Heatmap: Cluster_203 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo110629 (PACid_15408919)
-0.25 -0.05 0.04 0.37 0.47 0.6 0.62 0.76 0.54 0.18 -0.17 -0.04 -1.13 -0.98 -0.63 -0.79 0.18 -0.59 -0.28 -1.47 -0.74 -0.8 -0.22 -0.3 0.75 -0.39 0.53 0.8 0.05 0.09 -0.14 -0.63
Smo11493 (PACid_15402595)
0.1 0.66 0.63 0.73 0.61 0.62 0.8 0.5 0.42 0.46 0.48 0.49 -0.97 -0.84 -1.39 -0.86 0.37 -0.07 -0.41 -1.46 -0.66 -2.35 -0.33 -0.89 -0.43 -0.91 -0.59 -0.5 0.14 0.11 -0.06 0.12
Smo117112 (PACid_15403168)
0.48 0.32 0.37 0.58 0.55 0.67 0.73 0.89 0.74 0.62 0.45 0.51 -3.48 -2.51 -3.73 -2.63 0.34 -0.29 -0.84 -1.96 -0.29 -2.25 -0.6 -1.27 -0.01 0.12 0.28 0.59 0.23 0.07 -0.2 -0.74
Smo126991 (PACid_15413963)
0.01 0.08 0.48 0.5 0.49 0.66 0.74 0.49 0.38 0.13 0.01 -0.06 -1.21 -1.03 -0.49 -1.01 0.38 -0.14 -0.53 -0.87 -0.49 -0.87 -0.36 -0.45 0.44 -0.26 0.42 0.6 0.02 -0.05 -0.35 -0.9
Smo130316 (PACid_15420984)
0.33 0.42 0.56 0.6 0.46 0.67 0.81 0.79 0.68 0.63 0.62 0.58 -7.35 -5.43 -6.82 -5.19 0.68 0.07 -1.05 -1.68 -0.02 -3.5 -0.54 -1.65 -0.09 -1.45 0.71 0.92 0.3 0.27 -0.94 -1.35
Smo131328 (PACid_15401633)
0.42 0.14 0.22 0.17 0.29 0.32 0.46 0.46 0.6 0.49 0.54 0.46 -2.03 -0.86 -1.08 -1.69 0.5 -0.05 -0.64 -0.85 -0.53 -1.16 -0.47 -0.73 0.08 -0.13 0.37 0.5 0.16 0.15 -0.11 -0.22
Smo134640 (PACid_15412790)
0.15 -0.17 -0.18 0.67 0.62 0.8 0.78 1.0 1.01 0.57 0.75 0.57 -3.52 -2.59 -1.1 -3.42 0.09 -4.5 -1.48 - 0.13 -2.09 -1.28 -2.3 -0.03 -0.93 1.06 1.28 0.13 0.18 -0.18 -0.98
Smo141857 (PACid_15412778)
0.44 0.3 0.41 0.48 0.48 0.55 0.44 0.71 0.53 0.33 0.34 0.57 -1.48 -1.24 -0.86 -0.76 0.11 -0.24 -0.38 -1.22 -1.38 -1.99 -0.34 -0.49 -0.69 0.17 0.61 0.59 0.14 0.17 -0.61 -0.93
Smo143134 (PACid_15413272)
0.26 0.33 0.53 0.59 0.6 0.62 0.86 0.6 0.51 0.38 0.28 0.34 -3.07 -2.35 -2.09 -2.42 0.53 -0.06 -1.01 -3.14 -1.46 -2.69 -0.67 -1.15 0.29 -0.46 0.88 1.06 0.27 0.13 -0.15 -0.76
Smo145591 (PACid_15422126)
0.23 0.03 0.1 0.17 0.31 0.46 0.22 0.54 0.51 0.5 0.48 0.17 -1.3 -1.18 -1.04 -0.99 -0.21 -0.48 -0.65 -0.92 -0.77 -0.77 0.23 0.1 0.51 -0.23 0.67 0.82 -0.08 0.06 -0.65 -0.41
