Heatmap: Cluster_170 (HCCA cluster)

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo110107 (PACid_15405009)
7.37 6.74 6.55 7.82 6.65 12.79 10.29 7.73 4.62 8.77 6.19 6.16 7.18 3.48 14.26 7.68 5.08 5.08 6.81 0.4 0.11 0.87 5.3 6.06 2.89 8.12 6.3 6.42 5.11 5.96 5.15 5.14
Smo125776 (PACid_15409354)
13.42 16.19 16.23 19.79 17.54 19.41 21.2 19.55 19.12 17.98 17.37 15.95 8.18 9.16 16.53 7.72 12.88 9.26 10.87 19.6 6.56 5.52 10.08 8.75 7.85 12.34 14.95 17.67 12.11 12.75 7.18 7.18
Smo126642 (PACid_15411474)
13.56 19.32 21.39 23.01 23.0 26.24 29.24 22.64 24.03 21.99 20.11 15.73 9.56 70.47 57.84 35.74 69.87 41.22 8.55 0.0 10.95 0.49 16.83 26.32 9.31 8.98 8.22 10.82 35.18 36.24 17.18 13.04
Smo13182 (PACid_15406133)
7.72 8.92 9.82 8.83 6.71 9.69 8.74 7.57 7.59 7.07 6.75 5.33 4.78 3.37 7.54 5.43 7.57 10.96 6.19 0.0 0.33 1.62 7.6 5.79 1.43 4.67 8.88 9.12 5.99 6.73 4.01 4.37
Smo143797 (PACid_15417915)
47.4 50.04 47.52 49.77 48.15 53.21 51.09 37.9 42.7 43.04 47.18 40.79 21.74 36.01 99.24 28.34 60.7 38.3 24.87 48.74 39.24 25.21 26.99 27.62 34.63 17.74 22.2 26.22 37.72 46.16 27.17 18.35
Smo15078 (PACid_15411299)
25.45 28.26 30.87 33.1 32.23 33.52 40.99 29.88 36.21 32.15 33.64 28.58 9.9 11.69 64.24 17.61 41.59 31.69 13.39 0.54 2.37 0.0 20.37 20.65 1.47 6.1 8.19 7.43 22.55 24.44 32.49 27.49
Smo161430 (PACid_15401681)
64.65 82.47 90.13 85.94 86.06 80.5 98.73 99.14 105.89 111.3 101.37 95.34 74.53 55.9 106.39 58.53 49.47 33.32 46.87 42.94 53.16 25.44 58.47 56.34 42.09 101.53 42.57 46.42 60.35 64.02 50.5 50.73
Smo234188 (PACid_15423242)
24.65 19.59 25.84 24.57 28.09 25.53 35.41 29.65 49.53 48.78 44.03 48.17 7.28 3.81 90.34 11.59 36.99 21.76 14.87 24.92 18.4 101.79 18.32 9.11 4.02 4.5 3.2 5.46 37.48 34.24 29.83 17.52
Smo267868 (PACid_15414436)
21.3 21.76 25.43 25.43 23.68 31.53 48.98 30.26 48.78 38.22 33.76 28.09 16.02 10.6 78.28 13.97 57.93 29.67 40.0 25.49 9.36 61.2 6.44 9.98 2.79 7.86 4.94 9.36 35.94 41.83 13.13 8.51
Smo2945 (PACid_15413917)
17.63 25.26 31.13 35.59 35.58 26.93 39.51 36.85 40.99 39.45 31.97 31.31 8.07 17.75 39.39 16.68 24.45 21.83 17.33 0.13 0.0 0.0 23.81 18.4 0.6 25.78 7.87 9.2 23.44 23.54 27.6 29.18
Smo33809 (PACid_15403364)
