Heatmap: Cluster_167 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo102403 (PACid_15405984)
0.42 0.35 0.08 0.01 0.24 0.03 -0.2 0.14 0.48 0.51 0.49 0.4 0.04 0.25 0.11 0.27 -0.61 -0.57 0.32 -4.8 -4.25 -2.3 -0.05 0.18 -4.05 0.7 0.14 0.39 -0.39 -0.43 0.18 0.5
Smo103361 (PACid_15408251)
0.87 0.89 0.85 0.79 0.64 0.49 0.84 0.58 0.67 0.67 0.66 0.78 -5.05 -2.5 -2.44 -3.96 0.21 -1.27 -0.89 -3.92 -1.94 -4.33 -0.77 -1.55 -1.2 -1.19 0.72 1.04 0.26 0.21 -0.59 -0.76
Smo105991 (PACid_15418871)
1.19 1.56 1.28 1.16 1.1 0.82 -0.02 -0.21 0.03 0.19 0.46 0.84 -8.06 -7.23 -6.22 -5.66 -1.03 -1.26 -0.92 -4.0 -2.52 -7.07 -1.45 -2.64 -0.5 0.43 1.04 1.52 -0.46 -0.5 -2.19 -3.03
Smo107618 (PACid_15422089)
1.03 1.07 1.05 0.85 0.55 0.32 0.13 0.42 0.24 0.32 0.59 0.82 -5.46 -3.42 -5.72 -4.04 0.33 -0.15 -1.23 -2.46 -2.04 -2.63 -0.63 -1.69 -0.72 -1.22 0.97 1.31 0.19 0.12 -0.43 -1.44
Smo109981 (PACid_15408073)
1.55 1.62 0.97 0.54 0.24 0.01 -0.25 -0.08 -0.08 0.01 0.25 1.0 -6.53 -2.15 -4.7 -2.66 0.34 -0.17 -0.35 -3.08 -0.98 -5.03 -0.02 -0.42 1.37 -1.66 -0.11 0.29 0.18 0.13 -1.81 -2.55
Smo115212 (PACid_15420529)
0.95 0.53 0.24 0.28 0.19 0.02 -0.55 0.19 -0.18 -0.07 0.36 0.35 -2.18 -0.88 -2.0 -1.27 -0.05 -0.89 0.15 -1.7 -4.9 - -0.95 -1.25 -6.19 2.16 1.1 1.46 -0.12 -0.18 -0.42 -0.69
Smo145611 (PACid_15422755)
1.47 1.33 0.97 0.64 0.22 -0.07 -0.02 0.28 0.29 0.52 0.71 1.19 -5.36 -4.63 -5.08 -3.76 0.07 -0.47 -0.9 -2.44 -1.44 -6.6 -0.77 -1.46 0.35 -0.52 0.46 0.75 0.22 0.11 -0.42 -1.64
Smo145812 (PACid_15402021)
1.57 1.33 0.54 0.19 0.24 0.38 0.15 0.36 0.17 0.31 0.52 0.94 -3.32 -2.21 -3.22 -2.41 0.01 0.05 -0.36 -6.78 -2.93 -8.19 -0.78 -1.5 -1.29 -0.93 1.27 1.51 0.11 0.17 -2.12 -2.33
Smo148692 (PACid_15409458)
0.75 0.75 0.71 0.5 0.44 0.37 0.31 0.3 0.36 0.4 0.53 0.58 -2.22 -1.84 -2.28 -1.7 0.23 -0.3 -0.49 -3.62 -2.65 -5.47 -0.6 -0.98 -0.72 0.16 1.1 1.41 -0.02 -0.03 -0.61 -0.68
Smo149815 (PACid_15413815)
1.32 1.28 1.01 0.63 0.33 0.29 0.38 0.3 0.19 0.31 0.56 1.02 -6.19 -3.04 -6.06 -3.96 -0.01 0.01 -1.25 -0.77 -0.21 -5.12 -1.01 -1.55 -1.19 -0.51 0.71 0.78 -0.26 -0.37 -0.31 -0.38
Smo155359 (PACid_15405448)
