Heatmap: Cluster_150 (HCCA cluster)

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101401 (PACid_15403026)
15.35 15.5 18.93 16.35 12.0 16.16 19.37 10.95 13.22 18.24 14.32 15.05 2.51 0.94 0.45 3.98 28.91 17.21 18.38 7.71 2.23 10.15 3.76 3.97 4.0 6.49 7.25 14.35 20.57 21.15 14.56 7.38
Smo107369 (PACid_15420044)
158.6 206.4 234.8 215.78 202.52 231.17 193.24 136.24 174.45 150.2 155.96 129.08 26.62 21.37 18.11 39.69 346.8 339.39 135.06 2.22 9.64 0.07 253.94 128.29 45.92 45.63 54.67 74.94 210.44 229.71 217.93 215.07
Smo108537 (PACid_15402081)
85.92 85.25 89.54 83.07 78.33 82.62 91.36 69.89 82.12 92.81 87.94 80.45 35.62 69.99 58.96 45.84 125.11 68.08 59.22 25.42 10.84 44.06 171.41 126.34 3.07 47.87 99.64 130.5 143.86 141.05 103.06 101.67
Smo111270 (PACid_15408895)
72.98 85.9 79.79 78.71 76.15 71.6 74.49 47.76 69.19 64.96 65.35 60.18 0.88 1.0 2.98 3.71 158.03 116.43 33.22 3.55 2.3 1.7 47.29 23.0 7.65 12.48 16.83 25.76 91.47 103.42 88.41 63.86
Smo111388 (PACid_15409707)
24.23 39.74 51.82 45.58 44.0 45.13 37.31 27.52 30.31 36.94 31.15 25.83 4.22 15.27 27.45 8.81 53.36 45.86 12.31 19.81 19.49 28.79 48.17 24.8 10.79 16.5 17.71 22.87 31.12 34.52 15.62 13.84
Smo113883 (PACid_15419387)
15.29 16.14 15.52 16.85 16.67 21.17 17.09 8.11 13.45 10.82 11.55 10.77 0.11 0.03 0.08 0.19 32.57 31.09 1.64 0.0 1.08 0.05 14.02 2.16 0.54 1.16 8.07 10.51 17.24 17.59 3.97 2.14
Smo121275 (PACid_15416177)
121.04 108.39 88.48 84.32 78.96 75.44 58.8 64.59 69.12 64.54 82.2 71.73 7.97 21.35 19.41 15.77 136.55 74.55 36.02 15.02 5.14 12.29 131.31 85.7 40.58 18.07 94.52 90.43 128.06 139.84 56.5 59.27
Smo13019 (PACid_15405213)
29.75 31.13 34.88 28.06 24.47 26.77 28.44 17.43 24.56 24.55 25.64 20.08 14.12 17.03 3.82 21.92 37.83 36.48 21.64 0.09 1.94 5.7 29.04 14.89 5.71 4.87 9.59 13.28 26.74 28.69 18.63 14.84
Smo138695 (PACid_15402256)
111.74 81.73 107.56 73.68 28.48 42.72 39.45 63.76 65.05 73.17 68.8 90.28 0.96 0.52 0.09 2.7 81.83 47.52 53.94 10.67 45.01 2.2 33.98 20.21 63.66 45.59 86.42 116.72 78.4 76.09 52.43 39.06
Smo146861 (PACid_15404982)
210.96 221.74 172.3 128.57 95.54 104.41 112.3 104.83 103.97 98.11 111.04 135.76 8.52 27.31 18.01 20.5 188.15 157.2 65.18 37.5 50.79 34.94 116.11 83.72 73.68 38.7 140.28 167.86 166.14 170.88 137.54 71.59
Smo164091 (PACid_15407448)
42.67 52.26 43.23 36.69 34.92 37.78 36.63 19.41 20.53 14.66 14.03 19.95 6.02 35.06 23.85 14.56 37.74 25.96 28.25 6.5 23.58 0.39 32.57 21.37 17.32 8.69 17.46 33.48 26.09 27.73 12.29 9.08
