Heatmap: Cluster_203 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Aerial tissue - Light - ZT1	Aerial tissue - Light - ZT3	Aerial tissue - Light - ZT5	Aerial tissue - Light - ZT7	Aerial tissue - Light - ZT9	Aerial tissue - Light - ZT11	Aerial tissue - Dark - ZT1	Aerial tissue - Dark - ZT3	Aerial tissue - Dark - ZT5	Aerial tissue - Dark - ZT7	Aerial tissue - Dark - ZT9	Aerial tissue - Dark - ZT11	Roots	Root elongation and differentiation zone	Root meristematic zone	Aerial roots and rhizophores	Shoot tips	Microphyll	Strobili	Shoot apical meristem - AC	Shoot apical meristem - Core	Shoot apical meristem - P1	Stem - Top	Stem - Bottom	Whole plant	Aerial tissue - Stress - Dark	Aerial tissue - Stress - High light	Aerial tissue - Stress - Cont	Aerial tissue - Stress - 37C 1h	Aerial tissue - Stress - 37C 3h	Aerial tissue - Stress - 4C 1h	Aerial tissue - Stress - 4C 3h
Smo110629 (PACid_15408919)	-0.25	-0.05	0.04	0.37	0.47	0.6	0.62	0.76	0.54	0.18	-0.17	-0.04	-1.13	-0.98	-0.63	-0.79	0.18	-0.59	-0.28	-1.47	-0.74	-0.8	-0.22	-0.3	0.75	-0.39	0.53	0.8	0.05	0.09	-0.14	-0.63
Smo11493 (PACid_15402595)	0.1	0.66	0.63	0.73	0.61	0.62	0.8	0.5	0.42	0.46	0.48	0.49	-0.97	-0.84	-1.39	-0.86	0.37	-0.07	-0.41	-1.46	-0.66	-2.35	-0.33	-0.89	-0.43	-0.91	-0.59	-0.5	0.14	0.11	-0.06	0.12
Smo117112 (PACid_15403168)	0.48	0.32	0.37	0.58	0.55	0.67	0.73	0.89	0.74	0.62	0.45	0.51	-3.48	-2.51	-3.73	-2.63	0.34	-0.29	-0.84	-1.96	-0.29	-2.25	-0.6	-1.27	-0.01	0.12	0.28	0.59	0.23	0.07	-0.2	-0.74
Smo126991 (PACid_15413963)	0.01	0.08	0.48	0.5	0.49	0.66	0.74	0.49	0.38	0.13	0.01	-0.06	-1.21	-1.03	-0.49	-1.01	0.38	-0.14	-0.53	-0.87	-0.49	-0.87	-0.36	-0.45	0.44	-0.26	0.42	0.6	0.02	-0.05	-0.35	-0.9
Smo130316 (PACid_15420984)	0.33	0.42	0.56	0.6	0.46	0.67	0.81	0.79	0.68	0.63	0.62	0.58	-7.35	-5.43	-6.82	-5.19	0.68	0.07	-1.05	-1.68	-0.02	-3.5	-0.54	-1.65	-0.09	-1.45	0.71	0.92	0.3	0.27	-0.94	-1.35
Smo131328 (PACid_15401633)	0.42	0.14	0.22	0.17	0.29	0.32	0.46	0.46	0.6	0.49	0.54	0.46	-2.03	-0.86	-1.08	-1.69	0.5	-0.05	-0.64	-0.85	-0.53	-1.16	-0.47	-0.73	0.08	-0.13	0.37	0.5	0.16	0.15	-0.11	-0.22
Smo134640 (PACid_15412790)	0.15	-0.17	-0.18	0.67	0.62	0.8	0.78	1.0	1.01	0.57	0.75	0.57	-3.52	-2.59	-1.1	-3.42	0.09	-4.5	-1.48	-	0.13	-2.09	-1.28	-2.3	-0.03	-0.93	1.06	1.28	0.13	0.18	-0.18	-0.98
