Heatmap: Cluster_181 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo110345 (PACid_15406675)
-0.15 -0.28 -0.21 -0.12 -0.09 -0.06 -0.14 0.38 0.47 0.56 0.63 0.52 -0.61 -0.27 -0.72 -0.61 -0.77 -1.14 -0.14 -0.78 -0.42 -2.15 -0.47 -0.27 0.62 1.41 0.66 0.49 -0.36 -0.36 -0.08 0.1
Smo111946 (PACid_15414308)
0.05 0.48 0.71 0.36 -0.24 -0.85 0.38 1.14 1.18 1.73 1.62 1.73 -2.47 -5.64 -6.61 -4.95 -1.88 -5.41 -2.93 -1.97 0.66 -5.18 -2.79 -3.54 0.46 1.67 -1.01 -1.56 -1.01 -1.41 -1.68 -1.19
Smo115574 (PACid_15422827)
-0.42 -0.29 0.02 0.2 0.19 -0.16 0.17 0.49 0.51 0.57 0.64 0.22 -0.65 -0.86 -0.76 -0.49 -0.77 -1.25 -0.78 -1.04 0.39 -1.46 -0.4 -0.52 0.76 1.52 0.62 0.56 -0.6 -0.72 -0.58 -0.2
Smo121052 (PACid_15414681)
-0.02 -0.28 -0.28 0.04 0.27 0.3 0.19 0.46 0.67 0.61 0.53 0.57 -0.57 -0.61 -0.13 -0.48 -0.5 -1.79 -0.4 -1.64 0.44 -1.17 -0.49 -0.41 0.62 1.29 0.14 0.21 -0.34 -0.44 -0.82 -0.52
Smo122426 (PACid_15420509)
-0.03 -0.07 -0.17 0.1 -0.04 -0.08 0.08 0.27 0.39 0.59 0.49 0.49 -0.28 -0.14 0.11 -0.18 -0.55 -1.29 0.24 -3.16 0.66 -1.46 -0.57 -0.4 0.24 1.06 0.11 0.08 -0.22 -0.21 -0.24 -0.14
Smo123054 (PACid_15420425)
0.07 -0.16 -0.19 -0.07 -0.05 0.42 0.35 0.57 0.8 0.67 0.53 0.21 -0.57 -0.94 -0.5 -0.28 -0.57 -1.68 -0.12 -0.63 -0.4 -1.67 -0.45 -0.27 0.54 1.28 0.05 0.15 -0.01 -0.04 -0.62 -0.56
Smo140028 (PACid_15403536)
-0.74 0.03 -0.11 -0.02 -0.2 -0.04 0.07 0.53 0.72 0.92 0.84 0.64 0.26 -0.27 0.13 0.45 -1.77 -2.27 0.07 -2.35 0.27 -3.38 0.04 0.3 -0.74 1.24 -0.11 -0.62 -0.33 -0.36 -0.65 -0.5
Smo156096 (PACid_15406181)
-0.29 -0.65 -0.62 -0.35 -0.3 -0.34 -0.06 0.51 0.77 0.96 1.03 0.9 -0.27 -0.13 -0.16 -0.21 -1.22 -1.22 -0.88 -1.27 0.2 -1.68 -0.54 -0.31 0.13 1.28 0.47 0.38 -0.61 -0.58 -0.27 -0.1
Smo168007 (PACid_15419117)
0.14 -0.13 -0.03 -0.09 -0.08 -0.09 0.39 0.81 0.89 1.12 1.05 0.91 -2.24 -2.78 -3.75 -1.76 -0.74 -1.48 -0.88 -0.88 0.49 -3.02 -0.77 -0.86 0.62 1.59 -0.16 -0.33 -0.23 -0.42 -0.14 -0.04
Smo170843 (PACid_15409050)
-0.13 -0.97 -0.81 -0.44 -0.65 -0.78 -0.02 1.34 0.42 1.09 0.67 0.95 -2.95 -1.56 -4.7 -2.47 -3.35 -2.0 -1.1 -3.02 -0.8 - -2.59 -2.23 0.29 2.56 2.12 0.76 -1.38 -1.79 -0.84 -0.75
Smo179772 (PACid_15412406)