Smo173020 (PACid_15411726)
24.34 25.2 30.21 34.33 33.19 34.53 31.92 26.91 23.46 19.72 20.62 20.25 16.26 24.7 30.7 19.52 26.7 22.81 25.41 4.19 11.82 10.85 20.0 15.84 16.96 21.08 33.14 33.39 22.98 23.42 16.29 11.62
Smo174517 (PACid_15418417)
20.4 28.57 30.57 29.59 24.06 25.62 24.08 17.93 20.08 18.03 19.49 18.25 0.2 0.09 0.13 1.25 52.89 44.21 3.34 2.7 1.04 19.97 9.69 4.48 6.29 3.57 13.26 15.87 27.22 27.19 16.62 18.98
Smo182303 (PACid_15418218)
64.21 120.81 137.43 114.34 116.24 128.54 92.59 54.54 77.44 61.57 63.95 43.06 19.95 74.87 0.26 34.33 98.53 159.44 53.37 18.96 23.85 0.81 132.21 82.61 36.07 11.54 38.63 50.56 70.82 80.02 42.42 45.79
Smo232013 (PACid_15416503)
28.52 33.23 31.15 23.11 25.31 25.0 17.14 13.8 17.15 12.01 15.6 13.13 3.11 15.11 15.7 6.29 34.3 30.31 15.64 1.05 0.0 0.24 20.41 20.94 8.25 5.96 13.29 18.33 20.01 25.83 8.97 6.81
Smo232422 (PACid_15419648)
9.48 13.19 11.86 11.21 15.41 11.15 10.18 6.76 10.2 8.26 9.18 8.02 0.79 1.77 1.9 1.41 22.09 11.95 2.8 6.31 2.5 5.94 2.8 1.61 1.35 2.53 5.01 6.23 13.1 13.97 9.79 10.08
Smo232963 (PACid_15423456)
44.62 41.7 49.91 37.09 19.75 19.96 18.04 30.99 28.51 35.09 41.85 44.62 1.77 1.16 1.97 4.85 29.75 0.59 14.61 18.56 23.76 0.16 9.53 4.21 29.22 27.92 21.24 28.12 32.73 26.94 12.41 6.69
Smo23881 (PACid_15418765)
6.17 7.99 8.4 8.1 9.2 9.28 7.21 7.44 6.22 6.22 7.04 5.66 2.87 3.7 2.92 2.25 6.02 8.75 6.28 0.1 1.53 0.62 4.66 3.53 1.42 1.68 3.91 5.03 6.57 8.19 6.36 6.91
Smo270557 (PACid_15421028)
20.43 24.15 30.28 36.45 44.4 42.51 35.82 35.32 28.42 24.9 26.18 22.45 11.31 10.64 9.87 19.86 53.35 30.2 44.81 8.25 23.41 11.98 39.59 31.28 51.17 24.18 43.73 41.85 48.45 50.28 30.0 28.61
Smo271409 (PACid_15423016)
145.1 156.08 193.7 178.6 167.65 187.31 181.13 169.86 165.7 135.2 156.05 135.73 247.03 141.89 112.75 95.97 224.09 151.27 97.02 23.8 44.96 44.14 325.28 230.86 80.07 50.69 207.1 211.72 221.24 257.71 159.38 136.2
Smo3012 (PACid_15409740)
21.03 27.46 23.23 22.44 30.72 37.07 27.87 26.94 23.58 18.6 18.49 17.28 12.55 9.02 17.62 10.74 32.16 36.95 23.0 3.0 12.4 6.8 19.36 16.58 19.52 5.28 22.18 23.08 25.71 27.55 22.82 25.29
Smo402598 (PACid_15405142)
48.12 62.93 84.35 90.8 84.97 95.87 106.25 64.96 90.92 73.11 73.41 52.2 0.45 0.0 0.0 1.4 178.6 151.99 12.4 1.87 1.54 0.0 26.08 3.97 44.95 4.4 52.35 70.83 101.98 118.65 76.96 49.41
Smo407081 (PACid_15416042)
