.42 -1.69 -1.66 -1.37 -1.3 -1.21 -0.51 -0.1 0.85 -0.72 0.75 0.09 1.17 0.42 1.28 1.86 1.05 -0.57 -0.54 0.84 -0.55 -1.39 -2.02 -0.03 -0.07 -0.45 -0.2
Smo28116 (PACid_15405470)
-1.56 -2.31 -2.54 -2.69 -2.58 -2.29 -2.52 -2.48 -2.36 -1.61 -2.07 -2.03 -3.18 -4.01 -4.22 -2.39 -0.43 -0.37 -0.85 2.43 1.93 1.92 -1.09 -1.01 3.25 -2.03 -1.8 -1.53 -0.58 -0.6 -0.69 -0.65
Smo33940 (PACid_15404195)
-2.36 -2.07 -2.26 -1.61 -1.38 -1.24 -1.2 -1.32 -2.14 -1.63 -2.17 -2.27 0.4 -3.87 -2.03 0.02 -0.25 0.34 -0.12 2.28 1.44 1.14 -0.24 -0.07 2.41 -0.18 -0.29 -0.33 -0.81 -0.68 0.03 0.2
Smo39366 (PACid_15417291)
-0.11 -0.32 -0.2 -0.63 -0.66 -0.45 -0.16 -0.24 -0.33 -0.15 -0.22 -0.09 -2.46 -3.13 -3.76 -2.4 -0.22 0.13 -1.03 0.63 2.62 -0.53 -1.19 -1.65 2.66 -1.24 -1.01 -0.99 -0.54 -0.84 -1.13 -0.85
Smo403044 (PACid_15404095)
-0.62 -0.59 0.37 0.24 -0.39 0.24 -0.05 0.5 0.57 0.43 0.46 -0.17 -2.57 -5.15 -2.83 -2.73 -0.66 1.93 1.06 2.45 -0.79 -3.79 -1.51 -1.2 0.27 -0.1 -0.18 -1.52 -0.63 -1.97 -1.75 -1.7
Smo403524 (PACid_15407874)
- - - - - - -2.99 - - -1.9 - - 0.54 -0.94 1.11 0.39 1.43 1.28 0.67 2.9 - - 0.58 -0.24 -1.75 -0.69 -1.0 0.75 0.6 0.93 0.54 0.78
Smo403910 (PACid_15411092)
-1.15 -0.72 -1.6 -1.02 -1.28 -0.82 -0.99 -1.03 -0.57 -0.43 -1.36 -0.79 -0.88 -0.4 -0.54 -1.2 -2.04 -0.37 -1.05 1.9 2.56 1.39 -2.01 -1.46 2.92 -2.0 -3.08 -2.41 -2.0 -1.92 -2.46 -2.61
Smo404086 (PACid_15407110)
-0.97 -1.04 -1.0 -0.88 -1.5 -0.5 -0.83 -0.44 -0.39 -0.61 -0.58 -0.61 -0.01 -1.93 -1.72 -0.12 -0.66 -0.45 0.76 2.14 0.34 1.88 -0.44 -0.56 1.91 -0.09 -0.38 -0.34 -0.57 -0.64 -0.92 -1.23
Smo404427 (PACid_15410180)
-0.72 0.16 -1.26 -1.49 -2.32 -0.97 -1.63 -0.04 -0.51 -2.0 -0.45 -0.41 0.47 -2.04 -2.21 -0.61 -1.22 -0.81 -0.54 2.89 1.68 -0.1 -1.05 -1.38 1.98 -2.61 -0.76 -0.44 -0.32 0.01 -0.72 -0.78
Smo404843 (PACid_15413308)
-1.63 -1.55 -1.84 -1.86 -1.76 -2.13 -1.94 -2.59 -2.05 -1.61 -2.01 -1.27 -0.73 -1.58 -1.39 -0.4 -0.55 0.62 -0.41 1.89 1.86 1.13 -0.4 -0.38 2.92 -0.75 -0.44 -0.8 -0.66 -0.76 -0.21 -0.11
Smo405066 (PACid_15410116)
-0.24 0.02 0.19 -0.06 0.2 0.14 0.05 -0.15 -0.12 -0.41 -0.36 -0.31 -0.94 -0.41 -0.33 -0.58 -0.2 -0.58 -0.38 1.6 0.7 0.67 -0.5 -0.51 0.92 -0.03 0.37 0.21 -0.67 -0.65 -0.77 -0.48
