Heatmap: Cluster_47 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo100448 (PACid_15422570)
-0.02 -1.58 -1.69 -0.05 -0.43 -0.54 0.74 0.9 0.57 0.72 -0.45 0.38 -1.66 -2.85 -1.36 -0.53 0.17 0.14 -0.09 - - - 0.06 -0.42 - 0.36 0.74 1.03 0.29 0.9 1.28 1.17
Smo100734 (PACid_15402505)
-2.19 -1.9 -1.03 -0.96 -1.03 -0.42 0.44 -0.19 0.02 0.21 -0.49 -0.57 -0.19 -0.19 0.37 0.05 0.92 0.45 -0.98 - -1.2 - 0.45 -0.45 -2.02 -0.56 1.24 0.84 0.7 0.67 1.18 1.34
Smo102321 (PACid_15405257)
-0.83 -1.91 -1.26 -0.65 0.76 0.62 0.87 1.0 -0.4 -0.18 -1.33 -0.98 -2.43 -4.44 -1.33 -1.22 0.73 1.96 -0.07 - -1.51 -2.08 0.03 -0.26 -0.9 -1.26 0.72 0.18 0.91 0.92 0.86 0.26
Smo102556 (PACid_15406857)
-1.0 -1.2 0.17 -0.53 0.44 -0.16 1.15 0.96 0.16 -0.29 -0.62 -0.49 -2.29 -2.21 -1.21 -1.36 0.43 1.77 -0.49 - - -0.61 0.32 -0.29 - -1.54 0.62 -1.93 0.84 0.67 1.49 0.82
Smo103597 (PACid_15409946)
-0.87 -1.14 -2.11 -0.58 -0.03 0.36 0.87 0.53 0.11 0.88 0.17 -0.45 -0.86 -3.29 -2.62 -0.32 0.49 1.28 0.72 - - - 0.24 0.09 -0.9 -0.94 -0.69 -0.02 1.08 1.13 1.08 0.45
Smo112694 (PACid_15415027)
-0.44 -0.26 -0.47 -0.15 -0.73 -0.0 0.31 0.27 0.05 -0.09 -0.05 -0.06 0.07 -0.83 -0.88 0.2 0.53 0.49 0.5 -1.43 -0.73 -1.65 0.62 0.59 -0.38 -0.58 -0.62 -0.12 0.91 0.76 0.21 0.27
Smo114070 (PACid_15416206)
-0.01 -0.49 -0.22 0.43 -0.42 0.39 0.59 0.95 0.04 -0.19 -0.11 0.41 0.41 -1.24 -0.16 0.01 0.28 0.81 0.4 -1.44 - - 0.65 0.12 - -1.36 -0.73 -0.41 0.47 0.61 0.47 0.53
Smo115449 (PACid_15421993)
-1.15 -2.11 -0.75 -0.68 -0.05 0.8 1.15 0.92 0.37 -0.57 -0.44 -1.06 -1.04 -3.47 0.29 -1.24 0.15 0.56 -0.61 - -3.07 - 0.01 0.02 -1.14 -1.01 1.19 1.39 0.45 0.89 0.94 0.61
Smo121358 (PACid_15416885)
-0.18 -0.3 -0.06 0.03 0.25 0.36 0.35 0.16 0.07 0.39 -0.36 0.02 -0.12 -0.83 0.51 0.07 0.56 0.34 0.4 -4.14 - -0.32 0.23 0.03 -3.38 -0.81 0.15 -0.08 0.84 0.65 0.24 -0.02
Smo126675 (PACid_15411544)
-0.52 -0.55 -3.09 -2.55 -1.69 0.27 0.27 1.44 0.57 0.17 -0.4 -0.13 -1.0 -2.89 0.48 -0.08 -0.3 0.83 -0.13 - - - 0.03 -1.15 -0.85 -0.63 0.84 0.89 0.44 0.71 1.39 1.14