43.7 37.0 42.7 38.85 40.8 45.05 43.84 35.38 39.46 40.18 44.7 40.2 19.47 19.4 52.4 21.96 41.04 26.35 25.24 0.21 0.44 3.14 32.77 27.51 1.68 11.88 22.42 28.78 34.48 43.69 27.36 22.59
Smo38281 (PACid_15413733)
258.28 252.01 253.53 283.16 244.25 314.2 323.31 211.77 347.99 310.39 280.21 285.6 117.38 220.51 466.99 111.39 387.53 477.85 80.61 35.89 7.62 81.8 159.68 153.03 3.12 12.72 22.8 15.02 295.03 295.76 275.59 310.57
Smo403928 (PACid_15411128)
9.35 10.63 11.24 12.64 9.7 11.91 10.24 14.25 10.79 10.8 12.97 11.76 4.31 8.38 8.68 4.68 3.55 1.63 6.29 13.85 2.73 3.39 4.88 6.01 6.84 7.23 7.04 6.52 3.59 3.3 3.93 3.16
Smo405136 (PACid_15410837)
34.73 49.06 55.82 58.08 65.18 72.42 63.85 43.32 45.85 40.46 42.84 36.26 24.69 26.98 98.57 28.82 95.69 67.99 10.08 11.78 6.07 109.01 35.17 45.01 8.64 6.56 10.62 12.5 50.09 61.63 37.86 26.61
Smo405848 (PACid_15416198)
7.3 9.61 13.35 13.7 16.16 15.49 16.43 13.42 18.95 14.49 14.89 9.66 0.82 3.58 16.33 1.95 7.72 8.53 5.26 9.71 0.73 3.76 4.49 3.87 1.13 4.37 3.36 4.91 5.65 7.09 5.57 8.2
Smo405992 (PACid_15417071)
1.1 0.89 0.73 0.67 0.89 1.09 1.05 1.17 1.23 1.19 1.06 1.05 0.15 0.15 3.07 0.42 1.28 1.34 1.12 1.26 0.15 2.81 0.55 0.14 0.23 0.47 1.29 1.19 0.98 1.17 0.43 0.46
Smo406756 (PACid_15418375)
7.08 8.06 8.43 6.91 7.24 7.65 8.59 5.83 7.78 7.67 9.07 7.57 2.46 4.77 12.42 6.64 6.65 7.37 4.83 0.92 0.71 5.99 2.14 2.34 0.56 2.51 3.21 2.99 5.73 6.8 3.38 2.89
Smo406781 (PACid_15418419)
2.66 1.85 1.75 2.27 2.22 2.27 2.69 1.61 2.99 2.68 2.52 2.07 0.54 0.57 6.48 0.77 2.25 1.92 4.9 0.2 0.17 4.46 0.26 0.4 0.08 0.81 0.98 0.78 1.21 1.65 1.54 1.57
Smo407674 (PACid_15420563)
60.65 106.63 123.14 123.38 123.8 148.12 78.88 55.74 67.99 51.58 50.45 46.21 52.48 9.5 46.19 27.94 138.04 201.99 12.58 37.86 19.77 106.07 39.64 16.28 10.47 9.82 23.26 35.02 65.55 87.01 57.17 41.35
Smo409213 (PACid_15423097)
26.0 26.8 26.77 30.47 28.09 26.71 27.73 26.65 24.84 28.34 25.67 27.95 24.45 23.72 44.43 32.54 22.53 18.87 30.91 6.26 13.41 23.48 17.61 21.19 17.76 26.61 21.88 25.08 22.3 22.04 24.01 29.78
Smo410628 (PACid_15407061)
76.88 78.78 100.58 111.86 85.33 103.52 101.76 88.08 79.72 118.33 115.94 94.25 129.31 170.33 149.97 122.73 138.54 266.24 46.95 19.84 4.37 8.82 246.62 149.12 7.51 12.23 18.34 18.36 110.28 113.18 78.29 68.96
Smo413732 (PACid_15416716)
