Heatmap: Cluster_334 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo405478 (PACid_15413241)
-0.16 0.89 0.97 0.43 1.33 0.36 0.24 -0.3 1.17 0.14 0.93 0.76 -1.2 -1.5 -1.45 -1.21 -1.11 -1.35 -1.85 - - -1.85 -0.56 -0.48 0.6 0.51 0.7 0.71 -0.31 -0.13 -0.87 -1.61
Smo415641 (PACid_15421733)
0.06 0.21 -0.39 0.61 0.64 0.61 0.57 0.06 1.01 -0.11 0.46 0.39 -3.06 -1.28 -0.91 -1.73 -0.28 -4.3 0.16 -1.26 -1.75 -0.81 -0.19 -0.79 1.43 -0.03 0.58 0.78 -0.3 0.03 -0.4 -0.54

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.