5.14 6.86 7.88 7.77 9.25 9.1 6.86 5.54 7.06 5.85 7.87 4.85 0.15 0.0 0.0 0.32 14.28 8.11 0.55 0.4 0.23 0.0 1.63 0.23 2.45 1.1 1.98 4.02 6.08 7.79 7.0 4.51
Smo407495 (PACid_15419124)
128.64 107.04 141.87 97.49 89.26 75.09 31.43 26.37 54.6 55.26 81.75 84.18 22.19 54.38 30.65 22.82 180.26 128.26 8.56 2.12 7.78 1.01 122.28 36.3 11.95 10.06 40.14 51.55 102.3 91.37 62.94 40.43
Smo409212 (PACid_15423095)
8.74 12.27 19.64 19.82 16.09 17.67 18.51 11.9 12.18 11.32 10.32 8.63 2.9 0.3 2.01 5.43 8.02 8.28 10.62 2.96 7.6 6.79 7.2 9.37 6.22 1.96 3.81 5.9 8.61 7.84 6.33 4.54
Smo411132 (PACid_15406254)
37.94 53.45 58.33 59.84 62.41 59.37 56.28 34.05 37.61 30.01 29.71 28.16 10.79 6.44 10.33 10.07 101.06 62.15 39.95 14.78 4.72 19.07 24.83 11.97 14.73 17.28 18.8 24.93 43.57 53.18 22.62 15.39
Smo411673 (PACid_15410256)
15.44 23.0 22.32 21.86 23.1 24.02 26.1 14.74 21.37 14.79 16.9 14.8 2.07 4.9 11.93 3.78 44.1 26.85 7.94 0.4 0.53 1.4 3.11 3.43 5.23 8.29 11.59 14.6 25.64 33.04 12.84 6.75
Smo412299 (PACid_15410154)
17606.4 18726.57 21954.47 24791.07 21894.1 23709.33 17348.63 17204.83 16199.93 17021.83 15611.8 18364.2 4327.52 2784.84 173.44 5463.59 14513.95 19021.9 27848.45 1015.01 6279.14 127.64 24636.2 15301.55 5613.76 11056.45 15413.5 16362.3 20674.55 21010.7 16944.7 18089.35
Smo412497 (PACid_15411697)
26.2 31.74 39.27 40.1 44.56 36.99 44.12 28.45 40.64 34.97 39.68 30.5 12.61 4.02 4.22 12.28 58.58 46.68 28.6 0.57 0.7 0.0 17.72 7.92 2.01 15.81 12.09 23.34 42.9 46.15 35.65 31.18
Smo413483 (PACid_15414665)
10.34 10.01 10.0 10.52 11.98 15.19 10.37 9.22 8.71 8.12 7.23 8.46 6.74 6.02 9.0 8.37 8.15 6.72 9.62 0.0 5.01 1.51 7.18 7.33 1.21 6.06 11.44 12.8 6.55 6.33 4.32 3.44
Smo413591 (PACid_15415425)
104.86 143.94 152.27 122.55 107.3 123.97 89.9 80.89 98.62 94.18 84.05 89.7 71.65 51.68 73.16 51.08 115.06 127.56 19.35 41.95 69.14 32.1 145.13 57.7 12.4 20.92 23.69 30.31 81.65 79.48 53.36 49.34
Smo416857 (PACid_15403871)
7.29 14.8 16.67 18.57 23.26 26.37 11.84 7.24 10.14 5.48 5.04 3.58 0.76 0.14 0.38 1.11 19.41 8.88 8.16 0.05 3.06 0.22 22.33 9.64 25.78 5.24 21.6 18.82 14.43 16.95 5.65 6.78
Smo419575 (PACid_15410552)
30.89 21.17 17.2 12.6 13.78 14.7 5.08 6.87 8.46 11.04 12.07 12.0 1.49 3.65 5.78 1.26 39.45 24.64 1.19 3.43 4.42 2.33 2.1 1.1 2.71 0.97 7.43 5.57 8.67 8.18 7.83 5.45
Smo420481 (PACid_15413013)