0.92 0.97 0.85 0.8 0.59 0.37 0.43 0.62 0.44 0.57 0.73 1.02 -2.3 -2.35 -3.26 -1.66 -0.16 -1.17 -0.89 -7.04 -3.32 -6.89 -0.74 -1.62 -1.5 -0.11 0.87 1.17 -0.06 -0.17 -0.28 -0.65
Smo163545 (PACid_15408282)
0.95 0.95 0.61 0.36 0.13 -0.01 0.13 0.19 0.14 0.24 0.4 0.38 -0.35 -0.09 -0.51 0.21 -0.26 -0.58 0.07 -2.91 -2.36 -2.06 -0.49 -0.61 -2.91 1.03 0.59 0.62 -0.11 -0.03 -1.09 -1.19
Smo165469 (PACid_15413546)
1.07 0.97 0.69 0.91 0.93 0.48 0.2 0.56 0.24 0.38 0.4 0.73 -1.99 -2.25 -5.39 -2.27 -0.74 -1.79 -0.7 -3.59 -1.9 -8.44 -1.32 -2.14 0.09 1.33 0.82 1.14 -0.66 -0.8 -0.59 -1.12
Smo167316 (PACid_15418454)
0.39 0.4 0.47 0.31 0.34 0.47 0.26 0.31 0.36 0.37 0.4 0.25 -1.48 -1.26 -0.93 -0.92 -0.09 -0.32 -0.09 -0.52 -0.63 -1.45 -0.29 -0.21 -0.49 0.2 0.52 0.82 -0.14 -0.13 -0.18 -0.15
Smo173134 (PACid_15412517)
1.35 1.05 0.6 0.34 0.18 -0.02 -0.21 0.08 0.13 0.15 0.34 0.79 -0.68 -1.14 -1.7 -0.52 -0.35 -0.33 -0.17 -3.37 -2.27 -2.14 -0.42 -0.41 -0.59 0.5 0.8 0.87 -0.14 -0.15 -0.38 -0.86
Smo174630 (PACid_15419220)
1.22 1.38 1.23 0.7 -0.03 -0.71 -0.65 -0.05 0.12 0.61 1.08 1.52 -3.96 -5.07 -3.75 -2.5 -0.15 -0.45 -0.61 -5.13 -2.5 -7.23 -1.9 -2.29 -2.04 1.47 0.42 0.84 0.26 0.04 -1.5 -1.86
Smo174988 (PACid_15421525)
0.83 0.69 0.6 0.23 0.28 0.24 0.2 0.23 0.31 0.36 0.45 0.53 -2.53 -1.07 -2.48 -1.28 0.16 0.16 -0.74 -0.57 -0.03 -2.17 -0.44 -0.74 -0.79 0.05 0.91 0.75 -0.15 -0.16 -0.26 -0.38
Smo177791 (PACid_15406521)
0.72 0.62 0.49 0.26 0.13 0.1 0.23 0.37 0.35 0.35 0.42 0.66 -2.12 -1.1 -2.62 -1.34 0.19 -0.21 0.27 -2.74 -0.27 -2.33 -0.33 -0.63 -0.54 -0.12 0.43 0.49 0.36 0.41 0.09 -0.01
Smo178079 (PACid_15403990)
0.47 0.35 0.08 0.19 0.08 0.03 0.08 -0.07 0.29 0.37 0.49 0.36 -0.04 0.11 -0.54 0.1 -0.26 -0.73 0.11 -2.22 -1.44 -1.75 -0.17 -0.05 -0.5 0.7 0.22 0.24 -0.26 -0.05 0.26 0.16
Smo182694 (PACid_15420697)
0.83 0.83 0.88 0.71 0.66 0.55 0.38 0.49 0.43 0.49 0.62 0.79 -3.81 -2.81 -6.92 -2.39 0.05 -0.15 -0.84 -2.68 -0.96 -5.54 -0.48 -0.92 -0.18 -0.03 0.62 0.82 -0.03 -0.14 -0.41 -0.81
Smo228435 (PACid_15407565)
0.84 0.86 0.66 0.41 0.31 0.23 0.17 0.42 0.24 0.29 0.32 0.64 -2.37 -1.15 -3.52 -1.71 0.36 0.09 -0.47 -3.8 -1.19 -4.19 -0.39 -0.8 0.74 -0.63 0.77 0.84 0.16 0.07 -0.14 -0.97
Smo233481 (PACid_15422655)