Smo147927 (PACid_15408609)
0.73 0.67 0.8 0.51 0.54 0.51 0.61 0.63 0.51 0.44 0.59 0.61 -8.28 -3.65 -8.73 -3.77 1.06 0.97 -1.31 -5.39 -2.29 -6.81 -0.29 -1.42 -3.51 -1.65 -0.08 0.22 0.75 0.58 0.33 -0.29
Smo174616 (PACid_15419185)
0.27 0.16 0.16 0.35 0.41 0.49 0.51 0.56 0.66 0.44 0.44 0.34 -1.82 -1.29 -1.38 -1.32 0.36 -0.37 -0.16 -2.9 -1.58 -2.11 -0.47 -0.82 0.12 0.33 0.68 0.78 0.18 0.2 -0.1 -0.34
Smo174833 (PACid_15420733)
1.06 0.88 0.79 0.53 0.48 0.44 0.66 0.82 0.75 0.77 0.78 0.96 -7.87 -3.62 -7.82 -4.79 0.45 0.05 -1.0 -2.13 -0.82 -6.2 -0.77 -1.96 -0.35 -1.25 -0.04 0.28 0.5 0.46 -1.04 -1.33
Smo176144 (PACid_15421177)
0.3 0.12 0.21 0.31 0.41 0.63 0.68 0.72 0.71 0.49 0.25 0.31 -1.01 -0.46 -0.82 -1.18 -0.04 -0.19 -0.9 -4.11 -0.61 -3.25 -0.46 -0.57 0.01 -0.42 0.69 0.61 -0.19 -0.15 0.01 0.22
Smo177574 (PACid_15404891)
0.05 0.1 0.27 0.45 0.61 0.72 0.82 0.65 0.6 0.24 0.29 0.05 -2.47 -0.88 -0.96 -1.92 0.47 -0.12 -0.95 -0.52 -0.18 -1.22 -0.71 -1.21 -0.3 -1.34 0.82 0.81 0.15 0.16 -0.22 -0.57
Smo228849 (PACid_15410822)
0.23 0.2 0.17 0.39 0.46 0.42 0.55 0.64 0.63 0.43 0.42 0.42 -2.68 -0.51 -0.93 -1.84 0.39 -0.13 -0.75 -2.01 -2.21 -1.65 -0.45 -0.99 0.3 -0.35 0.86 1.14 0.13 0.15 -0.42 -1.15
Smo229587 (PACid_15411535)
0.44 0.35 0.23 0.41 0.36 0.46 0.58 0.54 0.6 0.65 0.64 0.69 -1.53 -1.38 -1.55 -1.27 0.45 -0.0 -0.39 -2.97 -1.02 -1.77 -0.02 -0.56 -0.1 -0.2 -0.29 -0.12 0.34 0.32 -0.06 -0.32
Smo235372 (PACid_15405350)
0.61 0.63 0.45 0.49 0.05 0.37 0.39 0.72 0.78 0.59 0.83 0.92 -4.23 -6.28 -6.79 -2.02 0.13 -0.3 -0.11 -3.1 -1.31 -5.22 -0.37 -0.23 0.33 0.32 -0.71 -0.78 0.28 0.15 0.34 0.45
Smo25109 (PACid_15419116)
0.56 0.59 0.62 0.59 0.48 0.57 0.58 0.47 0.33 0.17 0.27 0.51 -5.87 -3.31 -5.46 -3.97 0.58 0.28 -1.13 -4.36 -0.71 -5.77 -0.38 -1.31 0.24 -0.32 0.83 1.08 0.26 0.24 -0.05 -0.41
Smo270732 (PACid_15422510)
-0.02 -0.32 -0.16 0.12 0.3 0.51 0.95 0.91 0.82 0.66 0.59 0.36 -2.12 -1.66 -1.83 -1.97 0.4 -0.03 -1.12 -2.63 -1.86 -2.34 -0.45 -0.55 -0.75 -0.25 1.1 1.23 0.36 0.32 -0.32 -1.06