14.63 15.46 17.1 15.03 14.16 12.46 13.69 9.58 11.16 10.04 13.24 11.09 15.55 1.49 9.3 7.88 13.32 7.53 2.8 0.11 0.0 2.31 25.76 7.78 1.03 4.01 5.05 7.66 9.7 9.81 7.54 7.19
Smo424499 (PACid_15402327)
12.99 9.87 8.77 7.11 3.51 4.37 5.19 6.24 9.61 9.02 10.82 14.54 0.29 1.03 1.42 0.41 13.33 5.53 3.34 0.58 1.19 0.0 24.52 18.1 4.22 7.15 3.05 2.9 15.19 14.65 8.25 6.0
Smo431283 (PACid_15421433)
7.7 5.68 7.06 5.11 5.38 6.8 4.6 4.24 5.41 5.2 5.99 5.48 0.04 0.0 0.12 0.02 12.48 7.8 0.36 0.0 1.1 0.0 0.94 0.07 0.57 0.13 2.73 2.93 6.05 6.0 8.14 6.25
Smo437973 (PACid_15422000)
947.06 1341.15 2169.45 1830.28 1640.97 1482.51 1209.36 946.39 1333.67 1152.81 1193.41 738.2 209.46 106.63 4.08 198.13 892.09 1323.83 541.51 187.89 299.08 6.82 1820.13 1177.01 648.4 136.61 1198.87 1046.74 779.43 1099.86 626.68 941.75
Smo438165 (PACid_15418947)
65.75 71.37 62.5 58.83 79.77 78.34 67.93 63.53 54.7 45.54 50.43 43.99 25.9 48.86 35.7 43.79 77.16 83.32 68.56 14.61 27.52 30.39 50.96 52.23 44.96 24.2 59.19 55.87 70.31 70.56 67.0 72.09
Smo439136 (PACid_15421638)
272.48 348.51 401.15 426.04 358.9 371.45 531.06 340.18 525.74 375.69 413.27 305.05 8.55 5.62 7.6 10.94 492.24 622.78 49.98 105.92 44.35 88.54 612.58 830.41 172.91 36.26 338.39 280.62 462.07 571.08 537.43 855.8
Smo439556 (PACid_15402485)
24.69 39.05 47.42 44.19 40.5 41.29 45.61 30.07 31.73 29.28 21.91 24.19 9.77 15.54 25.77 18.29 33.59 18.29 36.02 20.92 18.73 16.92 23.76 17.37 19.9 13.0 16.87 22.47 31.15 33.19 18.4 19.82
Smo440934 (PACid_15408706)
47.16 54.47 59.32 60.37 66.09 72.41 46.98 33.32 42.82 37.81 36.15 29.65 12.2 9.02 13.23 20.58 97.56 51.68 62.02 0.93 11.78 0.08 52.36 44.6 38.44 23.09 45.69 65.26 50.47 50.1 14.06 14.94
Smo441321 (PACid_15406972)
27.54 28.06 25.05 24.04 25.57 23.0 19.45 15.92 21.11 20.03 18.7 15.91 9.66 9.04 3.79 16.02 19.79 16.97 7.83 8.79 4.29 11.41 31.73 27.12 7.92 7.19 13.33 17.32 19.03 20.35 14.89 16.34
Smo446012 (PACid_15419357)
37.95 55.19 48.87 43.59 40.74 40.0 47.06 30.4 29.67 30.67 26.84 25.46 12.02 17.0 10.31 24.3 48.85 27.3 27.77 4.56 8.35 0.59 34.18 17.98 14.86 20.04 30.8 55.02 45.48 46.75 7.48 6.44
Smo56696 (PACid_15402894)
5.57 7.74 8.32 8.03 10.39 10.89 10.45 10.11 8.48 7.77 6.46 7.4 3.51 2.2 2.33 8.35 7.81 8.38 10.44 1.57 0.86 0.0 7.7 5.22 2.79 3.49 4.97 8.47 8.81 8.05 5.83 7.24
Smo64201 (PACid_15423277)
476.31 564.8 494.14 378.94 392.4 431.39 324.74 270.31 413.51 380.62 302.47 265.04 354.46 286.4 3.11 318.1 330.88 423.79 184.14 4.83 56.8 0.59 610.48 354.01 9.52 93.04 124.85 181.43 233.62 250.44 216.23 201.81
