Heatmap: Cluster_148 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo103537 (PACid_15409800)
-0.53 -0.78 -0.03 -0.23 -0.14 0.24 -0.02 -0.04 -0.59 -0.46 -0.53 -1.0 -0.32 -0.49 1.53 0.04 -0.57 -1.74 0.2 0.7 0.62 0.96 -0.17 0.06 -0.56 0.48 0.83 0.48 -0.67 -0.63 -0.83 -0.75
Smo103622 (PACid_15410592)
-1.87 -1.03 -1.16 -1.11 0.19 -0.09 -0.12 -0.64 -0.9 -0.59 -2.14 -1.55 -0.94 -0.81 1.42 -0.97 -0.23 0.61 -0.19 1.47 -1.33 1.17 0.23 0.46 1.43 -1.31 0.72 1.0 -0.2 0.06 -1.06 -1.93
Smo107381 (PACid_15420080)
-0.86 -0.86 -1.04 -0.92 -0.81 -0.69 -0.58 -0.34 -0.6 -0.49 -0.74 -0.69 -0.2 -0.17 1.11 -0.2 -0.73 -0.73 -0.38 1.59 0.77 1.29 -0.72 -0.43 1.07 0.81 0.43 0.35 -0.74 -0.66 -0.38 -0.16
Smo115022 (PACid_15419041)
-0.37 -1.25 -1.02 -0.39 -0.08 -0.15 0.03 -0.37 -0.12 -0.34 -0.56 -0.64 0.27 0.96 1.97 1.04 -0.75 -0.02 -1.03 -0.32 - 1.24 0.49 0.76 -3.98 0.17 0.26 0.31 -1.32 -0.57 -1.57 -1.32
Smo115557 (PACid_15422796)
-1.35 -1.13 -0.78 -0.86 -0.72 -0.36 -0.09 0.19 0.22 0.08 -0.28 -0.55 -0.43 -2.05 0.8 -0.7 -1.07 -0.87 0.03 1.52 1.45 1.81 -0.66 -0.13 0.3 0.37 -0.24 -0.14 -1.59 -1.17 -0.35 -0.07
Smo123026 (PACid_15420345)
-1.77 -1.79 - - - - - -1.96 -1.49 - - - - 1.37 3.0 -1.77 - -1.23 - 1.2 - 3.14 -1.78 - 1.21 1.97 0.69 - - - - -1.96
Smo127582 (PACid_15413765)
-0.77 -0.5 -0.33 -0.24 0.0 0.19 0.3 0.14 -0.1 -0.28 -0.37 -0.69 0.1 -0.18 0.77 -0.18 -0.69 -0.57 0.0 1.14 -0.62 1.09 -0.29 -0.1 0.82 0.09 0.46 0.46 -0.85 -0.62 -1.13 -0.7
Smo132875 (PACid_15408465)
-0.51 -0.39 -0.68 -0.3 0.25 0.19 -0.11 -0.08 -0.08 -0.13 0.06 -0.24 -0.0 -0.47 0.7 -0.08 -0.55 -0.78 0.39 -0.14 -0.28 1.45 -0.06 0.17 0.19 0.52 0.44 0.24 -0.6 -0.37 -0.9 -0.62
Smo147110 (PACid_15402470)
-0.1 -0.12 -0.06 0.19 -0.14 0.24 -0.12 0.03 0.05 -0.17 -0.27 -0.33 0.08 0.61 0.78 -0.1 -0.26 0.06 -0.02 -0.21 0.14 0.91 -0.13 -0.28 0.07 -0.66 0.22 -0.11 -0.44 -0.5 -0.38 -0.32
Smo152815 (PACid_15422729)
-0.51 -0.61 -0.76 -0.39 -0.44 -0.24 -0.31 -0.05 0.05 0.33 0.15 0.12 0.26 0.57 0.65 0.17 -0.42 -0.65 -0.17 0.33 0.25 0.64 0.03 0.29 0.74 0.21 -0.65 -0.49 -0.21 -0.09 -0.35 -0.34
Smo171221 (PACid_15407246)
-0.54 -0.23 0.18 -0.04 -0.08 0.12 0.25 0.34 0.1 0.08 0.02 -0.21 -0.17 0.42 1.58 -0.26 -1.1 -1.72 -1.05 0.72 -1.28 0.97 -0.86 -1.14 -0.45 0.45 0.75 0.87 -1.27 -1.06 -1.02 -0.9