0.83 0.93 0.82 0.61 0.58 0.52 0.55 0.44 0.42 0.34 0.34 0.53 -3.05 -2.57 -2.99 -2.51 0.56 0.47 -0.81 -3.36 -1.46 -4.55 -0.35 -0.77 -0.23 -1.15 0.54 0.65 0.13 0.07 -0.28 -0.37
Smo268623 (PACid_15415708)
1.3 1.13 1.01 0.6 0.26 -0.11 -0.25 0.06 0.05 0.48 0.78 1.28 -5.4 -3.69 -7.81 -3.33 0.24 -0.04 -1.29 -4.73 -1.93 -6.71 -0.47 -1.14 -0.63 0.2 0.46 0.73 -0.06 -0.17 0.25 0.14
Smo269635 (PACid_15418620)
0.3 0.35 0.43 0.34 0.07 0.15 0.43 0.3 0.67 0.66 0.48 0.69 -1.09 -1.16 -1.18 -0.79 -0.7 -1.45 0.67 -3.25 -1.49 -0.98 -1.11 -1.44 -1.29 1.56 0.42 0.5 -0.14 -0.24 -0.01 -0.32
Smo270406 (PACid_15420206)
0.7 0.5 0.18 0.28 0.23 0.19 0.22 0.28 0.34 0.23 0.26 0.54 -0.78 -1.22 -1.85 -1.2 0.34 -0.13 -0.29 -2.61 -1.53 -3.37 -0.01 -0.22 0.09 0.11 0.76 0.88 0.25 0.28 -0.26 -0.46
Smo270508 (PACid_15420933)
0.9 0.49 0.3 0.13 0.23 0.31 0.48 0.61 0.52 0.49 0.58 0.4 -1.29 -0.87 -1.72 -1.52 0.04 0.11 -0.38 -2.58 -1.73 -4.68 -0.3 -0.77 -2.59 -0.02 1.1 1.05 0.1 0.1 -0.43 -0.35
Smo270825 (PACid_15423215)
1.27 1.16 1.01 0.79 0.54 0.36 0.28 0.23 0.37 0.51 0.71 1.17 -6.36 -2.95 -6.76 -3.54 0.67 0.32 -1.57 -5.3 -1.75 -6.81 -0.5 -1.38 -1.42 -1.1 0.26 0.65 0.15 0.02 -0.36 -0.89
Smo271018 (PACid_15420104)
0.6 0.56 0.57 0.48 0.42 0.58 0.63 0.52 0.6 0.52 0.4 0.67 -2.01 -2.44 -2.49 -2.07 0.22 0.01 -0.78 -2.98 -1.13 -2.82 -0.64 -1.0 -1.39 0.02 0.79 0.9 0.01 -0.09 0.03 0.02
Smo271457 (PACid_15423147)
0.9 0.86 0.83 0.81 0.72 0.97 0.7 0.73 0.64 0.53 0.62 0.86 -9.2 -6.83 -14.74 -6.12 0.59 -0.03 -2.41 -3.12 -1.17 -6.8 -1.01 -3.26 -0.37 -1.77 0.8 1.08 0.07 -0.14 -0.97 -1.82
Smo271459 (PACid_15423153)
1.08 0.82 0.3 0.21 0.16 -0.08 -0.03 0.16 0.13 0.24 0.29 0.83 -3.22 -1.14 -3.9 -3.03 -0.64 -1.78 -0.71 -2.76 0.3 -4.24 -1.64 -2.57 1.04 2.06 0.86 1.03 -0.45 -0.52 -1.71 -1.99
Smo272067 (PACid_15423021)
1.57 1.3 0.87 0.7 0.4 -0.01 -0.13 0.44 0.3 0.42 0.58 1.06 -1.65 -1.31 -4.87 -1.31 -0.67 -1.21 -0.59 -2.99 -1.59 -8.28 -1.3 -2.03 -0.37 1.2 0.48 0.79 -0.55 -0.59 -1.0 -1.49
Smo403678 (PACid_15408807)
0.89 1.08 0.77 0.87 0.57 0.32 0.42 -0.09 0.29 0.73 0.9 1.11 -1.29 -0.29 -0.39 -1.47 -2.35 -6.48 -0.62 - -1.2 -5.62 -1.2 -1.28 -0.78 2.08 0.52 0.3 -1.81 -2.8 -3.08 -4.23
Smo426174 (PACid_15405818)