6.91 7.03 5.43 7.33 5.79 8.65 7.83 8.14 7.62 7.84 8.55 6.39 3.35 4.2 9.21 2.68 5.62 2.18 3.57 0.0 0.0 1.06 3.83 2.8 1.06 2.42 1.93 2.48 4.12 3.9 6.87 6.12
Smo414690 (PACid_15419084)
8.2 9.5 10.08 10.93 10.08 13.53 13.05 8.23 9.95 8.66 7.81 5.89 6.59 23.29 17.63 19.2 15.94 12.4 4.27 0.33 0.12 1.69 7.24 6.66 0.73 1.99 2.77 4.12 9.02 11.44 12.02 6.61
Smo416379 (PACid_15422462)
31.96 42.21 54.0 42.76 37.21 37.75 37.48 22.07 24.38 25.68 26.9 23.57 36.6 45.67 35.11 39.17 35.72 54.08 19.67 0.68 5.75 0.15 30.33 36.77 9.08 10.25 19.36 22.64 22.62 21.14 13.08 14.26
Smo419187 (PACid_15407354)
37.44 40.33 35.86 34.49 31.88 37.56 42.84 26.15 42.58 38.6 35.39 39.62 16.3 21.2 37.76 14.82 48.11 36.16 11.59 10.93 13.2 23.59 18.39 11.18 3.83 3.64 6.36 9.25 34.4 35.64 24.81 22.25
Smo419447 (PACid_15409662)
0.89 1.53 2.22 2.06 2.11 1.9 2.03 1.87 1.89 2.17 1.74 1.27 0.52 0.49 1.59 0.43 1.09 0.82 1.96 0.0 0.0 0.0 0.99 0.53 0.0 0.45 0.56 0.85 0.41 0.69 0.6 0.44
Smo420092 (PACid_15409940)
18.68 23.49 34.05 30.69 34.39 31.22 36.94 30.23 33.47 33.47 30.79 22.82 6.23 8.85 27.64 10.43 32.58 38.03 8.57 21.41 6.05 36.09 21.43 13.33 2.54 12.33 8.5 13.24 21.09 25.89 20.56 19.1
Smo424757 (PACid_15404462)
56.4 67.54 77.57 70.44 66.48 64.6 61.28 35.45 51.13 53.14 53.86 52.98 12.37 36.35 113.86 7.83 128.99 147.51 10.0 0.42 1.85 1.6 5.68 3.47 4.46 6.99 12.15 17.86 66.62 68.45 43.87 35.16
Smo429380 (PACid_15416221)
11.85 13.5 10.93 12.68 12.6 12.53 14.41 13.66 13.23 14.97 12.6 13.84 0.96 9.72 8.46 2.27 7.19 9.13 12.05 11.45 3.04 3.1 8.24 5.01 11.46 12.49 16.94 17.75 6.55 6.48 4.35 4.94
Smo430475 (PACid_15420154)
60.13 71.17 88.49 87.27 76.74 81.5 72.63 56.98 63.19 55.2 55.38 49.43 31.02 78.42 77.92 79.54 80.08 128.58 25.96 1.15 0.0 0.74 59.67 59.38 0.0 16.78 20.06 20.73 44.91 53.08 36.82 27.86
Smo44115 (PACid_15408131)
18.16 17.2 14.16 12.43 9.87 11.37 16.57 17.49 23.31 21.58 23.06 20.49 6.9 5.3 28.8 10.36 10.9 8.36 11.1 0.74 0.7 1.58 8.97 10.38 0.08 11.24 4.49 4.26 12.39 13.9 12.5 13.56
Smo443341 (PACid_15412991)
145.29 211.87 249.43 229.64 248.66 251.81 220.16 149.99 167.61 170.5 175.01 151.68 222.83 496.58 71.58 166.5 305.0 233.66 34.54 17.21 5.76 55.07 243.73 162.59 19.31 52.3 46.37 71.35 180.74 227.66 111.29 98.27
Smo443554 (PACid_15414632)