Smo272095 (PACid_15423109)
0.83 0.92 0.85 0.7 0.47 0.57 0.67 0.65 0.57 0.64 0.57 0.92 -2.72 -2.68 -2.44 -2.53 0.6 0.24 -1.12 -3.08 -1.38 -4.24 -0.38 -1.2 -0.18 -1.56 -0.2 0.11 0.59 0.43 -0.86 -1.64
Smo402255 (PACid_15402749)
-0.01 -0.25 0.01 -0.08 0.37 0.49 0.67 0.84 0.83 0.56 0.26 0.18 -2.98 -1.52 -0.31 -1.98 0.16 -0.64 -0.43 -2.38 -1.15 -1.42 -0.68 -0.75 0.72 0.15 1.02 0.77 0.28 0.22 -0.39 -0.6
Smo403333 (PACid_15406423)
0.75 0.65 0.5 0.44 0.44 0.48 0.5 0.56 0.44 0.51 0.55 0.61 -2.8 -1.77 -2.74 -2.14 0.47 0.28 -0.75 -2.15 -0.94 -1.17 -0.34 -0.83 0.34 -1.49 0.5 0.57 0.41 0.28 -1.02 -1.15
Smo404832 (PACid_15413279)
0.36 0.41 0.38 0.52 0.54 0.72 0.83 0.73 0.83 0.64 0.73 0.59 -3.77 -2.58 -2.35 -3.19 0.76 0.29 -1.1 -5.98 -1.28 -3.01 -0.54 -1.34 0.15 -1.55 0.53 0.52 0.44 0.27 -0.64 -0.99
Smo405094 (PACid_15410204)
0.14 0.03 0.08 0.18 0.17 0.27 0.56 0.54 0.46 0.35 0.34 0.34 -3.37 -1.53 -1.04 -2.48 0.37 -0.28 0.04 -3.04 -1.32 -2.53 -0.44 -0.89 -0.52 0.85 0.98 1.25 0.34 0.38 -0.04 -0.59
Smo413416 (PACid_15414475)
-0.27 0.36 0.68 0.82 0.67 0.57 0.77 0.88 0.85 0.79 0.74 0.62 -4.57 -2.84 -3.07 -2.69 0.07 -0.7 -1.15 -3.91 -1.33 -4.42 -0.48 -0.98 0.2 -0.08 0.56 0.63 -0.05 -0.16 -0.27 0.02
Smo413620 (PACid_15415984)
0.02 -0.22 -0.06 0.37 0.41 0.36 0.67 0.77 0.81 0.62 0.61 0.4 -1.59 -1.69 -1.44 -1.39 0.54 -0.37 -0.7 -0.64 -1.59 -1.64 0.13 -0.01 -0.07 -0.64 0.21 0.33 0.34 0.29 0.1 -0.6
Smo413851 (PACid_15417549)
-0.17 0.05 0.24 0.57 0.31 0.49 1.14 0.96 0.93 0.91 0.58 0.52 -2.16 -1.41 -0.82 -2.04 0.35 -0.25 -1.2 -1.6 -1.96 -2.68 -0.55 -0.95 -0.18 0.25 0.13 0.2 0.05 -0.0 -0.18 -0.36
Smo417198 (PACid_15401614)
0.57 0.56 0.55 0.49 0.38 0.38 0.54 0.8 0.5 0.42 0.44 0.57 -2.93 -1.69 -2.72 -2.25 0.14 -0.4 -1.46 -3.2 -0.54 -4.47 -0.72 -1.7 0.93 -0.61 1.04 1.18 0.08 -0.05 -0.49 -1.41
Smo423983 (PACid_15403151)
0.16 0.07 0.22 0.33 0.47 0.47 0.64 0.56 0.69 0.43 0.5 0.33 -0.85 -0.44 -1.13 -0.63 0.28 -0.34 -0.3 -2.0 -1.52 -2.04 -0.54 -0.66 -0.32 -0.49 0.67 0.89 0.11 0.2 -0.43 -0.57