Smo130421 (PACid_15421725)
-0.81 -0.92 -2.18 -1.4 -0.98 1.22 0.72 0.55 0.4 0.32 -0.98 -0.76 -1.83 -2.55 -0.11 -0.99 0.24 0.27 0.06 -2.85 - -0.48 0.05 -0.1 -1.32 -0.2 1.4 1.11 1.01 0.93 0.45 0.27
Smo133320 (PACid_15407402)
-0.38 -2.59 -1.3 -0.88 -0.05 0.57 0.95 0.66 0.38 0.04 0.62 0.38 -1.81 -3.76 -0.69 -0.53 0.3 0.69 0.35 - -0.95 - 0.0 -0.55 -2.25 -0.76 0.05 0.36 0.93 0.79 1.18 0.98
Smo135827 (PACid_15417189)
-2.13 -0.88 -1.29 -1.03 0.29 0.56 -0.34 0.01 -0.21 -0.48 0.6 -0.04 -0.47 -2.61 -0.62 -0.5 0.14 0.86 0.38 - -2.37 - 0.6 0.01 -0.04 -0.49 0.1 0.21 1.14 1.21 1.28 0.78
Smo137492 (PACid_15420137)
-1.81 -2.03 -0.51 -0.62 -0.47 0.61 1.21 0.89 0.99 0.04 0.13 -0.46 -3.11 -3.19 -0.23 -1.62 -0.08 1.16 -0.74 - - -0.2 0.29 -0.46 - -0.48 0.61 -2.15 0.8 0.77 1.4 1.21
Smo19675 (PACid_15405152)
0.63 -1.7 -1.74 -0.4 -1.37 -0.64 0.65 1.16 0.02 0.12 -0.95 -0.07 -0.28 -3.89 -0.44 -0.09 0.43 1.08 0.87 - - - 0.58 0.42 - -1.55 -1.45 -1.43 1.06 0.97 1.47 1.08
Smo20225 (PACid_15405187)
-1.0 -1.59 -1.01 -1.09 -0.67 0.02 0.43 0.87 0.67 0.22 -0.42 -0.66 -0.89 -1.83 -0.02 -0.73 0.65 0.36 0.15 -1.77 -2.89 -1.94 0.15 -0.13 -2.7 -0.46 0.83 0.57 0.94 0.88 1.14 1.04
Smo26754 (PACid_15404253)
-0.44 -1.4 -1.29 -0.31 -0.31 0.76 0.85 0.62 0.65 0.24 -0.35 -0.12 -1.07 -2.71 -0.09 -0.34 0.39 0.35 0.44 -5.95 -2.39 -2.83 0.23 -0.11 -2.95 -0.49 0.83 0.39 1.05 0.82 0.54 0.51
Smo26900 (PACid_15405726)
-0.45 -2.14 -0.48 -0.74 -0.22 0.53 1.15 1.17 -0.15 0.57 -0.46 -0.68 -1.37 -2.35 -0.67 -1.12 0.55 0.33 0.39 - - - -0.63 -0.56 - -0.2 0.93 1.34 1.01 0.88 0.85 0.29
Smo27279 (PACid_15403417)
0.97 -3.35 - -1.9 0.2 -0.19 -0.92 -1.58 -1.06 -3.3 0.06 -0.8 -0.44 -0.01 -3.74 0.1 -0.59 -2.38 1.77 - 0.93 - -0.64 0.61 -1.33 -1.05 -1.9 - 1.2 1.66 1.91 1.58
Smo28760 (PACid_15410283)
-1.68 -0.42 -0.78 -0.28 -0.36 0.9 0.52 0.86 0.0 0.34 -0.66 -2.34 -2.7 -4.29 -0.69 -2.35 0.15 1.94 -0.38 - -0.9 -1.64 -0.44 -0.85 -2.14 0.46 1.06 1.62 0.9 -0.23 0.24 -0.03
Smo29563 (PACid_15411668)