Smo141857 (PACid_15412778)	0.44	0.3	0.41	0.48	0.48	0.55	0.44	0.71	0.53	0.33	0.34	0.57	-1.48	-1.24	-0.86	-0.76	0.11	-0.24	-0.38	-1.22	-1.38	-1.99	-0.34	-0.49	-0.69	0.17	0.61	0.59	0.14	0.17	-0.61	-0.93
Smo143134 (PACid_15413272)	0.26	0.33	0.53	0.59	0.6	0.62	0.86	0.6	0.51	0.38	0.28	0.34	-3.07	-2.35	-2.09	-2.42	0.53	-0.06	-1.01	-3.14	-1.46	-2.69	-0.67	-1.15	0.29	-0.46	0.88	1.06	0.27	0.13	-0.15	-0.76
Smo145591 (PACid_15422126)	0.23	0.03	0.1	0.17	0.31	0.46	0.22	0.54	0.51	0.5	0.48	0.17	-1.3	-1.18	-1.04	-0.99	-0.21	-0.48	-0.65	-0.92	-0.77	-0.77	0.23	0.1	0.51	-0.23	0.67	0.82	-0.08	0.06	-0.65	-0.41
Smo147927 (PACid_15408609)	0.73	0.67	0.8	0.51	0.54	0.51	0.61	0.63	0.51	0.44	0.59	0.61	-8.28	-3.65	-8.73	-3.77	1.06	0.97	-1.31	-5.39	-2.29	-6.81	-0.29	-1.42	-3.51	-1.65	-0.08	0.22	0.75	0.58	0.33	-0.29
Smo174616 (PACid_15419185)	0.27	0.16	0.16	0.35	0.41	0.49	0.51	0.56	0.66	0.44	0.44	0.34	-1.82	-1.29	-1.38	-1.32	0.36	-0.37	-0.16	-2.9	-1.58	-2.11	-0.47	-0.82	0.12	0.33	0.68	0.78	0.18	0.2	-0.1	-0.34
Smo174833 (PACid_15420733)	1.06	0.88	0.79	0.53	0.48	0.44	0.66	0.82	0.75	0.77	0.78	0.96	-7.87	-3.62	-7.82	-4.79	0.45	0.05	-1.0	-2.13	-0.82	-6.2	-0.77	-1.96	-0.35	-1.25	-0.04	0.28	0.5	0.46	-1.04	-1.33
Smo176144 (PACid_15421177)	0.3	0.12	0.21	0.31	0.41	0.63	0.68	0.72	0.71	0.49	0.25	0.31	-1.01	-0.46	-0.82	-1.18	-0.04	-0.19	-0.9	-4.11	-0.61	-3.25	-0.46	-0.57	0.01	-0.42	0.69	0.61	-0.19	-0.15	0.01	0.22
Smo177574 (PACid_15404891)	0.05	0.1	0.27	0.45	0.61	0.72	0.82	0.65	0.6	0.24	0.29	0.05	-2.47	-0.88	-0.96	-1.92	0.47	-0.12	-0.95	-0.52	-0.18	-1.22	-0.71	-1.21	-0.3	-1.34	0.82	0.81	0.15	0.16	-0.22	-0.57
Smo228849 (PACid_15410822)	0.23	0.2	0.17	0.39	0.46	0.42	0.55	0.64	0.63	0.43	0.42	0.42	-2.68	-0.51	-0.93	-1.84	0.39	-0.13	-0.75	-2.01	-2.21	-1.65	-0.45	-0.99	0.3	-0.35	0.86	1.14	0.13	0.15	-0.42	-1.15
Smo229587 (PACid_15411535)	0.44	0.35	0.23	0.41	0.36	0.46	0.58	0.54	0.6	0.65	0.64	0.69	-1.53	-1.38	-1.55	-1.27	0.45	-0.0	-0.39	-2.97	-1.02	-1.77	-0.02	-0.56	-0.1	-0.2	-0.29	-0.12	0.34	0.32	-0.06	-0.32
Smo235372 (PACid_15405350)	0.61	0.63	0.45	0.49	0.05	0.37	0.39	0.72	0.78	0.59	0.83	0.92	-4.23	-6.28	-6.79	-2.02	0.13	-0.3	-0.11	-3.1	-1.31	-5.22	-0.37	-0.23	0.33	0.32	-0.71	-0.78	0.28	0.15	0.34	0.45