Smo438082 (PACid_15418180)
-0.12 0.53 0.54 0.6 0.31 0.26 0.75 0.71 0.68 0.72 0.6 0.44 -1.85 -1.37 -2.13 -1.31 0.39 -0.81 -0.77 -1.97 -0.92 -3.04 -0.18 -0.62 -0.01 -0.16 0.34 0.24 0.17 0.04 0.12 0.04
Smo438181 (PACid_15418982)
-0.25 0.55 0.49 0.76 0.61 0.69 1.0 1.07 0.96 0.76 0.73 0.58 -1.74 -1.07 -0.56 -1.45 0.1 -0.43 -1.59 -6.58 -4.03 - -0.4 -1.29 -1.59 -0.55 0.31 0.21 -0.32 -0.39 0.17 0.34
Smo438240 (PACid_15419616)
-0.35 0.45 0.52 0.45 0.34 0.3 0.86 0.64 0.72 0.62 0.51 0.43 -1.67 -1.12 -2.38 -1.31 0.56 -0.58 -0.9 -3.68 -0.15 -1.76 -0.16 -0.72 0.25 -0.67 0.03 -0.04 0.26 0.16 0.24 0.13
Smo439533 (PACid_15402433)
0.07 -0.08 0.33 0.64 0.65 0.72 0.91 0.97 0.63 0.53 0.22 0.27 -2.58 -1.69 -0.83 -2.44 0.13 -0.41 -0.57 - -0.4 -1.52 -0.76 -1.38 -0.05 -0.14 0.73 0.84 0.17 0.12 -0.29 -0.77
Smo440512 (PACid_15405602)
0.42 0.39 0.37 0.53 0.43 0.47 0.48 0.33 0.49 0.42 0.44 0.45 -1.9 -2.0 -1.37 -1.42 0.51 -0.33 -0.06 -3.85 -2.14 -4.21 -0.46 -0.79 -0.03 0.17 0.52 0.71 0.22 0.31 0.1 -0.02
Smo55147 (PACid_15418425)
0.35 0.52 0.62 0.71 0.69 0.75 0.92 0.8 0.71 0.63 0.54 0.59 -4.72 -2.76 -2.19 -3.33 0.36 -0.04 -1.26 -3.33 -0.32 -4.11 -0.89 -1.03 0.08 -1.41 0.59 0.79 0.2 0.17 -1.22 -1.01
Smo60716 (PACid_15415584)
0.62 0.52 0.55 0.49 0.53 0.66 0.69 0.79 0.76 0.68 0.62 0.67 -3.36 -2.38 -3.09 -2.48 -0.06 -0.04 -1.09 -4.02 -2.05 -4.08 -0.83 -1.25 0.04 -0.38 1.03 1.1 -0.22 -0.22 -0.51 -0.64
Smo63559 (PACid_15422769)
0.28 0.42 0.66 0.52 0.61 0.56 0.7 0.92 0.78 0.8 0.65 0.51 -3.58 -2.44 -2.63 -2.23 0.12 -0.03 -0.55 -6.47 -3.62 -3.0 -0.31 -0.96 -0.66 -0.16 0.83 0.85 0.32 0.24 -0.89 -1.06
Smo63596 (PACid_15422833)
0.42 0.63 0.59 0.49 0.44 0.7 0.75 0.61 0.48 0.52 0.31 0.52 -2.42 -2.22 -1.47 -1.61 0.45 -0.1 -0.6 -1.72 -0.15 -3.93 -0.32 -1.16 -0.22 -1.14 0.56 0.81 0.36 0.35 -1.29 -1.12
Smo64169 (PACid_15422695)
0.01 0.1 0.24 0.47 0.51 0.7 0.86 0.97 0.8 0.78 0.65 0.58 -6.94 -4.27 -6.83 -3.58 0.18 -0.36 -0.86 -2.7 -1.34 -6.77 -0.58 -1.59 0.91 -1.34 0.99 1.08 0.36 0.26 -0.58 -1.7