0.56 0.24 0.55 0.26 0.65 0.0 -0.34 -0.67 -0.49 -0.94 -0.66 -0.72 -2.56 -2.56 -3.02 -0.71 0.52 1.44 0.33 - - - 1.1 0.65 - -2.43 -0.85 -1.56 0.96 1.02 1.44 1.17
Smo38830 (PACid_15418121)
0.29 -0.39 0.43 -0.04 0.87 0.27 -0.09 -0.22 -0.15 -0.89 0.05 -0.67 -0.43 -1.03 -0.76 -0.27 1.21 1.63 -0.07 - - - 0.32 -0.29 - -3.46 -1.9 -1.29 1.05 0.99 0.89 1.0
Smo402718 (PACid_15406506)
-1.28 -0.77 -0.47 -1.64 -0.17 0.47 1.15 0.76 1.14 0.13 0.44 -0.32 -4.06 - -2.26 -2.37 0.69 1.9 -0.17 - - - 0.17 -1.17 - - - - 1.39 0.7 1.89 1.08
Smo404203 (PACid_15408495)
-1.34 -1.64 -2.53 -1.58 -0.35 0.91 0.26 0.82 1.3 -0.18 0.19 -0.87 -0.96 - -0.75 -0.55 0.77 1.22 -0.03 -4.26 - - 0.04 -0.24 - -0.8 1.33 0.95 1.04 0.73 0.78 -0.08
Smo405125 (PACid_15410818)
0.43 -1.1 -1.32 -0.72 -2.42 0.88 -2.62 0.92 0.48 0.14 -0.32 0.96 -0.11 - -0.87 -0.61 0.75 0.68 0.77 - -1.14 0.08 -0.81 -0.85 0.58 0.15 - -0.24 1.17 1.16 -1.16 0.78
Smo407271 (PACid_15417498)
-0.35 -0.74 -0.37 -0.39 0.03 -0.03 0.32 0.29 0.11 0.08 -0.01 -0.38 -0.25 -1.12 0.5 -0.13 0.02 -0.29 0.52 -6.88 -2.37 -1.13 0.07 0.11 -1.39 0.21 0.88 0.81 0.14 0.37 0.78 0.83
Smo407419 (PACid_15418932)
-2.56 -1.19 -0.87 -0.97 - 0.61 1.17 0.73 -0.04 -1.44 -0.2 - - -2.12 0.25 - 0.62 2.11 0.7 - - - -0.14 -2.36 - 0.02 1.33 1.78 1.47 1.22 -0.66 -
Smo409833 (PACid_15405456)
-2.14 0.13 0.85 -2.31 0.46 0.52 1.42 -0.01 0.09 -2.25 -0.0 -1.48 - -0.1 -0.78 -0.24 -0.29 2.06 -0.54 -2.67 - - -0.21 -1.84 - - 0.94 0.5 -0.13 0.68 1.22 1.03
Smo411195 (PACid_15406397)
1.65 -0.57 0.41 -0.06 -0.57 -2.88 -1.4 -2.15 0.37 -1.59 -0.04 -0.4 -1.7 - -2.98 -0.49 0.12 -1.77 -0.37 -2.07 - - 1.04 1.14 0.79 -1.15 -0.98 -1.62 0.43 0.87 1.46 2.14
Smo413771 (PACid_15416832)
-2.0 -2.13 - -1.22 0.19 -0.56 0.24 0.52 -0.34 0.79 -3.11 -1.08 -0.37 - -0.75 -1.43 0.77 1.5 0.28 0.11 -0.61 -1.39 0.02 0.02 -0.0 - -0.68 -0.71 1.32 1.3 1.63 0.71
Smo418179 (PACid_15404419)
-1.02 -1.42 -0.88 -0.48 0.24 -0.31 0.11 0.59 1.27 1.25 0.95 0.41 -1.29 -1.8 -1.27 -1.82 0.9 0.57 -2.69 -1.61 -1.1 -1.73 -2.32 -2.97 -0.66 -0.23 -0.64 -1.25 0.81 0.79 1.5 1.06