Smo25109 (PACid_15419116)	0.56	0.59	0.62	0.59	0.48	0.57	0.58	0.47	0.33	0.17	0.27	0.51	-5.87	-3.31	-5.46	-3.97	0.58	0.28	-1.13	-4.36	-0.71	-5.77	-0.38	-1.31	0.24	-0.32	0.83	1.08	0.26	0.24	-0.05	-0.41
Smo270732 (PACid_15422510)	-0.02	-0.32	-0.16	0.12	0.3	0.51	0.95	0.91	0.82	0.66	0.59	0.36	-2.12	-1.66	-1.83	-1.97	0.4	-0.03	-1.12	-2.63	-1.86	-2.34	-0.45	-0.55	-0.75	-0.25	1.1	1.23	0.36	0.32	-0.32	-1.06
Smo272095 (PACid_15423109)	0.83	0.92	0.85	0.7	0.47	0.57	0.67	0.65	0.57	0.64	0.57	0.92	-2.72	-2.68	-2.44	-2.53	0.6	0.24	-1.12	-3.08	-1.38	-4.24	-0.38	-1.2	-0.18	-1.56	-0.2	0.11	0.59	0.43	-0.86	-1.64
Smo402255 (PACid_15402749)	-0.01	-0.25	0.01	-0.08	0.37	0.49	0.67	0.84	0.83	0.56	0.26	0.18	-2.98	-1.52	-0.31	-1.98	0.16	-0.64	-0.43	-2.38	-1.15	-1.42	-0.68	-0.75	0.72	0.15	1.02	0.77	0.28	0.22	-0.39	-0.6
Smo403333 (PACid_15406423)	0.75	0.65	0.5	0.44	0.44	0.48	0.5	0.56	0.44	0.51	0.55	0.61	-2.8	-1.77	-2.74	-2.14	0.47	0.28	-0.75	-2.15	-0.94	-1.17	-0.34	-0.83	0.34	-1.49	0.5	0.57	0.41	0.28	-1.02	-1.15
Smo404832 (PACid_15413279)	0.36	0.41	0.38	0.52	0.54	0.72	0.83	0.73	0.83	0.64	0.73	0.59	-3.77	-2.58	-2.35	-3.19	0.76	0.29	-1.1	-5.98	-1.28	-3.01	-0.54	-1.34	0.15	-1.55	0.53	0.52	0.44	0.27	-0.64	-0.99
Smo405094 (PACid_15410204)	0.14	0.03	0.08	0.18	0.17	0.27	0.56	0.54	0.46	0.35	0.34	0.34	-3.37	-1.53	-1.04	-2.48	0.37	-0.28	0.04	-3.04	-1.32	-2.53	-0.44	-0.89	-0.52	0.85	0.98	1.25	0.34	0.38	-0.04	-0.59
Smo413416 (PACid_15414475)	-0.27	0.36	0.68	0.82	0.67	0.57	0.77	0.88	0.85	0.79	0.74	0.62	-4.57	-2.84	-3.07	-2.69	0.07	-0.7	-1.15	-3.91	-1.33	-4.42	-0.48	-0.98	0.2	-0.08	0.56	0.63	-0.05	-0.16	-0.27	0.02
Smo413620 (PACid_15415984)	0.02	-0.22	-0.06	0.37	0.41	0.36	0.67	0.77	0.81	0.62	0.61	0.4	-1.59	-1.69	-1.44	-1.39	0.54	-0.37	-0.7	-0.64	-1.59	-1.64	0.13	-0.01	-0.07	-0.64	0.21	0.33	0.34	0.29	0.1	-0.6
Smo413851 (PACid_15417549)	-0.17	0.05	0.24	0.57	0.31	0.49	1.14	0.96	0.93	0.91	0.58	0.52	-2.16	-1.41	-0.82	-2.04	0.35	-0.25	-1.2	-1.6	-1.96	-2.68	-0.55	-0.95	-0.18	0.25	0.13	0.2	0.05	-0.0	-0.18	-0.36
Smo417198 (PACid_15401614)	0.57	0.56	0.55	0.49	0.38	0.38	0.54	0.8	0.5	0.42	0.44	0.57	-2.93	-1.69	-2.72	-2.25	0.14	-0.4	-1.46	-3.2	-0.54	-4.47	-0.72	-1.7	0.93	-0.61	1.04	1.18	0.08	-0.05	-0.49	-1.41