-0.11 -0.11 -0.24 0.15 0.21 0.05 0.22 0.64 0.57 0.73 0.64 0.66 -0.05 -0.46 -0.12 -0.06 -0.78 -1.16 -0.07 -0.38 0.28 -2.11 -0.48 -0.32 0.33 1.05 -0.18 -0.38 -0.43 -0.41 -0.65 -0.73
Smo234869 (PACid_15406284)
0.2 -0.21 -0.01 0.11 0.17 -0.25 0.23 0.47 0.5 0.84 0.76 0.63 -0.29 -0.45 -0.82 -0.18 -0.64 -0.61 0.17 -1.7 -0.52 -2.86 -0.39 -0.25 0.13 1.02 0.12 0.23 -0.13 -0.3 -0.28 -0.22
Smo235293 (PACid_15404607)
-1.14 0.3 0.67 0.54 -0.83 -1.97 -0.11 1.06 1.22 1.57 1.31 1.55 -1.38 -3.12 -5.21 -4.74 -4.56 -0.54 -4.12 -0.67 1.85 -4.63 -4.81 -7.15 -0.45 2.37 -1.57 -2.42 -3.25 -3.36 -2.56 -1.93
Smo266773 (PACid_15410736)
-0.05 -0.71 -0.64 -0.43 -0.22 -0.19 0.09 0.63 0.71 0.78 0.75 0.54 -0.34 -0.25 0.28 -0.62 -1.4 -1.32 -0.79 -2.15 -2.66 -2.61 -0.39 0.14 -0.37 1.41 1.19 1.0 -0.8 -0.68 -0.27 0.27
Smo271403 (PACid_15423004)
-0.47 -0.44 -0.4 -0.43 -0.56 -0.54 -0.12 0.74 0.89 1.12 1.09 0.96 0.23 -0.34 -1.19 -0.13 -1.52 -1.92 -0.47 -0.18 -0.15 -2.5 -0.64 -0.39 0.9 1.04 -0.54 -0.78 -0.69 -0.74 0.15 0.55
Smo39427 (PACid_15417964)
0.03 -0.49 -0.34 -0.57 -0.67 -0.71 0.59 0.22 0.48 0.76 0.79 0.62 -0.58 -0.73 -1.93 -0.41 -1.47 -0.67 -0.36 -1.45 0.82 -5.94 -1.44 -1.12 0.8 1.45 0.63 0.63 -0.33 -0.01 0.23 0.01
Smo402004 (PACid_15423403)
0.05 -0.15 0.33 0.76 0.6 0.16 0.49 1.24 1.26 1.4 1.39 1.01 -1.42 -2.43 -4.87 -2.26 -1.17 -2.51 -3.51 - -0.68 - -0.02 -0.03 -0.77 1.37 -0.17 -1.36 -0.91 -1.04 -0.53 -0.34
Smo403146 (PACid_15404859)
0.05 -0.47 -0.26 -0.11 -0.09 -0.05 0.26 0.74 0.76 0.81 0.79 0.65 -1.53 -2.29 -3.56 -1.59 -0.41 -0.54 -0.93 -0.72 0.99 -2.67 -0.62 -0.75 1.03 1.36 0.05 -0.01 -0.14 -0.28 -0.16 -0.34
Smo406059 (PACid_15413048)
-0.14 0.31 0.41 0.37 0.43 0.06 0.52 0.66 0.84 0.95 0.93 0.61 0.31 -1.3 -1.72 -0.51 -0.44 -1.15 -0.0 -1.97 -0.27 -2.23 -0.14 -0.03 -0.42 0.54 -0.35 -0.48 -0.2 -0.27 -0.59 -0.73
Smo406712 (PACid_15418266)
-0.04 0.35 0.28 0.24 0.16 0.02 0.19 0.53 0.66 0.85 0.78 0.66 0.18 -0.18 -0.81 -0.2 -0.95 -1.05 -0.51 -5.27 -2.27 -2.28 -0.25 -0.29 0.92 0.9 0.12 0.33 -0.43 -0.63 -0.83 -0.58
Smo407356 (PACid_15418232)
-0.11 -0.17 -0.04 0.05 -0.05 0.08 0.47 0.77 0.88 1.08 1.08 0.71 -1.21 0.35 -0.8 -0.93 -0.91 -1.16 -1.34 -0.56 -0.2 -3.58 -0.96 -1.47 0.55 1.4 0.34 0.1 -0.77 -0.97 -0.7 -1.01
Smo414176 (PACid_15415205)