Smo422726 (PACid_15420937)
-0.64 -0.71 -1.8 -1.0 -4.1 1.31 1.06 1.25 0.75 -0.33 -1.3 -0.81 -0.53 -3.15 -0.74 -1.34 0.68 1.82 -0.03 - - - 0.46 -0.79 - -1.98 0.36 -0.75 1.15 1.09 1.04 0.17
Smo423446 (PACid_15421541)
1.66 1.03 -0.96 -0.83 0.99 1.66 0.39 - - - -1.77 -1.35 -3.29 - - 0.43 - 1.07 2.36 - - - - 0.58 - - - - 0.27 1.25 1.36 1.18
Smo425944 (PACid_15408965)
-0.47 -1.52 -1.4 -0.78 0.05 0.61 1.03 0.58 0.9 0.29 0.06 -0.52 -0.82 -2.49 -0.52 -1.18 -0.08 0.58 0.25 -1.75 -1.37 -2.91 0.11 0.02 -2.01 -0.54 0.51 0.64 0.67 0.81 0.89 0.56
Smo427513 (PACid_15411764)
-2.17 - - - -1.59 0.75 1.0 0.48 0.59 0.9 - - - -0.59 0.3 - -0.5 2.17 1.7 - - - -1.68 -1.55 - 1.98 1.77 0.59 0.32 -1.62 0.67 -
Smo430361 (PACid_15419353)
-0.47 -1.0 -1.41 -1.73 -0.12 -0.11 1.4 1.33 0.49 0.36 -0.1 -0.5 -1.34 -4.08 -0.04 -2.17 -0.09 -0.91 -0.87 - -1.42 -1.9 -0.34 -0.48 0.4 -0.46 1.31 1.26 0.69 0.89 0.59 0.08
Smo442047 (PACid_15407624)
-4.03 -4.41 -5.2 -5.33 -2.44 -1.46 -2.27 -2.44 -2.72 -2.74 -1.98 -2.58 - - -6.54 - 2.01 3.46 -2.22 - - - 2.36 -0.08 -2.18 - -2.5 - 1.5 1.05 0.4 1.14
Smo49196 (PACid_15422912)
-0.39 -0.5 -0.68 -0.13 -0.2 1.17 1.53 1.16 1.35 0.04 0.51 -0.16 -2.02 -4.5 -1.34 -2.45 0.18 1.29 -1.2 - - - -0.86 -1.02 -1.87 -1.6 -0.03 -0.45 0.86 0.58 1.03 0.35
Smo59650 (PACid_15411681)
-0.33 -2.23 -3.47 -1.72 -1.59 1.03 0.16 1.12 -0.2 -0.06 0.01 -0.87 -1.24 -3.09 -1.42 -0.97 0.64 1.89 1.87 - - - -0.43 0.01 -1.16 -1.95 -0.12 -0.41 1.13 1.02 0.42 0.59
Smo69737 (PACid_15419558)
- - - - - - - - - - - - - - - -0.62 1.92 3.01 - - - - 1.55 1.59 - - - - 2.09 1.53 2.05 1.18
Smo70094 (PACid_15417558)
-0.49 -1.99 -1.66 -0.52 -0.43 1.09 0.94 0.94 0.34 -0.36 -0.43 -0.93 -1.79 -2.95 -0.65 -1.58 0.69 1.21 -0.1 -0.12 -3.92 -2.07 -0.47 -0.21 -0.77 -2.25 0.21 -0.22 0.78 1.05 1.42 0.73
Smo71673 (PACid_15402617)
-1.19 -2.52 -1.23 -0.43 -0.09 0.81 0.62 1.0 0.65 0.05 0.04 -0.65 0.62 -1.23 -0.93 -0.19 0.2 1.43 0.63 -5.71 -1.74 - -0.16 -0.42 -1.95 -0.75 -0.45 -0.54 0.83 0.67 0.81 0.7