Smo423983 (PACid_15403151)	0.16	0.07	0.22	0.33	0.47	0.47	0.64	0.56	0.69	0.43	0.5	0.33	-0.85	-0.44	-1.13	-0.63	0.28	-0.34	-0.3	-2.0	-1.52	-2.04	-0.54	-0.66	-0.32	-0.49	0.67	0.89	0.11	0.2	-0.43	-0.57
Smo438082 (PACid_15418180)	-0.12	0.53	0.54	0.6	0.31	0.26	0.75	0.71	0.68	0.72	0.6	0.44	-1.85	-1.37	-2.13	-1.31	0.39	-0.81	-0.77	-1.97	-0.92	-3.04	-0.18	-0.62	-0.01	-0.16	0.34	0.24	0.17	0.04	0.12	0.04
Smo438181 (PACid_15418982)	-0.25	0.55	0.49	0.76	0.61	0.69	1.0	1.07	0.96	0.76	0.73	0.58	-1.74	-1.07	-0.56	-1.45	0.1	-0.43	-1.59	-6.58	-4.03	-	-0.4	-1.29	-1.59	-0.55	0.31	0.21	-0.32	-0.39	0.17	0.34
Smo438240 (PACid_15419616)	-0.35	0.45	0.52	0.45	0.34	0.3	0.86	0.64	0.72	0.62	0.51	0.43	-1.67	-1.12	-2.38	-1.31	0.56	-0.58	-0.9	-3.68	-0.15	-1.76	-0.16	-0.72	0.25	-0.67	0.03	-0.04	0.26	0.16	0.24	0.13
Smo439533 (PACid_15402433)	0.07	-0.08	0.33	0.64	0.65	0.72	0.91	0.97	0.63	0.53	0.22	0.27	-2.58	-1.69	-0.83	-2.44	0.13	-0.41	-0.57	-	-0.4	-1.52	-0.76	-1.38	-0.05	-0.14	0.73	0.84	0.17	0.12	-0.29	-0.77
Smo440512 (PACid_15405602)	0.42	0.39	0.37	0.53	0.43	0.47	0.48	0.33	0.49	0.42	0.44	0.45	-1.9	-2.0	-1.37	-1.42	0.51	-0.33	-0.06	-3.85	-2.14	-4.21	-0.46	-0.79	-0.03	0.17	0.52	0.71	0.22	0.31	0.1	-0.02
Smo55147 (PACid_15418425)	0.35	0.52	0.62	0.71	0.69	0.75	0.92	0.8	0.71	0.63	0.54	0.59	-4.72	-2.76	-2.19	-3.33	0.36	-0.04	-1.26	-3.33	-0.32	-4.11	-0.89	-1.03	0.08	-1.41	0.59	0.79	0.2	0.17	-1.22	-1.01
Smo60716 (PACid_15415584)	0.62	0.52	0.55	0.49	0.53	0.66	0.69	0.79	0.76	0.68	0.62	0.67	-3.36	-2.38	-3.09	-2.48	-0.06	-0.04	-1.09	-4.02	-2.05	-4.08	-0.83	-1.25	0.04	-0.38	1.03	1.1	-0.22	-0.22	-0.51	-0.64
Smo63559 (PACid_15422769)	0.28	0.42	0.66	0.52	0.61	0.56	0.7	0.92	0.78	0.8	0.65	0.51	-3.58	-2.44	-2.63	-2.23	0.12	-0.03	-0.55	-6.47	-3.62	-3.0	-0.31	-0.96	-0.66	-0.16	0.83	0.85	0.32	0.24	-0.89	-1.06
Smo63596 (PACid_15422833)	0.42	0.63	0.59	0.49	0.44	0.7	0.75	0.61	0.48	0.52	0.31	0.52	-2.42	-2.22	-1.47	-1.61	0.45	-0.1	-0.6	-1.72	-0.15	-3.93	-0.32	-1.16	-0.22	-1.14	0.56	0.81	0.36	0.35	-1.29	-1.12
Smo64169 (PACid_15422695)	0.01	0.1	0.24	0.47	0.51	0.7	0.86	0.97	0.8	0.78	0.65	0.58	-6.94	-4.27	-6.83	-3.58	0.18	-0.36	-0.86	-2.7	-1.34	-6.77	-0.58	-1.59	0.91	-1.34	0.99	1.08	0.36	0.26	-0.58	-1.7
Smo68704 (PACid_15416511)	1.0	1.13	0.84	0.64	0.62	0.46	0.3	0.1	0.1	0.1	0.03	0.54	-4.79	-4.66	-9.46	-3.12	0.81	0.73	-0.28	-3.83	-1.2	-8.2	-0.3	-1.24	0.4	-1.6	0.29	0.53	0.68	0.61	-0.9	-1.1