Smo236819 (PACid_15412062)
-1.15 -0.62 -0.93 -0.52 -0.15 0.02 -0.23 -0.16 -0.54 -0.75 -1.25 -1.22 -0.09 -0.63 1.33 0.09 -0.34 -0.1 0.59 -1.54 0.38 1.14 -0.1 0.16 0.28 0.65 1.14 1.06 -0.41 -0.17 -1.56 -0.91
Smo271540 (PACid_15401625)
-0.28 -0.09 -0.06 -0.04 -0.2 0.05 -0.09 -0.0 -0.14 -0.24 -0.1 -0.5 0.31 0.28 0.79 0.4 -0.66 -1.27 -0.25 0.23 -0.7 1.17 -0.16 0.06 0.51 -0.2 0.19 0.19 -0.71 -0.59 -0.23 0.02
Smo402918 (PACid_15407978)
-0.56 -0.8 -0.98 -0.62 -0.61 -0.56 -0.52 -0.28 -0.55 -0.47 -0.55 -0.67 0.5 -0.53 1.07 0.32 -0.66 -0.09 -0.08 0.12 0.59 0.78 0.22 0.65 0.53 1.04 0.36 0.08 -0.32 -0.24 -0.39 -0.39
Smo403169 (PACid_15404917)
-0.71 -1.42 -1.18 -0.7 -0.87 0.07 -0.07 0.0 -0.05 -0.3 -0.53 -0.48 -0.72 -0.38 1.07 -0.64 -0.65 -1.12 -0.62 1.4 -0.8 1.6 -0.95 -0.66 0.1 1.05 0.98 1.25 -0.7 -0.35 -0.69 -1.21
Smo404530 (PACid_15410980)
-5.16 - - - - - -3.23 -5.3 -1.63 -5.07 -2.33 -4.01 -4.88 -0.33 2.25 - - -5.07 -5.06 2.34 1.41 2.75 - -5.11 1.95 0.75 1.58 1.33 -5.2 -5.04 - -
Smo404686 (PACid_15411856)
-0.36 -0.68 0.05 -0.67 -0.36 -0.12 0.21 0.03 -0.54 -0.12 0.11 0.09 -0.73 -2.2 -3.59 -1.35 -1.0 0.77 -0.43 -6.26 0.65 1.43 -0.53 -0.44 1.86 0.81 0.6 0.78 -0.99 -1.03 -0.1 -0.29
Smo406520 (PACid_15416743)
-1.0 -0.41 -0.84 -0.42 0.22 0.21 -0.46 0.2 -0.58 -0.84 -1.05 -1.17 0.08 0.38 1.4 -0.16 -1.04 -0.27 0.14 1.19 -0.82 1.3 -0.24 -0.0 0.54 -0.1 0.77 0.81 -0.81 -0.67 -1.78 -1.69
Smo407397 (PACid_15418335)
-0.77 -0.89 -0.77 -0.72 -0.21 -0.2 -0.25 -0.04 -0.33 -0.31 -0.47 -0.65 0.1 0.03 0.56 0.2 -0.66 -0.52 0.34 0.99 0.03 1.47 -0.3 0.03 0.96 0.41 0.12 -0.16 -0.42 -0.29 -0.61 -0.38
Smo407511 (PACid_15419654)
-0.36 -0.28 -0.15 -0.02 0.15 0.35 0.11 -0.1 -0.09 -0.18 -0.21 -0.24 -1.57 0.23 1.34 0.05 -0.11 -0.34 0.07 -0.68 -2.6 1.3 -0.66 -0.98 -0.05 -0.12 0.67 0.68 -0.12 -0.13 -0.39 -0.56
Smo410468 (PACid_15405674)
-0.9 -0.79 -0.69 -0.48 -0.2 0.07 -0.14 -0.32 -0.54 -1.04 -0.73 -0.98 -0.07 -0.54 1.33 -0.32 -0.44 -1.1 -0.29 1.09 0.22 1.81 -0.54 -0.69 0.4 0.03 0.8 1.21 -0.71 -0.52 -1.08 -1.35
Smo410623 (PACid_15407056)
-0.94 -0.36 0.55 -0.72 -1.12 -0.09 -0.76 -1.8 -0.14 -0.98 -1.73 -0.27 -0.69 2.01 2.22 0.31 -1.76 0.74 -1.5 -1.2 1.19 2.31 -2.23 -3.74 -0.81 -1.01 0.3 -1.64 -3.97 -2.82 -2.86 -