Smo71754 (PACid_15403333)
-0.79 -1.94 -4.34 -1.29 -0.43 0.54 0.1 1.37 1.26 0.28 -0.35 -1.07 -2.84 -3.0 -0.09 -2.74 -0.31 1.42 -0.52 -1.86 0.48 -1.02 -0.44 -0.26 0.81 -0.85 1.08 0.63 0.86 0.57 -0.17 -0.88
Smo71785 (PACid_15403385)
-1.11 -0.93 -2.3 -1.37 -1.02 0.12 0.59 0.66 0.68 0.05 -0.64 -0.55 -1.56 -1.56 0.48 -0.51 0.26 0.91 0.09 -1.16 - - 0.19 -0.3 -2.99 -0.74 1.11 1.29 1.02 0.88 0.96 0.43
Smo71935 (PACid_15404791)
-0.79 -1.21 -1.09 -0.15 -0.31 0.38 0.78 0.3 0.05 0.64 0.13 -0.23 -0.22 -2.13 0.07 0.28 -0.2 -0.21 0.98 - -2.78 -0.15 0.25 0.18 0.04 -0.48 -0.13 0.48 0.75 0.67 0.41 -0.07
Smo72031 (PACid_15423146)
-1.58 -2.96 -1.37 -0.68 -0.78 0.27 0.85 -0.07 0.9 0.08 -0.54 -1.39 -0.17 -3.33 -1.0 -0.81 0.23 0.89 0.2 - -3.43 -0.63 0.35 -0.04 -0.85 0.02 0.51 0.68 1.25 1.1 1.0 0.72
Smo72055 (PACid_15423201)
-0.96 -0.95 -1.57 -0.82 0.3 0.05 0.47 0.16 0.18 0.26 -1.17 -0.83 -0.5 -3.24 -0.23 -0.62 0.77 1.05 0.52 - -4.36 -3.14 0.6 0.31 0.0 -1.04 0.47 -0.0 0.87 0.68 1.31 0.79
Smo72195 (PACid_15401830)
-1.05 -1.84 -1.89 -1.11 -0.39 0.2 0.93 0.33 0.54 0.05 -0.11 -0.38 -1.2 -1.67 -1.25 -0.59 0.41 0.93 0.5 -1.15 -3.37 0.76 0.03 -0.36 -0.93 -1.02 0.32 0.65 1.09 0.92 0.84 0.11
Smo72439 (PACid_15403872)
-1.08 -3.42 -3.6 -2.2 -1.46 1.0 0.95 0.67 -0.17 0.46 -0.23 -0.02 -1.86 -1.29 -1.34 -1.32 0.62 1.74 0.15 -3.15 -2.87 - 0.71 0.21 -2.15 -2.14 -1.33 0.03 1.62 1.08 1.35 0.04
Smo72489 (PACid_15404003)
-0.75 -0.65 -1.37 -1.26 0.29 0.92 0.54 0.39 0.29 -0.02 -0.27 -0.38 -1.11 -2.66 -0.84 -0.58 0.44 1.31 0.2 - -2.68 -2.38 0.33 -0.07 -1.04 -2.05 -0.08 -0.01 1.26 1.24 0.97 0.59
Smo72702 (PACid_15406161)
-0.46 -0.21 0.09 -0.09 0.04 0.37 0.18 -0.01 0.6 0.45 0.38 0.06 -1.64 -0.77 0.04 -0.42 1.31 0.85 -1.36 - -3.48 -5.01 0.09 -0.31 -3.58 -2.07 -0.97 -1.02 1.05 1.11 1.3 0.44
Smo74749 (PACid_15412175)
-0.27 -0.4 0.2 -0.14 -0.52 0.52 0.43 0.69 0.48 0.74 -0.81 -0.81 -0.91 -2.27 0.16 -0.82 0.36 0.78 0.51 -2.21 -1.2 -1.01 0.11 -0.37 -0.73 -1.48 -0.03 0.19 0.68 0.47 0.49 0.79