1.03 0.99 0.72 0.82 0.48 0.49 0.54 0.49 0.58 0.74 0.67 0.89 -4.86 -2.59 -1.9 -3.71 0.03 -0.6 -1.13 -3.35 -4.38 - -0.88 -1.8 -0.55 -0.9 1.05 1.23 -0.06 -0.12 -0.76 -0.89
Smo428906 (PACid_15417706)
1.36 0.99 0.91 0.66 0.33 -0.05 -0.15 -0.02 0.07 0.35 0.62 0.8 -1.07 -1.28 -1.44 -0.83 0.26 -0.55 -0.49 -3.79 -2.29 -4.49 -0.08 0.02 -1.37 0.34 -0.31 0.23 0.35 0.33 -0.38 -0.57
Smo439358 (PACid_15423243)
1.42 0.62 0.44 0.03 0.26 0.06 -0.31 0.12 0.29 0.64 0.72 0.72 -3.81 -0.76 -4.29 -2.11 0.7 0.35 -0.74 -4.64 -0.88 -6.87 -1.46 -1.33 -1.78 0.58 0.45 0.74 0.53 0.6 -0.1 -0.49
Smo442018 (PACid_15407554)
1.99 1.55 0.76 0.06 0.11 -0.13 -0.95 -0.48 -0.57 -0.42 0.13 1.0 -0.63 -1.35 -2.28 0.21 -0.7 -0.64 -1.26 -2.31 -2.38 -1.21 -0.26 -0.13 -0.02 -0.79 1.31 0.99 -0.43 -0.35 -2.18 -2.46
Smo442478 (PACid_15410929)
1.39 0.85 0.54 0.29 0.0 -0.35 -0.39 0.19 0.33 0.56 0.73 0.82 -0.13 -1.23 -2.37 -0.05 -0.6 -1.44 -0.33 -2.88 -2.27 -2.74 -1.27 -1.39 -1.28 1.2 0.84 1.1 -0.12 -0.13 -1.13 -1.02
Smo442479 (PACid_15410931)
1.36 0.74 0.25 0.1 -0.19 -0.14 -0.04 0.13 0.1 0.2 0.35 0.91 -0.8 -1.01 -0.31 -0.28 -0.54 -1.31 0.29 -1.35 -0.3 -1.01 -0.65 -0.6 -0.83 0.93 0.3 0.38 0.01 -0.01 -0.73 -0.6
Smo442777 (PACid_15413233)
1.27 0.93 0.74 0.5 0.49 0.1 -0.05 0.27 0.47 0.45 0.69 1.01 -1.93 -1.73 -1.41 -0.91 0.1 -0.59 -0.36 -3.15 -3.66 -4.48 -0.35 -0.61 -1.75 0.73 0.25 0.52 0.23 0.22 -0.77 -1.31
Smo444108 (PACid_15414338)
1.31 1.46 1.28 1.01 0.5 0.12 0.21 0.41 0.5 0.79 0.95 1.33 -6.1 -8.22 -8.67 -4.49 -0.83 -0.8 -0.8 -2.45 -2.52 -3.34 -1.64 -1.92 -3.55 0.5 0.01 0.37 0.03 0.05 -0.89 -0.9
Smo445346 (PACid_15418823)
0.94 0.79 0.45 0.52 0.05 0.1 -0.01 -0.01 0.58 0.34 0.52 0.74 -0.18 -0.29 -1.17 0.07 -0.25 -1.12 0.04 -3.77 -3.83 -4.28 0.08 0.2 -1.56 1.17 -0.03 -0.24 -0.22 -0.17 -0.32 -0.51
Smo448423 (PACid_15405926)
1.14 1.17 0.93 0.59 0.06 -0.37 -0.42 -0.23 0.0 0.21 0.49 1.03 -3.94 -1.85 -4.43 -2.53 0.07 -0.57 -0.41 -1.85 -0.66 -5.33 -0.66 -0.94 0.63 0.86 0.47 0.95 -0.1 -0.09 -0.22 -0.77
Smo448428 (PACid_15405933)
0.59 0.67 0.34 0.48 0.31 0.11 0.05 0.35 0.11 0.1 0.19 0.38 -0.77 -1.01 -1.74 -0.23 -0.68 -0.71 -0.33 -2.46 -1.01 -4.05 -0.15 -0.09 -0.08 1.4 0.88 0.95 -0.49 -0.47 -0.44 -0.64
Smo50862 (PACid_15409203)