283.22 369.7 449.13 395.62 434.73 476.97 389.34 366.33 349.94 304.5 374.44 236.11 498.7 475.72 305.55 601.86 327.04 461.08 266.22 138.11 72.21 163.21 542.9 556.39 43.33 124.38 179.52 263.43 283.54 294.09 196.17 162.69
Smo444337 (PACid_15415912)
13.38 15.46 15.18 12.54 14.34 16.77 20.08 12.23 18.64 17.61 17.76 15.04 13.55 20.76 20.13 11.99 25.36 22.54 1.83 0.17 0.0 0.35 5.61 3.1 0.12 1.86 2.37 3.15 13.22 14.34 6.81 5.29
Smo445643 (PACid_15421034)
361.78 465.28 487.46 405.71 420.27 401.02 495.19 337.74 383.3 383.41 428.4 320.06 403.8 558.27 621.43 449.32 761.63 756.51 130.82 26.5 17.77 34.97 874.26 851.87 5.18 67.28 89.68 144.27 458.08 516.56 385.46 295.47
Smo48156 (PACid_15420012)
26.75 26.02 24.64 21.35 31.14 31.47 21.68 25.23 22.68 17.9 18.85 18.36 22.35 15.79 42.12 25.21 21.04 25.28 26.23 1.26 6.48 17.46 17.33 16.71 1.68 10.78 15.27 15.19 19.13 20.09 20.06 19.83
Smo52561 (PACid_15412772)
3.8 3.9 4.55 3.95 3.79 4.34 4.01 3.63 3.36 4.0 3.14 3.23 4.16 2.68 7.69 3.99 2.47 3.08 4.26 0.04 0.0 0.95 3.56 3.64 1.45 3.2 3.03 2.89 2.55 3.02 1.71 2.54
Smo54741 (PACid_15420092)
30.01 40.71 42.97 38.36 40.98 43.55 42.94 36.06 47.96 43.5 39.2 37.49 17.46 36.43 53.02 20.33 38.27 40.27 16.72 7.93 3.22 7.58 24.93 17.29 6.98 15.45 33.18 36.56 33.5 36.99 15.74 16.77
Smo61378 (PACid_15415588)
11.94 11.18 11.16 10.53 10.15 11.7 13.48 7.66 9.99 10.08 11.28 10.05 5.45 3.81 18.83 6.66 9.89 8.25 4.38 11.73 3.51 11.2 4.58 4.31 3.15 2.88 5.05 5.59 6.57 8.12 3.74 3.51
Smo64465 (PACid_15402644)
5.86 7.12 4.84 5.6 5.28 6.35 6.71 6.35 6.05 6.57 5.81 4.21 1.9 2.63 8.23 3.08 5.03 2.49 4.19 1.04 0.0 0.75 2.87 2.28 0.76 3.18 6.51 5.42 4.16 3.48 3.39 4.37
Smo67913 (PACid_15415251)
25.01 28.35 26.61 25.33 27.16 28.11 25.86 23.53 24.61 27.45 25.75 20.99 14.98 38.87 69.83 22.78 36.83 50.95 28.23 1.0 5.4 2.27 40.84 33.61 2.27 6.95 10.28 10.9 26.49 31.03 23.67 23.76
Smo71657 (PACid_15402571)
21.8 33.69 31.63 28.43 24.86 28.87 26.51 22.95 24.09 16.71 16.95 20.33 30.1 20.22 39.0 29.11 28.26 49.86 27.62 5.0 0.0 0.0 31.85 25.02 0.91 19.52 36.78 39.39 24.27 19.43 24.06 24.76
Smo74030 (PACid_15406723)
19.2 21.45 26.01 25.22 22.82 21.95 24.64 17.77 25.39 23.17 21.38 18.59 4.78 11.14 29.99 10.1 26.84 7.18 3.84 0.72 0.0 0.0 8.12 5.96 0.31 4.41 4.94 7.31 17.87 19.83 13.68 7.24