0.19 -0.08 -0.37 -0.15 -0.18 -0.3 0.09 0.44 0.58 0.77 0.8 0.63 0.36 -0.21 -0.56 0.2 -0.97 -2.98 -0.23 -0.89 -1.04 -1.35 -0.47 -0.17 0.77 1.32 0.12 -0.14 -0.62 -0.46 -0.49 -0.21
Smo417221 (PACid_15402249)
0.08 0.17 0.15 0.62 0.27 -0.05 0.27 0.75 0.98 1.36 0.95 0.93 -0.54 -1.19 -3.43 -1.56 -0.75 -2.24 -2.4 -5.7 -0.72 -5.9 0.32 0.35 -0.55 1.4 -0.58 -1.09 -0.29 -0.66 0.01 0.09
Smo419731 (PACid_15411967)
-0.53 -0.18 -0.39 -0.39 0.2 -0.19 0.26 0.91 0.94 1.35 0.96 0.65 -0.22 -1.13 -0.37 -0.37 -1.21 -1.18 -0.06 -1.43 -1.36 - -0.86 -0.64 1.15 0.7 -0.04 0.32 -0.36 -0.57 -0.26 -0.28
Smo421511 (PACid_15416462)
-0.28 -0.14 0.1 0.14 0.14 0.12 0.36 0.56 0.79 1.01 0.85 0.66 -1.28 -0.97 -0.35 -0.64 -0.72 -1.15 -0.15 -1.47 -0.13 -1.21 -0.41 -0.21 0.56 0.95 0.19 0.23 -0.57 -0.65 -0.6 -0.5
Smo422823 (PACid_15421623)
0.6 0.0 -0.24 -0.15 -0.1 -0.19 -0.03 0.43 0.67 0.86 0.88 0.9 -0.27 -1.28 -1.79 -0.49 -1.24 -2.56 -0.89 -1.99 -1.27 -3.12 -0.66 -0.42 1.23 1.88 0.44 0.3 -0.91 -0.87 -0.71 -0.61
Smo424142 (PACid_15422162)
-0.93 -1.37 -1.0 -0.68 -0.54 -0.98 0.43 1.42 1.3 1.61 1.68 1.02 -3.06 -2.32 -2.58 -2.12 -0.98 -2.65 -1.39 -1.75 -1.39 -3.22 -1.27 -1.37 0.9 1.66 0.04 0.03 0.04 -0.05 -0.45 -0.25
Smo426362 (PACid_15407261)
0.08 0.22 0.44 -0.61 -0.18 0.12 0.13 0.98 -0.12 0.31 0.99 0.77 -0.92 -2.63 -2.1 -1.27 -1.21 -1.03 -0.75 -0.29 1.04 -1.03 -1.08 -0.58 -0.42 1.8 0.17 0.22 -0.36 -0.75 0.05 -0.77
Smo429570 (PACid_15417724)
0.59 -0.03 -0.77 -0.27 -1.81 -0.78 0.3 0.62 0.29 1.0 0.89 1.07 -1.48 -1.85 -2.4 -0.89 -1.32 -3.16 -0.4 - 1.5 0.14 -1.31 -1.21 -0.55 2.38 -0.05 -0.81 -0.72 -0.89 -0.84 -0.39
Smo437402 (PACid_15418123)
-0.13 -0.08 -0.06 -0.12 -0.16 -0.28 0.04 0.18 0.3 0.54 0.44 0.38 0.2 -0.14 -0.13 -0.06 -0.95 -0.86 -0.04 -0.56 -0.42 -3.36 -0.46 -0.25 0.87 1.09 0.47 0.14 -0.6 -0.58 0.02 0.28
Smo438394 (PACid_15420525)
-0.27 -0.68 -0.44 -0.17 -0.2 -0.44 0.27 0.92 1.09 1.27 1.36 1.24 -0.81 -1.61 -3.13 -0.9 -1.12 -2.12 -1.08 -1.59 -0.32 -3.49 -0.85 -0.88 0.54 1.29 0.22 -0.2 -0.44 -0.63 0.16 0.38
Smo438413 (PACid_15421011)
-0.55 -0.27 0.21 0.07 -0.12 -0.41 0.57 1.38 1.48 1.35 1.09 0.37 -0.59 -4.24 -5.76 -2.13 -1.14 -5.87 0.32 -6.4 -3.57 - -1.01 -1.39 0.58 1.89 0.49 0.27 -0.4 -0.82 -0.95 -1.14
Smo440035 (PACid_15401871)