1.15 1.14 0.69 0.54 0.4 0.3 0.25 0.44 0.31 0.45 0.48 0.78 -1.31 -1.6 -2.01 -0.91 -0.5 -0.89 -0.2 - -3.81 -1.84 -0.64 -0.86 -1.65 0.74 0.64 0.84 -0.04 -0.11 -0.61 -0.7
Smo75562 (PACid_15413657)
0.74 0.75 0.25 0.5 0.33 0.06 0.27 0.29 0.51 0.4 0.54 0.71 -0.12 -1.46 -1.64 -1.13 0.37 -0.05 -0.65 -2.1 -0.35 -2.72 -0.68 -1.37 0.39 -0.58 0.23 0.33 0.17 0.18 -0.27 -0.22
Smo77854 (PACid_15421596)
0.72 1.0 0.44 0.13 0.15 -0.07 0.35 0.57 0.61 0.54 0.33 0.64 -4.68 -2.64 -1.07 -2.1 -0.36 -0.31 -0.05 -5.53 -0.72 -4.68 -0.69 -0.95 -0.7 1.16 0.84 1.27 -0.05 0.02 -0.62 -1.51
Smo79954 (PACid_15405952)
0.66 1.02 0.9 0.95 0.72 0.51 0.44 0.62 0.52 0.48 0.5 0.6 -3.38 -1.39 -2.44 -2.23 0.04 -0.62 -0.97 -3.43 -3.05 -3.32 -0.84 -1.56 -1.68 -0.07 1.25 1.36 -0.25 -0.3 -1.15 -1.73
Smo82367 (PACid_15410537)
1.08 0.94 0.64 0.48 0.17 0.07 0.05 0.43 0.23 0.36 0.45 0.93 -1.33 -1.43 -1.49 -0.99 -0.18 -0.49 -0.19 -2.22 -2.11 -3.08 -0.48 -0.4 -0.01 0.37 0.69 0.76 -0.03 -0.18 -0.72 -0.95
Smo88561 (PACid_15407124)
1.0 0.76 0.25 0.55 0.4 0.28 0.13 0.36 0.52 0.54 0.58 0.76 -2.07 -1.31 -2.28 -1.15 -0.39 -1.43 -0.16 - -3.89 -7.51 -1.12 -1.45 -1.81 1.89 0.88 0.89 -0.4 -0.42 -0.65 -0.77
Smo93539 (PACid_15421977)
0.92 1.04 0.51 0.68 0.47 0.62 0.62 0.38 0.71 0.46 0.4 0.63 -4.36 -1.1 -3.06 -1.3 0.05 0.29 -0.75 -1.29 -1.43 -5.11 -0.15 -0.45 0.07 -1.48 0.58 0.64 -0.26 -0.29 -1.24 -1.04
Smo96266 (PACid_15406260)
1.04 1.01 0.7 0.52 0.39 0.22 0.17 0.3 0.17 0.21 0.32 0.64 -1.73 -1.3 -1.34 -1.26 -0.13 -0.6 -0.36 -1.64 -0.69 -1.22 -0.42 -0.61 0.67 0.05 0.5 0.73 -0.26 -0.27 -0.9 -1.28
Smo96850 (PACid_15410919)
0.99 0.93 0.75 0.58 0.43 0.02 0.08 0.34 0.51 0.54 0.54 0.85 -1.47 -2.16 -1.05 -1.15 0.21 -0.36 -0.93 -2.36 -0.15 -2.54 -0.31 -0.66 -0.54 -0.15 0.36 0.24 0.05 0.01 -0.4 -0.82
Smo98499 (PACid_15413847)
0.45 0.55 0.48 0.51 0.23 0.14 0.13 0.07 0.21 0.34 0.38 0.58 -0.85 -0.78 -0.93 -0.5 -0.7 -1.97 0.34 -2.57 -0.51 -5.59 -0.6 -0.71 -0.08 1.54 0.66 0.69 -0.43 -0.3 -0.55 -0.44
Smo98780 (PACid_15416070)
0.79 0.41 0.3 0.21 0.34 0.35 0.26 0.4 0.47 0.49 0.53 0.67 -2.09 -1.65 -2.68 -1.33 -0.07 0.54 -0.13 -2.64 -0.08 -2.87 -0.57 -0.86 0.11 0.13 0.43 0.69 0.13 0.11 -0.35 -0.6

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.