Smo74114 (PACid_15407384)
30.83 28.86 30.58 22.88 28.34 24.56 27.37 17.96 30.11 25.67 31.28 24.48 4.5 1.16 61.36 5.54 40.72 21.01 6.36 42.72 10.98 43.56 0.94 0.34 4.81 5.06 7.89 11.44 23.68 27.89 11.91 5.86
Smo75450 (PACid_15412815)
83.1 123.27 141.83 130.59 136.28 127.16 103.93 66.8 79.72 77.14 71.36 66.72 190.75 194.18 31.21 156.65 154.46 164.19 56.02 5.07 21.4 11.29 182.59 130.22 25.52 23.99 43.72 48.79 102.52 119.24 94.51 98.59
Smo77069 (PACid_15415675)
40.9 40.6 40.46 41.19 45.98 44.25 41.67 42.25 41.72 48.79 41.02 41.89 27.19 34.8 41.73 27.99 21.57 13.89 27.79 31.11 35.68 34.22 23.56 20.81 48.07 25.66 27.56 27.05 22.74 25.8 14.54 14.87
Smo78419 (PACid_15421371)
14.17 17.3 18.24 22.14 23.86 23.49 20.94 19.03 21.19 19.81 18.1 15.16 16.78 14.31 28.39 18.85 15.87 11.72 22.22 7.57 6.33 9.39 16.7 16.88 11.71 8.9 12.2 11.53 13.59 15.24 9.83 9.78
Smo78641 (PACid_15422958)
0.71 0.9 1.3 0.87 1.37 1.27 0.97 0.97 0.88 0.48 0.65 0.7 0.2 0.59 2.18 0.26 0.84 1.43 2.27 0.71 0.48 2.48 0.49 0.25 0.46 0.45 1.03 1.14 0.61 0.63 0.43 0.27
Smo80116 (PACid_15402938)
17.06 22.52 22.06 20.34 21.87 20.99 23.44 16.46 21.94 23.64 23.47 20.93 19.62 25.06 16.89 15.01 23.86 23.81 8.04 6.39 8.25 15.74 16.47 10.54 2.81 6.55 5.75 7.1 15.34 18.1 12.03 12.16
Smo81473 (PACid_15408279)
17.27 17.22 17.68 15.65 15.79 16.23 18.6 16.59 23.69 21.53 22.38 19.79 7.28 11.32 23.87 10.83 21.46 10.64 5.52 2.07 3.34 2.64 6.05 3.76 1.31 4.25 3.96 5.03 16.37 18.65 7.79 6.33
Smo83012 (PACid_15411085)
22.53 31.83 31.12 38.61 37.1 43.14 32.22 28.39 33.78 28.33 25.25 21.26 5.2 9.78 37.39 13.1 38.23 23.23 10.84 35.28 6.31 29.06 12.56 4.39 5.02 17.33 23.84 30.03 22.84 28.58 20.1 12.82
Smo85451 (PACid_15419991)
33.23 39.5 44.27 45.22 43.24 41.66 44.27 37.2 43.21 39.07 37.57 34.82 16.84 32.79 53.99 19.38 54.96 39.17 21.51 20.95 7.14 25.16 29.87 21.64 3.35 22.16 26.27 36.75 42.19 50.0 31.57 25.25
Smo85778 (PACid_15422243)
58.64 81.28 79.47 89.84 86.98 88.46 72.59 54.74 60.82 61.2 58.48 51.39 39.59 133.94 28.31 41.16 84.91 98.46 46.66 0.05 3.03 0.0 83.02 53.26 33.77 24.55 40.93 52.17 48.52 53.99 40.04 35.32
Smo86022 (PACid_15419800)
22.74 23.1 21.66 21.17 21.57 24.21 22.21 24.17 27.68 27.08 32.45 24.83 3.18 3.32 37.62 9.85 34.23 25.31 4.83 6.43 3.07 21.99 18.18 20.13 1.01 8.6 10.66 11.34 20.73 24.1 20.32 16.4