Smo408741 (PACid_15401845)
-2.04 -1.14 -0.42 -0.19 -0.29 -0.16 0.48 -0.59 -0.48 -0.7 -0.86 -1.05 -1.53 -2.29 -1.38 -1.28 0.6 -0.58 -0.48 2.09 1.17 1.13 -0.79 -0.5 1.61 0.58 -0.83 -0.75 -0.31 0.16 -0.05 -0.54
Smo410891 (PACid_15408800)
-4.6 -4.04 -5.0 -5.08 -4.61 -4.8 -6.32 -3.77 -3.66 -2.32 -4.39 -3.49 1.54 -1.87 -3.67 0.18 -0.6 -2.35 -0.28 2.19 1.83 1.93 0.06 0.39 2.08 0.68 -0.16 -0.69 -0.48 -0.22 0.11 -0.17
Smo411531 (PACid_15409360)
-6.55 - -3.64 - - -2.83 -2.63 -2.37 -3.63 -2.84 -2.89 -2.89 -0.15 -5.14 -2.75 -0.18 -0.19 -0.48 0.62 2.39 1.43 1.84 0.05 0.15 2.96 -1.99 -1.73 -2.82 0.1 -0.29 -0.23 -0.06
Smo414281 (PACid_15415994)
-0.71 -0.78 -0.8 -1.32 -0.81 -0.75 -0.74 -0.84 -0.18 -0.46 -0.61 -0.37 -2.05 -1.27 -0.38 -1.28 -0.1 0.02 0.35 1.56 1.08 0.97 -1.1 -0.96 2.48 -1.49 -1.58 -1.98 -0.25 -0.0 0.56 0.63
Smo416326 (PACid_15422333)
-1.22 -3.64 -3.48 -2.59 -0.95 -0.63 -1.32 -0.52 -0.73 -0.07 -0.86 -1.33 -2.16 -1.54 -1.3 -1.43 -0.44 -0.54 0.28 1.6 0.74 1.71 -1.61 -1.25 2.39 0.58 0.56 0.97 0.03 0.31 -0.39 -0.77
Smo420524 (PACid_15413666)
- - - - -3.83 - - - - - - - -0.59 - -4.05 -1.11 -1.33 0.19 -0.09 2.78 2.81 0.43 -0.16 0.75 0.31 -0.06 -0.29 -0.12 0.43 0.32 0.92 1.02
Smo422538 (PACid_15419465)
-1.89 -1.75 -1.77 -1.22 -0.78 -0.75 -0.93 -1.0 -1.13 -1.34 -1.75 -1.53 -0.85 -2.25 -1.83 -0.52 0.01 -0.13 -0.27 2.02 1.93 1.56 -0.29 -0.33 2.42 -0.37 -0.66 -0.68 -0.25 -0.15 -0.96 -1.08
Smo426590 (PACid_15408930)
-5.5 - -5.72 -5.81 - -2.82 -2.63 -5.59 -3.89 -4.06 -4.22 -2.63 -1.55 -2.58 0.15 -2.0 -0.88 0.52 0.26 2.32 1.62 2.29 -0.92 -0.36 2.82 -1.63 -0.04 -3.06 0.28 0.13 -1.01 -0.57
Smo427627 (PACid_15412559)
- -2.31 - - - - - - - - - - -0.56 -0.06 0.38 -0.29 -1.23 -0.19 -0.04 2.9 2.21 1.32 -1.03 -1.1 2.89 -1.81 -1.03 -0.58 -1.45 -0.99 -2.37 -1.69
Smo430201 (PACid_15418448)
-1.94 -2.04 -1.45 -2.25 -2.39 -1.8 -2.3 -2.67 -2.18 -3.19 -3.34 -2.17 -1.19 -0.93 -0.98 -0.45 -0.73 -1.0 0.03 3.01 2.36 1.24 -0.68 -0.78 2.13 -0.86 -0.71 -0.59 -1.05 -0.46 -1.09 -1.02
Smo431583 (PACid_15401512)
-0.82 -0.87 -1.06 -1.21 -0.69 -0.46 -0.56 -0.95 -0.95 -1.13 -0.71 -1.12 -2.22 -1.92 0.04 -1.3 -0.56 -0.85 -0.31 2.21 1.16 1.43 -1.16 -0.95 2.65 -0.43 -0.14 0.05 -0.98 -0.76 -1.18 -1.37