Smo412557 (PACid_15412343)
-0.94 -0.94 -0.42 -0.48 0.55 0.1 0.3 0.09 -0.55 -0.18 -1.0 -1.07 0.06 -1.21 1.33 0.29 -0.62 -0.86 0.6 -1.16 -1.75 1.58 -0.26 -0.03 -1.85 0.57 1.22 1.23 -0.34 -0.19 -2.29 -1.6
Smo415237 (PACid_15418773)
-0.08 -0.13 -0.29 0.12 0.27 0.39 0.32 0.07 -0.13 -0.38 -0.13 -0.51 0.07 0.31 0.89 -0.25 -0.57 -1.6 -0.53 1.03 -0.77 0.88 -0.15 -0.32 -0.11 0.07 0.61 0.82 -0.75 -0.76 -1.3 -1.18
Smo415372 (PACid_15419608)
-0.09 -0.18 -0.29 -0.05 -0.32 -0.17 -0.2 0.06 0.25 0.39 0.16 0.06 0.36 -0.01 0.86 -0.1 -0.64 -1.0 0.19 1.0 -1.14 0.72 -0.05 -0.13 -0.14 0.5 0.08 -0.16 -0.5 -0.47 -1.0 -0.65
Smo415432 (PACid_15420280)
-0.32 -0.49 -2.19 0.03 - -0.73 -0.07 - -0.7 0.21 -2.18 -1.97 - - -1.36 - - 2.52 - 1.2 1.67 2.89 -2.2 -2.14 2.35 - -0.28 - - - - -
Smo418914 (PACid_15410549)
0.01 -0.47 -0.19 -0.19 0.06 -0.04 0.11 0.21 0.06 -0.14 -0.22 -0.34 0.06 0.42 1.4 0.24 -0.62 -0.78 0.11 -0.14 -0.66 0.77 -0.33 -0.08 -0.59 0.68 0.47 0.13 -0.61 -0.57 -1.16 -0.62
Smo419062 (PACid_15406605)
-1.14 -0.95 -1.42 -0.86 -0.16 -0.16 0.17 -0.23 -0.23 -1.12 -0.9 -1.24 -0.51 -0.87 0.97 0.15 -0.9 -1.1 0.58 1.33 0.03 1.59 -0.3 0.15 -0.06 0.98 0.68 0.36 -0.41 -0.16 -0.56 -0.63
Smo423875 (PACid_15402403)
-4.57 -4.94 - -3.92 -7.03 -4.28 -3.73 -4.5 -5.32 -4.07 -5.54 -4.92 -1.55 1.26 2.33 -2.45 -3.41 -1.82 -0.95 2.26 1.12 2.59 -3.38 -4.11 0.25 1.29 1.29 1.71 -4.73 -4.25 -4.48 -4.35
Smo424829 (PACid_15405209)
-0.46 -0.3 -0.65 -0.21 -0.22 -0.38 -0.4 -0.24 -0.56 -0.11 -0.2 0.06 0.74 -0.79 -1.19 0.62 -0.3 0.71 0.21 0.64 0.21 0.96 -0.41 -0.15 0.91 0.14 -0.31 0.11 -0.28 -0.47 -0.5 -0.08
Smo425583 (PACid_15405979)
-0.57 0.05 0.01 0.22 0.4 0.4 0.17 -0.51 -0.09 -0.22 -0.11 -0.47 0.07 0.59 0.92 0.11 -0.74 -1.98 0.18 -1.47 -2.09 1.3 -0.52 -0.46 0.53 -0.24 0.85 1.06 -1.0 -0.85 -1.4 -0.77
Smo428852 (PACid_15417049)
0.06 0.58 0.2 0.09 -0.37 -0.13 -0.25 -0.31 -0.12 -0.08 -0.19 -0.15 -3.69 -1.41 -0.14 -2.15 -0.42 1.67 0.02 0.13 0.83 1.15 -0.95 -1.17 0.6 -0.26 0.78 0.73 -0.58 -0.47 -1.81 -1.85
Smo430459 (PACid_15420109)
-2.8 -3.06 -2.23 -1.03 - -1.85 -0.92 -0.85 -0.97 -0.91 -0.99 -0.68 - -0.44 1.93 0.4 -0.62 - 1.0 - 0.06 2.44 - -1.06 1.13 0.75 1.14 2.17 -1.49 -0.71 -2.95 -1.5