Smo89194 (PACid_15407072)
11.78 15.49 17.59 15.98 14.15 14.75 17.21 15.23 19.26 20.69 19.93 18.11 6.26 6.11 22.77 7.68 11.76 8.44 14.52 1.57 0.05 0.0 5.85 7.7 0.69 7.65 5.29 4.57 9.6 10.26 10.63 9.2
Smo8958 (PACid_15409007)
153.07 161.43 153.57 146.22 135.14 162.71 140.54 113.89 122.04 114.73 111.35 112.45 118.67 99.67 187.85 118.09 126.79 188.0 145.32 0.45 0.55 0.0 91.68 99.1 0.91 79.66 109.5 114.48 122.81 124.69 121.85 134.1
Smo89766 (PACid_15411742)
31.87 38.84 39.47 41.69 52.07 54.09 50.8 49.05 40.6 38.73 33.11 32.61 33.81 24.36 72.82 43.16 29.2 37.6 57.16 13.69 8.73 24.36 41.89 47.38 5.33 28.29 23.96 26.35 34.45 35.04 26.52 29.92
Smo91996 (PACid_15419415)
62.89 56.63 56.56 55.51 57.97 53.0 57.83 49.33 60.49 62.04 57.25 59.34 27.14 30.82 78.0 32.14 48.28 35.71 35.37 1.44 6.24 4.7 31.4 33.87 5.41 36.2 35.75 41.41 42.64 44.17 38.48 41.82
Smo92818 (PACid_15421295)
60.28 50.9 53.7 46.54 41.77 46.28 53.56 62.25 77.65 82.66 77.88 64.07 17.33 15.02 72.7 23.09 50.29 40.51 23.27 24.4 25.69 62.81 16.13 13.23 3.68 37.96 18.35 15.59 47.33 45.81 32.51 34.08
Smo96441 (PACid_15407667)
84.29 118.16 135.82 221.59 318.34 503.09 367.01 253.53 149.09 123.23 91.36 73.54 97.22 31.75 28.78 140.11 206.95 518.38 147.39 128.18 302.88 299.14 260.06 190.03 93.69 72.99 108.88 96.03 127.26 121.91 81.31 88.28
Smo97331 (PACid_15409914)
29.55 41.0 44.71 33.12 39.63 39.54 36.0 24.04 34.55 30.85 36.53 30.59 36.23 53.34 60.18 25.23 70.35 54.4 13.9 0.04 4.43 2.59 40.16 11.35 3.59 8.54 17.88 21.85 45.17 54.45 26.68 23.46
Smo98457 (PACid_15413735)
4.76 9.41 8.55 7.72 6.32 6.53 7.27 4.02 6.05 6.13 6.44 6.46 1.86 21.27 9.93 15.9 11.64 7.7 2.47 1.37 2.19 6.35 4.4 3.03 2.44 1.95 2.99 2.63 8.4 7.22 2.01 2.06
Smo98891 (PACid_15416813)
29.58 51.3 50.9 38.02 37.74 35.3 24.6 15.72 14.69 19.5 20.81 19.83 10.46 60.14 13.89 18.06 72.37 44.25 15.04 1.55 0.69 1.16 48.46 18.86 4.71 15.74 14.95 22.25 30.54 32.73 9.69 7.1
Smo99375 (PACid_15415907)
45.84 47.03 50.29 51.72 52.06 48.02 59.59 36.25 54.24 50.24 49.13 47.87 21.86 12.67 87.03 23.67 73.12 57.9 19.18 67.7 41.97 30.82 17.2 12.18 42.04 24.63 20.72 26.12 53.89 49.44 27.93 22.1

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)