Smo431926 (PACid_15404352)
-0.85 -0.79 -0.91 0.33 -0.6 -0.41 -0.08 -0.27 0.72 -0.33 -1.06 -0.74 -1.47 -1.79 -1.74 -0.97 -0.83 -2.11 -0.58 2.07 1.19 2.0 -1.83 -1.4 2.36 -1.63 -1.18 -0.41 -2.01 -1.31 -0.87 -1.16
Smo437580 (PACid_15419129)
-1.3 -1.84 -2.28 -1.81 -1.0 -1.3 -0.4 -0.3 -0.2 -0.57 -1.15 -1.25 -1.15 -1.5 -1.35 -0.63 0.13 0.65 0.15 1.48 1.18 -0.63 0.09 -0.05 2.33 -0.87 -0.51 -0.45 0.72 0.76 0.34 -0.05
Smo441883 (PACid_15411114)
- - - - - - - -2.21 -4.76 -3.93 - -3.25 -1.32 -4.9 -3.8 -1.59 -0.77 -1.98 0.32 2.54 2.58 1.48 -0.76 -1.43 3.29 -0.04 -1.36 -2.45 -0.9 -1.82 -1.21 -0.93
Smo442157 (PACid_15408464)
-2.77 -2.15 -1.78 -1.67 -1.06 -1.28 -1.75 -1.92 -2.49 -1.77 -3.47 -3.03 -0.19 -1.26 -0.26 -0.22 -1.02 0.09 0.39 2.7 2.44 0.86 -0.2 0.12 1.96 -0.52 -0.92 -0.78 -1.28 -1.01 -1.66 -1.16
Smo444588 (PACid_15417522)
-0.67 -0.37 0.05 -0.24 -0.65 0.15 -0.07 -0.61 -0.97 -0.08 -0.95 -0.88 0.13 -1.0 0.53 0.0 0.12 0.41 0.41 1.38 1.34 -0.28 -0.12 -0.38 1.39 -0.98 -0.29 -0.24 -0.34 -0.06 -1.27 -1.19
Smo446149 (PACid_15420198)
-1.17 -1.26 -1.24 -0.93 -0.74 -0.65 -0.95 -0.47 -0.91 -1.08 -0.9 -1.26 -0.15 -1.12 -0.15 0.18 -0.39 -1.46 -0.02 2.11 1.01 1.85 -0.25 -0.21 1.8 -0.44 -0.47 -0.46 -0.35 -0.22 -0.66 -0.57
Smo59179 (PACid_15407760)
-1.19 -1.19 -1.8 -1.67 -1.72 -1.23 -1.71 -1.84 -1.73 -1.73 -1.4 -1.75 1.17 -0.79 0.03 1.07 -0.29 0.15 0.05 2.09 1.2 1.67 -0.24 -0.15 1.06 -0.85 -0.71 -0.72 -0.45 -0.57 0.02 0.32
Smo69582 (PACid_15418135)
-0.95 -1.21 -1.06 -1.48 -0.77 -0.32 -1.0 -0.77 -1.14 -1.6 -1.72 -1.71 0.22 -1.3 0.84 0.32 0.25 0.96 0.3 1.32 1.85 1.35 -0.64 -0.89 1.45 -1.43 -0.25 -1.82 0.17 0.03 -1.16 -0.47
Smo69660 (PACid_15418891)
-0.82 -1.12 -0.92 -0.75 -0.45 -0.65 -0.63 -0.82 -0.49 -0.88 -0.42 -0.59 -2.89 -3.85 -3.36 -2.47 0.16 0.45 -1.19 1.96 2.26 0.95 -0.74 -1.1 1.86 -0.62 -0.77 -0.33 0.51 0.21 -0.27 -1.1
Smo76204 (PACid_15414188)
-1.14 -0.79 -1.1 -0.78 -0.62 -1.25 -1.16 -0.91 -1.24 -1.92 -1.23 -1.02 0.03 -0.66 -0.65 0.11 -0.42 0.61 0.95 2.28 -1.31 1.43 -0.57 -0.01 2.18 -1.08 0.13 -0.4 -0.65 -0.58 -1.32 -1.07
Smo76417 (PACid_15415693)
-0.72 -1.39 -0.64 -1.85 -0.45 -0.68 -1.22 -1.02 -2.16 -1.16 -2.42 -1.25 -1.61 -3.2 -0.96 -0.7 -1.31 -0.49 0.67 3.06 1.97 2.08 -2.13 -3.18 0.9 -1.48 -1.68 -0.27 -0.03 -0.46 -2.57 -2.64