Smo431592 (PACid_15401533)
-1.03 -0.86 -0.4 -0.51 -1.14 0.24 0.02 -0.64 -0.25 0.29 -0.02 -0.32 -1.1 0.65 1.38 -0.96 -0.35 0.97 0.28 - -2.58 1.97 -1.43 -1.82 1.44 0.63 0.3 -0.01 -0.88 -0.79 -1.79 -0.73
Smo437971 (PACid_15421999)
-0.64 -0.58 -0.67 -0.59 -0.48 -0.23 -0.1 0.0 -0.18 -0.3 -0.51 -0.48 -0.18 0.29 1.35 0.02 -0.59 -0.75 -0.4 1.08 0.01 1.44 -0.59 -0.47 -0.33 0.79 0.38 0.24 -0.45 -0.49 -0.56 -0.43
Smo440750 (PACid_15407150)
-0.58 -0.75 -0.74 -0.57 -0.33 -0.35 -0.34 0.1 -0.07 -0.21 0.06 -0.35 -0.42 0.47 1.65 -0.42 -1.09 -1.62 -0.5 0.27 -0.4 1.3 -0.94 -0.85 -0.02 1.26 0.87 0.69 -0.9 -0.85 -0.54 -0.41
Smo441102 (PACid_15405429)
0.09 0.0 -0.19 -0.1 0.05 0.1 -0.09 0.13 0.15 0.1 0.22 -0.03 -0.52 -1.2 -0.22 -0.62 -1.19 -0.78 -0.18 1.22 0.31 1.84 -0.87 -0.7 0.23 0.24 0.22 -0.3 -1.03 -1.24 -0.55 -0.18
Smo441968 (PACid_15411801)
-0.3 -0.17 0.01 0.1 0.26 0.25 0.22 0.24 0.09 -0.11 -0.14 -0.4 0.04 -0.49 0.98 0.14 -0.33 -0.77 0.32 -0.28 -0.52 0.89 -0.1 0.06 -0.43 0.17 0.09 -0.03 -0.32 -0.3 -0.5 -0.31
Smo66840 (PACid_15411609)
-0.58 -0.58 -0.57 -0.33 -0.35 -0.22 -0.36 -0.01 -0.32 -0.34 -0.37 -0.51 -0.11 0.38 1.44 -0.05 -0.62 -1.03 -0.06 0.99 0.22 1.03 -0.45 -0.3 0.25 0.24 0.61 0.53 -0.48 -0.49 -0.77 -0.71
Smo6997 (PACid_15403200)
-0.63 -0.59 -0.69 -0.5 -0.36 0.04 -0.21 -0.23 -0.37 -0.49 -0.14 -0.68 0.1 0.28 0.93 0.18 -0.33 -0.17 0.07 -2.61 -2.78 1.61 -0.09 0.02 -2.19 1.04 1.05 0.77 -0.17 -0.25 -0.31 -0.21
Smo74672 (PACid_15411502)
-0.7 -0.64 -0.71 -0.83 -0.07 -0.46 -0.3 -0.45 -0.61 -0.33 -0.58 -0.76 0.02 -0.09 1.06 0.28 -0.53 -0.55 0.1 0.96 -0.25 1.1 -0.26 -0.15 0.44 0.68 0.85 0.81 -0.49 -0.47 -0.67 -0.56
Smo75281 (PACid_15411388)
-0.19 -0.33 -0.4 0.0 0.11 -0.11 -0.28 0.06 0.07 -0.04 -0.12 -0.25 0.11 0.1 1.02 0.28 -0.35 -1.15 0.24 0.26 -1.14 0.74 -0.2 -0.02 0.05 0.46 0.35 0.24 -0.35 -0.28 -0.55 -0.41
Smo81253 (PACid_15406729)
-1.65 -1.2 -0.75 -0.35 -0.25 0.18 0.4 0.26 -0.11 -0.6 -0.78 -1.29 0.15 -0.1 1.32 0.16 -0.34 -0.44 0.17 1.42 -0.41 1.53 0.09 0.48 0.39 -1.17 -0.49 -0.56 -0.29 0.05 -1.12 -1.98
Smo84102 (PACid_15414768)