Smo72363 (PACid_15403208)
5.96 7.05 5.43 6.81 8.25 9.66 10.79 14.67 17.59 9.56 13.33 7.97 3.98 2.43 5.98 4.54 6.98 9.88 7.5 0.92 0.63 9.24 8.19 8.36 1.66 5.99 7.0 6.4 9.17 8.11 7.64 7.54
Smo74259 (PACid_15408281)
38.23 47.86 55.23 52.32 51.55 62.28 45.26 37.38 32.37 24.42 29.65 26.87 21.94 29.95 36.05 29.36 57.47 49.08 33.93 34.13 27.11 36.5 33.08 30.61 75.88 24.66 68.41 82.03 42.58 44.82 14.22 14.29
Smo78556 (PACid_15422235)
25.92 26.41 26.29 25.44 25.73 22.6 17.68 14.17 20.2 15.95 19.91 16.87 9.56 17.09 3.74 15.47 21.46 18.89 22.28 6.94 5.62 1.75 27.37 21.44 7.45 21.06 20.36 24.67 21.46 23.67 16.64 17.48
Smo80725 (PACid_15407492)
18.34 19.53 18.35 17.01 18.07 18.45 20.59 16.2 23.81 23.92 24.28 23.21 0.43 0.0 0.12 2.79 29.75 25.56 8.22 20.45 4.62 22.87 4.52 3.19 4.88 17.98 9.85 11.3 14.75 15.57 25.27 20.22
Smo81583 (PACid_15409139)
43.83 56.75 62.84 62.85 63.51 52.01 24.27 35.58 48.22 55.72 58.66 55.22 6.76 9.68 15.84 7.47 83.81 61.9 7.09 0.97 3.25 0.36 49.09 9.88 4.15 10.12 17.43 21.09 60.47 55.43 31.72 34.08
Smo85319 (PACid_15419169)
60.32 55.93 56.69 63.22 58.51 53.43 58.87 55.53 82.13 73.26 76.68 71.82 5.06 2.57 5.6 5.11 122.3 81.31 17.93 32.23 18.85 47.73 10.61 7.97 30.0 53.44 38.78 40.73 54.37 54.63 87.93 89.77
Smo86219 (PACid_15421217)
153.79 143.54 150.07 140.48 136.54 138.84 142.01 137.88 147.02 153.98 157.46 144.59 40.24 82.06 55.57 52.16 152.25 100.52 63.74 124.89 99.89 45.22 190.68 150.7 91.15 68.01 126.01 155.41 163.62 170.91 108.81 103.61
Smo89101 (PACid_15406889)
10.48 7.75 8.98 12.34 13.85 14.12 12.52 15.99 23.14 21.4 19.2 12.03 3.15 5.48 6.86 5.58 11.33 10.33 6.67 0.74 3.3 12.55 23.69 17.53 5.17 3.61 13.68 12.91 18.01 20.72 12.07 15.79
Smo90062 (PACid_15409542)
6.09 7.5 7.7 7.99 10.75 7.88 7.47 6.79 9.44 7.47 7.02 6.04 0.02 0.0 0.02 0.07 20.07 14.1 2.83 0.0 3.05 0.11 3.96 1.19 1.96 2.38 4.65 3.88 9.37 7.65 9.0 6.28
Smo90332 (PACid_15411817)
116.8 111.15 80.38 63.08 56.9 67.17 43.34 64.09 85.69 71.31 79.11 75.94 5.38 4.32 4.82 6.84 139.98 111.4 9.72 0.88 101.52 3.65 20.85 5.77 33.28 2.82 11.95 16.35 81.19 58.91 35.6 34.54
Smo98264 (PACid_15412163)
36.71 38.51 36.96 35.5 37.59 39.27 33.38 31.93 26.57 23.6 24.48 23.47 19.89 23.29 25.9 24.8 30.29 26.27 35.72 3.72 17.1 3.23 26.75 24.3 16.95 23.24 39.57 39.9 27.31 28.79 14.82 15.36

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)