0.17 0.1 0.05 0.15 -0.01 0.08 0.33 0.46 0.49 0.63 0.4 0.24 -0.58 0.15 0.28 -0.22 -0.97 -1.21 -0.13 -1.4 -2.48 -2.44 -0.72 -0.52 -0.12 1.27 0.72 0.63 -0.48 -0.4 -0.16 -0.2
Smo440827 (PACid_15407870)
-0.09 -0.18 -0.04 0.05 0.22 0.22 0.4 0.68 0.72 0.88 0.81 0.74 -0.46 -1.42 -1.07 -0.42 -0.57 -0.51 -0.49 -2.03 -0.19 -2.88 -0.35 -0.09 -0.9 1.21 -0.03 0.12 -0.07 -0.05 -0.21 -0.1
Smo441558 (PACid_15408605)
-0.23 -0.59 -0.65 -0.59 -0.16 -0.21 0.13 0.64 0.95 0.79 0.83 0.55 0.04 -0.33 -0.12 -0.28 -1.14 -1.04 -0.02 -0.8 -0.87 -2.81 -0.69 -0.36 0.55 0.78 0.72 0.16 -0.39 -0.4 -0.09 0.39
Smo441969 (PACid_15411802)
0.05 -0.06 -0.11 -0.05 -0.25 -0.33 -0.01 0.41 0.48 0.91 0.53 0.68 0.35 -0.06 -0.45 -0.24 -1.39 -3.61 -0.5 -0.88 -0.09 -2.57 -0.82 -0.36 0.94 1.63 0.47 0.13 -0.77 -0.84 -0.78 -0.66
Smo442275 (PACid_15409353)
-0.21 -0.01 -0.11 0.01 0.09 0.01 0.42 0.58 0.57 0.67 0.51 0.41 -0.27 -0.71 0.21 -0.31 -0.91 -0.84 -0.33 -1.68 -0.71 -2.84 -0.74 -0.63 0.35 1.08 0.56 0.43 -0.61 -0.57 0.06 0.39
Smo442750 (PACid_15413184)
-0.26 0.07 0.16 0.21 -0.03 0.11 0.31 0.6 0.84 1.02 0.96 0.68 -0.0 -0.81 -1.55 -0.06 -0.85 -1.21 -0.64 -1.89 0.43 -1.06 -0.16 0.05 -0.49 1.19 -0.53 -0.77 -0.48 -0.57 -0.64 -0.26
Smo443336 (PACid_15412969)
0.28 -0.01 -0.13 -0.06 -0.14 -0.27 -0.14 0.07 0.36 0.36 0.47 0.47 0.09 -0.25 -0.18 0.19 -0.73 -0.82 0.03 -1.71 0.15 -0.64 -0.28 -0.2 0.45 0.89 -0.03 -0.25 -0.4 -0.4 0.04 0.52
Smo445040 (PACid_15416470)
0.52 0.13 -0.07 0.25 0.22 0.1 0.26 0.43 0.64 0.66 0.71 0.73 -1.71 -2.14 -2.19 -1.0 0.02 -0.64 -0.64 -0.97 -0.17 -0.75 0.14 0.13 -0.77 0.96 0.02 0.05 -0.01 -0.01 -0.03 -0.26
Smo445692 (PACid_15421139)
0.7 0.03 -0.45 -0.29 -0.5 -0.28 0.15 0.7 0.99 1.14 1.36 1.34 -1.32 -0.27 -0.12 -1.05 -1.87 -3.97 -0.73 -1.84 -1.52 -0.67 -2.66 -1.81 -0.24 1.22 0.79 0.66 -1.01 -0.76 -0.74 -0.35
Smo446494 (PACid_15422573)
0.05 0.16 0.13 0.12 -0.1 -0.18 0.47 0.77 0.8 0.96 0.85 0.85 -0.67 -0.38 -1.63 -1.21 -0.6 -10.15 -0.88 -2.16 -0.07 -3.24 -0.62 -0.92 0.35 0.92 0.27 0.06 -0.12 -0.24 0.29 0.32
Smo447201 (PACid_15401444)
0.07 -0.34 -0.01 -0.04 -0.69 -1.04 0.02 1.12 0.9 1.41 1.34 1.27 -2.27 -2.73 -3.42 -1.93 -1.33 -3.46 -1.43 -0.99 0.53 -4.28 -1.71 -1.61 0.3 2.26 -1.23 -1.78 -0.06 -0.31 -0.14 -0.28
Smo448181 (PACid_15403729)