-0.6 0.19 0.07 0.14 0.36 0.18 0.46 -0.08 -0.5 -0.56 -0.77 -1.08 -0.05 0.24 1.44 0.54 0.17 -0.08 0.99 0.67 -4.61 0.17 -0.63 -0.69 1.04 -0.88 -0.29 -1.01 -0.29 -0.12 -1.2 -1.35
Smo85116 (PACid_15417652)
-1.03 -2.0 -1.9 -0.97 -0.5 -0.03 -0.38 -0.15 -0.21 -0.5 -0.26 -1.02 0.52 -0.07 1.32 0.49 -0.96 0.04 0.22 0.38 -0.61 1.43 -0.32 0.38 0.22 0.83 0.8 0.48 -0.47 -0.44 -0.96 -1.21
Smo88393 (PACid_15405735)
-0.22 -0.08 -0.0 0.18 0.29 0.23 0.27 0.03 0.04 0.03 -0.09 -0.19 -0.2 0.14 0.05 0.07 -0.22 -0.63 -0.16 0.14 -0.62 0.69 0.04 0.14 0.44 -0.1 0.36 0.28 -0.33 -0.33 -0.72 -0.67
Smo88562 (PACid_15407125)
0.02 -0.11 -0.27 0.01 -0.16 0.18 -0.22 -0.22 -0.26 -0.55 -0.75 -0.65 0.96 -0.39 1.38 0.71 -0.33 -0.9 0.51 0.36 -2.32 1.23 -0.25 0.02 1.06 -0.66 -0.52 -0.27 -0.52 -0.54 -1.4 -1.6
Smo91891 (PACid_15418676)
-1.14 -1.84 -1.52 -1.01 -0.85 -1.16 -0.48 -0.14 -0.27 -0.54 -0.64 -0.77 -0.99 -1.26 0.69 -0.63 -0.73 -0.17 0.05 1.23 1.16 1.82 -0.85 -0.8 0.43 1.06 0.92 0.69 -0.55 -0.51 -0.33 -0.02
Smo94218 (PACid_15422627)
-0.37 -0.21 -0.1 -0.42 0.02 0.15 -0.12 -0.25 -0.06 -0.13 -0.31 -0.45 0.22 0.42 1.51 0.19 0.04 0.32 0.16 0.08 -1.01 0.27 0.12 0.31 -1.77 -0.37 -0.29 0.04 -0.14 0.01 -0.47 -0.22
Smo94349 (PACid_15423391)
-1.75 -1.62 -2.08 -1.41 -1.61 -1.52 -0.82 -0.88 -1.51 -1.77 -1.74 -2.44 0.09 -0.81 1.26 0.41 -0.3 0.69 0.08 0.61 0.37 2.39 0.01 0.51 1.09 -0.07 0.27 0.02 -0.26 -0.21 -0.37 -0.41
Smo94369 (PACid_15423442)
-0.28 -0.79 -0.42 -0.41 0.11 -0.61 -0.93 -0.19 -0.45 -0.68 -0.23 -0.68 -0.08 0.9 1.15 0.13 -0.54 -0.47 -0.32 -0.12 -0.07 0.93 -0.37 -0.36 0.48 0.58 0.93 0.68 -0.36 -0.45 -0.24 -0.51
Smo96090 (PACid_15404719)
-0.42 -0.16 -0.23 0.03 -0.06 0.07 0.01 0.05 -0.19 -0.26 -0.34 -0.38 -0.26 -0.48 0.71 -0.05 -0.76 -1.1 -0.02 0.74 0.56 1.7 -0.63 -0.45 0.3 0.45 0.41 0.13 -0.89 -0.82 -0.88 -0.95
Smo98270 (PACid_15412184)
-0.41 -0.35 -0.46 -0.2 -0.63 -0.32 -0.37 -0.11 -0.1 -0.33 -0.32 -0.42 0.09 0.76 0.93 0.02 -0.55 -0.79 0.11 0.2 -0.11 1.26 -0.32 -0.23 0.87 0.34 0.21 -0.17 -0.51 -0.49 -0.18 -0.19
Smo99962 (PACid_15420439)
-0.4 -1.03 -1.06 -0.43 -0.29 0.1 0.25 0.36 0.22 0.18 -0.19 -0.1 -0.71 -0.42 0.93 -0.74 -0.44 0.47 -0.13 0.54 0.27 1.4 -0.46 -0.35 1.19 -0.95 -0.22 -0.35 -0.49 -0.32 -0.65 -0.4

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.