Smo78548 (PACid_15422211)
-1.09 -2.54 -1.54 -0.92 -1.0 0.76 0.99 0.67 -0.02 -0.54 -1.89 -1.97 -1.34 -2.12 0.08 -0.52 0.43 0.56 0.35 -1.78 - - 0.4 -0.57 -0.78 -0.65 0.72 1.24 0.88 1.23 1.32 0.89
Smo78778 (PACid_15401563)
-0.7 -1.89 -1.1 -0.27 0.3 1.01 0.37 0.93 1.29 0.48 -0.38 -0.64 -0.51 -1.86 0.08 -0.65 0.33 -0.12 -0.01 - - - -0.0 0.26 -1.52 -0.11 1.54 0.07 0.71 0.97 -0.55 -0.8
Smo86789 (PACid_15402915)
-0.59 -2.42 -1.06 -1.3 -0.55 0.62 0.43 1.1 0.13 -0.41 -0.45 -0.49 -1.8 -1.74 -0.44 -0.55 0.18 0.49 0.85 - - - 0.64 -0.16 - - 0.25 -0.41 1.51 0.91 1.77 1.25
Smo90850 (PACid_15415691)
-0.68 0.1 0.81 0.1 0.07 0.31 -0.24 -0.38 0.07 -0.84 -0.36 -1.0 -1.66 - -6.8 -3.0 0.7 2.11 -3.94 - -3.95 - -2.28 -3.94 -4.21 -0.51 1.55 0.66 -0.33 -0.26 1.65 1.96
Smo91636 (PACid_15417012)
-2.24 -1.54 -2.53 -1.68 -0.68 0.57 0.54 1.05 0.55 0.35 -0.2 -0.7 -1.61 -3.12 -0.91 -1.39 0.09 1.26 -0.29 0.51 0.01 -1.35 -0.18 -0.48 1.2 -1.03 -0.17 -0.04 0.77 0.86 0.82 0.12
Smo91861 (PACid_15418600)
-0.87 -1.59 -1.12 -1.27 -0.46 0.28 0.73 0.82 0.94 0.36 -0.71 -0.61 -3.34 -2.8 -1.32 -2.55 0.46 0.47 -0.4 0.26 0.5 1.03 -0.31 -0.57 -0.08 -0.77 0.45 0.96 0.89 0.92 -0.21 -1.07
Smo92605 (PACid_15419844)
-0.22 -0.36 -1.89 -0.73 0.3 0.5 0.55 0.59 0.29 -0.08 0.77 -0.18 0.53 -1.53 -0.14 0.4 0.15 -0.38 0.62 -3.22 - - 0.66 0.41 - -0.87 -0.14 -0.77 0.61 0.49 0.89 0.88
Smo92851 (PACid_15421367)
-0.97 0.32 -0.87 -0.65 -0.05 0.62 0.24 0.16 -1.12 -1.21 0.58 -1.36 -0.67 -1.08 0.16 0.32 0.29 1.71 0.45 - - - 0.9 0.6 - 0.11 0.15 0.77 0.72 0.73 -0.63 -0.15
Smo96295 (PACid_15406339)
-0.24 -0.57 -0.62 -0.39 0.3 0.07 0.37 0.23 0.28 0.2 -0.23 -0.21 -1.08 -1.2 -0.26 -0.82 0.51 1.1 -0.06 -2.9 0.31 -1.1 0.28 -0.09 -1.21 -0.69 0.09 0.54 0.78 0.44 0.52 0.41
Smo97396 (PACid_15410084)
-1.82 -1.16 -0.92 -0.64 0.03 0.28 0.51 0.52 0.06 -0.11 -0.11 -1.03 -3.15 -3.71 -4.44 -2.04 0.02 1.74 -0.71 -2.06 -4.13 -4.24 1.14 1.27 -2.63 -0.55 0.28 0.56 1.36 1.06 0.73 0.45

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.