-1.07 -0.62 0.06 0.24 -0.15 0.09 0.72 1.23 1.14 1.2 0.95 0.39 -0.18 -3.69 -5.26 -0.73 -0.89 -1.32 -0.29 -1.65 -0.09 -3.09 -0.65 -0.75 -0.61 1.77 -1.35 -1.51 -0.41 -0.6 0.26 0.64
Smo449061 (PACid_15405867)
0.0 -0.77 -0.82 -0.8 -1.45 -1.48 0.15 0.38 0.8 0.97 1.11 1.14 -0.25 0.12 -1.71 -0.69 -1.67 -1.19 -0.22 -0.31 0.63 -1.22 -2.25 -1.79 0.53 1.43 -0.7 -0.59 -0.07 -0.11 0.68 0.51
Smo77390 (PACid_15417974)
-0.97 -0.74 -0.45 -0.25 -0.16 -0.03 0.38 0.61 0.72 0.6 0.4 0.15 -0.0 -0.67 0.39 -0.29 -0.75 -0.47 -0.01 -0.47 -0.79 -1.58 -0.32 -0.07 0.24 1.05 0.71 0.59 -0.49 -0.37 -0.38 -0.09
Smo79490 (PACid_15402260)
-0.33 -0.31 -0.37 -0.22 -0.19 -0.35 0.11 0.49 0.63 0.78 0.77 0.68 -0.09 0.13 -0.06 -0.01 -1.21 -1.15 -0.23 -0.35 0.7 -1.11 -0.54 -0.28 0.16 1.08 0.02 -0.19 -0.8 -0.83 -0.38 -0.13
Smo80086 (PACid_15402347)
-0.3 -0.73 -0.07 -0.04 -0.05 -0.04 0.53 0.81 0.87 0.98 0.74 0.6 0.15 -1.27 -1.25 -1.07 -0.91 -0.99 -1.06 0.42 -0.44 -1.85 -0.41 -0.37 -0.27 0.92 -0.07 -0.09 -0.35 -0.41 0.22 0.52
Smo84280 (PACid_15415668)
-0.75 0.57 0.72 0.73 -0.09 -0.51 0.45 0.74 0.7 0.89 1.03 0.77 -0.83 -1.3 -2.0 -0.32 -2.14 -1.44 -0.4 -1.84 -0.84 -5.66 -1.19 -0.96 -1.79 2.09 -0.5 -1.03 -0.84 -1.14 0.23 0.69
Smo91760 (PACid_15417807)
-0.44 0.31 0.34 0.13 0.26 0.08 0.12 0.65 0.76 0.8 0.67 0.56 0.14 -0.48 0.18 0.04 -1.08 -0.87 0.05 -5.06 -0.22 -4.44 -0.05 0.12 -1.66 0.98 0.22 -0.39 -0.21 -0.38 -0.58 -0.48
Smo94261 (PACid_15422716)
-0.15 -0.63 -0.45 -0.26 -0.25 -0.41 0.51 1.11 0.45 1.08 0.54 1.23 -1.98 -1.57 -5.53 -1.99 -2.42 -3.0 -0.51 -6.68 -3.85 - -1.33 -1.06 0.91 1.91 1.93 0.83 -1.12 -1.4 -0.54 -0.2
Smo96899 (PACid_15411019)
0.04 -0.06 -0.32 0.25 0.26 0.3 0.41 0.72 0.95 1.1 1.03 0.62 -0.18 -0.55 -0.02 -0.21 -1.11 -1.79 -0.33 -2.12 -2.1 -3.14 -0.67 -0.47 0.8 0.93 -0.06 -0.11 -0.85 -0.85 -0.56 -0.43
Smo98090 (PACid_15410729)
-0.04 -0.02 -0.06 -0.14 -0.08 -0.22 0.14 0.57 0.58 0.63 0.72 0.46 -0.23 -0.17 -0.21 -0.26 -1.02 -0.79 -0.07 -2.49 -0.59 -3.08 -0.39 -0.22 0.08 1.15 0.44 0.44 -0.32 -0.1 -0.04 -0.05
Smo98590 (PACid_15414626)
0.5 -0.15 -0.07 -0.01 -0.09 -0.03 0.12 0.47 0.78 0.97 1.0 1.13 -2.86 -1.77 -2.36 -2.15 -0.09 -0.31 -1.08 -1.2 0.24 -1.84 -0.47 -0.7 0.0 1.28 -0.29 -0.39 0.01 -0.18 0.13 0.25

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.