Smo76616 (PACid_15417171)
-3.92 -2.59 -2.08 -2.19 -3.94 -2.02 -4.1 -2.61 -0.99 -3.32 -3.16 -3.08 1.25 -0.33 0.17 0.43 1.14 1.91 0.32 2.21 2.01 1.18 -1.76 -1.88 1.18 - - - -0.69 0.02 -0.7 0.11
Smo78854 (PACid_15402293)
-0.46 -0.59 -0.42 -0.24 0.17 -0.04 -0.06 0.16 -0.07 -0.05 -0.15 -0.48 -0.24 -0.64 0.01 0.28 -0.37 -1.2 0.04 1.43 -0.06 1.14 -0.18 -0.23 1.17 0.12 -0.26 -0.77 -0.41 -0.37 -0.47 -0.41
Smo84137 (PACid_15414831)
-1.21 -1.2 -0.62 -0.95 -0.88 -0.7 -1.11 -0.98 -1.16 -1.25 -1.07 -1.24 0.12 0.52 0.37 -0.34 -0.25 1.0 -0.45 1.58 1.12 1.62 -0.18 -0.22 1.82 -1.74 -1.09 -1.57 -0.4 -0.6 -0.28 0.04
Smo84746 (PACid_15419350)
-2.35 -2.02 -1.7 -2.17 -3.57 -2.48 -1.63 -1.38 -2.92 -0.28 - -2.51 0.4 - -2.43 0.35 -0.57 1.06 -0.13 1.85 2.01 0.86 -0.99 -0.36 2.73 -1.41 -3.21 - 0.04 -0.05 0.32 0.48
Smo85412 (PACid_15419905)
-0.5 -0.57 -0.69 -0.63 -0.38 -0.45 -0.6 -0.5 -0.33 -0.48 -0.6 -0.42 -0.41 -0.11 -0.19 -0.16 -0.39 -0.11 0.34 1.62 0.88 0.52 0.03 0.26 1.91 -1.28 -1.1 -1.38 0.03 -0.02 -0.32 -0.37
Smo85502 (PACid_15420640)
-1.79 -2.11 -1.75 -2.03 -1.62 -1.74 -1.78 -1.31 -1.57 -1.04 -2.1 -1.37 -0.31 -0.62 -0.15 -0.04 -0.85 -2.67 0.44 1.47 2.35 2.17 -0.83 -0.65 2.57 -0.64 -1.85 -1.18 -1.12 -0.4 -1.34 -1.77
Smo90013 (PACid_15409434)
-0.69 -1.43 -1.12 -0.55 -0.7 -0.55 -0.49 -0.79 -0.28 -0.54 -0.31 -0.33 -0.11 -1.28 0.12 -0.15 -0.46 -0.17 0.0 2.04 1.15 1.02 -0.24 -0.16 1.52 -1.12 -0.55 -1.25 -0.45 -0.33 0.02 0.19
Smo90874 (PACid_15415735)
-0.65 -0.48 -0.61 -0.61 -0.69 -0.23 -0.37 -0.22 -0.37 -0.33 -0.3 -0.73 -0.33 0.16 0.65 -0.14 -0.72 -0.62 -0.58 1.9 1.95 -0.17 -0.37 -0.52 1.37 -0.35 -0.45 -0.94 -0.77 -0.63 -0.91 -0.82
Smo99856 (PACid_15419650)
-0.48 -0.37 -0.69 -0.4 -0.43 -0.39 -0.32 -0.23 0.09 -0.02 -0.19 -0.16 0.05 0.17 0.34 0.22 -0.49 -0.53 0.42 0.88 0.61 -0.79 0.16 0.3 1.37 -0.21 -1.13 -1.33 -0.08 -0.2 0.38 0.13
Smo99954 (PACid_15420412)
-1.5 -1.51 -1.17 -1.81 -1.32 -1.33 -1.04 -1.09 -1.39 -1.43 -1.54 -1.62 -2.8 -3.06 -2.51 -2.49 -0.37 0.23 -1.01 2.72 2.6 0.88 -1.08 -1.29 2.1 -0.84 -0.12 -0.31 -0.42 -0.61 -0.88 -1.16

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.