Smo74261 (PACid_15408300)	0.18	0.19	0.12	0.41	0.53	0.55	0.83	0.99	0.88	0.72	0.65	0.51	-5.12	-2.85	-2.5	-2.81	0.15	-0.73	-0.78	-2.29	-1.18	-2.6	-0.63	-1.21	0.43	-0.23	0.88	1.0	0.03	0.02	-0.36	-0.66
Smo75269 (PACid_15411346)	-0.1	0.06	0.16	0.38	0.46	0.67	0.83	0.68	0.68	0.51	0.48	0.13	-4.04	-2.28	-1.53	-3.05	0.74	-0.16	-1.08	-0.8	0.03	-0.69	-0.62	-1.35	0.13	-0.52	0.47	0.78	0.27	0.29	-0.33	-0.79
Smo75294 (PACid_15411418)	0.26	0.19	0.27	0.49	0.78	0.56	0.67	0.51	0.6	0.4	0.19	0.34	-1.26	-2.69	-2.22	-0.94	0.57	0.12	-0.54	-3.26	-0.49	-0.68	-0.22	-0.6	-0.16	-0.5	0.15	0.18	0.26	0.21	0.02	-0.22
Smo77263 (PACid_15417154)	-0.37	-0.47	-0.09	0.31	0.55	0.6	0.58	0.47	0.59	0.26	0.12	0.07	-2.94	-1.16	-1.4	-1.85	0.29	-0.52	-0.91	-1.26	-0.59	-1.52	-0.43	-0.82	1.19	-1.18	1.1	0.96	0.13	0.12	-0.1	0.36
Smo85247 (PACid_15418453)	0.14	0.01	0.23	0.25	0.25	0.41	0.84	0.67	0.73	0.58	0.51	0.47	-1.92	-1.21	-1.06	-1.82	0.58	0.62	-0.92	-1.56	-1.48	-2.53	-0.55	-0.75	-0.95	-0.66	0.46	0.63	0.49	0.4	-0.03	-0.46
Smo85667 (PACid_15421429)	0.92	1.0	0.85	0.73	0.44	0.25	0.54	0.64	0.57	0.54	0.66	0.9	-3.14	-3.12	-2.6	-2.29	0.77	-0.08	-0.83	-3.04	-4.48	-	-0.1	-0.77	-1.07	-1.94	-0.43	-0.01	0.93	0.88	-0.86	-1.2
Smo85818 (PACid_15422862)	0.37	0.67	0.37	0.4	0.2	0.4	0.59	0.6	0.71	0.66	0.56	0.51	-0.42	-1.47	-1.08	0.06	-0.06	-0.7	-0.14	-3.44	-2.11	-2.48	-0.42	-0.16	-0.22	0.1	0.3	0.57	0.06	0.1	-1.1	-1.3
Smo92189 (PACid_15416236)	0.38	0.25	0.26	0.29	0.49	0.35	0.72	0.75	0.73	0.53	0.56	0.52	-2.1	-1.83	-1.4	-1.74	0.4	0.01	-0.68	-5.78	-1.18	-7.87	-0.45	-1.49	-0.53	-0.4	0.79	0.65	0.48	0.3	0.06	-0.07
Smo97487 (PACid_15410850)	0.25	0.21	0.24	0.49	0.32	0.52	0.64	0.64	0.73	0.44	0.59	0.33	-0.38	-0.43	-1.45	-0.67	-0.1	-0.32	-0.53	-3.44	-1.48	-2.63	-0.44	-0.42	0.14	-0.15	0.61	0.62	-0.07	-0.14	-0.43	-0.34
Smo98333 (PACid_15412856)	0.31	0.22	0.53	0.49	0.51	0.38	0.51	0.76	0.9	0.72	0.74	0.6	-6.77	-3.46	-4.9	-3.46	0.31	0.23	-0.36	-2.74	-0.93	-5.04	0.08	-0.28	-0.98	-0.32	-0.08	0.07	0.48	0.38	0.22	0.03
Smo98955 (PACid_15417483)	0.12	0.2	-0.05	0.31	0.69	1.01	0.91	0.69	0.66	0.67	0.3	0.56	-1.77	-1.44	-0.58	-1.48	-0.15	-0.83	-0.51	-6.67	-4.22	-3.07	-0.3	-0.51	-0.86	-0.29	0.82	0.99	-0.06	0.02	-0.23	0.06

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.