Smo68704 (PACid_15416511)
1.0 1.13 0.84 0.64 0.62 0.46 0.3 0.1 0.1 0.1 0.03 0.54 -4.79 -4.66 -9.46 -3.12 0.81 0.73 -0.28 -3.83 -1.2 -8.2 -0.3 -1.24 0.4 -1.6 0.29 0.53 0.68 0.61 -0.9 -1.1
Smo74261 (PACid_15408300)
0.18 0.19 0.12 0.41 0.53 0.55 0.83 0.99 0.88 0.72 0.65 0.51 -5.12 -2.85 -2.5 -2.81 0.15 -0.73 -0.78 -2.29 -1.18 -2.6 -0.63 -1.21 0.43 -0.23 0.88 1.0 0.03 0.02 -0.36 -0.66
Smo75269 (PACid_15411346)
-0.1 0.06 0.16 0.38 0.46 0.67 0.83 0.68 0.68 0.51 0.48 0.13 -4.04 -2.28 -1.53 -3.05 0.74 -0.16 -1.08 -0.8 0.03 -0.69 -0.62 -1.35 0.13 -0.52 0.47 0.78 0.27 0.29 -0.33 -0.79
Smo75294 (PACid_15411418)
0.26 0.19 0.27 0.49 0.78 0.56 0.67 0.51 0.6 0.4 0.19 0.34 -1.26 -2.69 -2.22 -0.94 0.57 0.12 -0.54 -3.26 -0.49 -0.68 -0.22 -0.6 -0.16 -0.5 0.15 0.18 0.26 0.21 0.02 -0.22
Smo77263 (PACid_15417154)
-0.37 -0.47 -0.09 0.31 0.55 0.6 0.58 0.47 0.59 0.26 0.12 0.07 -2.94 -1.16 -1.4 -1.85 0.29 -0.52 -0.91 -1.26 -0.59 -1.52 -0.43 -0.82 1.19 -1.18 1.1 0.96 0.13 0.12 -0.1 0.36
Smo85247 (PACid_15418453)
0.14 0.01 0.23 0.25 0.25 0.41 0.84 0.67 0.73 0.58 0.51 0.47 -1.92 -1.21 -1.06 -1.82 0.58 0.62 -0.92 -1.56 -1.48 -2.53 -0.55 -0.75 -0.95 -0.66 0.46 0.63 0.49 0.4 -0.03 -0.46
Smo85667 (PACid_15421429)
0.92 1.0 0.85 0.73 0.44 0.25 0.54 0.64 0.57 0.54 0.66 0.9 -3.14 -3.12 -2.6 -2.29 0.77 -0.08 -0.83 -3.04 -4.48 - -0.1 -0.77 -1.07 -1.94 -0.43 -0.01 0.93 0.88 -0.86 -1.2
Smo85818 (PACid_15422862)
0.37 0.67 0.37 0.4 0.2 0.4 0.59 0.6 0.71 0.66 0.56 0.51 -0.42 -1.47 -1.08 0.06 -0.06 -0.7 -0.14 -3.44 -2.11 -2.48 -0.42 -0.16 -0.22 0.1 0.3 0.57 0.06 0.1 -1.1 -1.3
Smo92189 (PACid_15416236)
0.38 0.25 0.26 0.29 0.49 0.35 0.72 0.75 0.73 0.53 0.56 0.52 -2.1 -1.83 -1.4 -1.74 0.4 0.01 -0.68 -5.78 -1.18 -7.87 -0.45 -1.49 -0.53 -0.4 0.79 0.65 0.48 0.3 0.06 -0.07
Smo97487 (PACid_15410850)
0.25 0.21 0.24 0.49 0.32 0.52 0.64 0.64 0.73 0.44 0.59 0.33 -0.38 -0.43 -1.45 -0.67 -0.1 -0.32 -0.53 -3.44 -1.48 -2.63 -0.44 -0.42 0.14 -0.15 0.61 0.62 -0.07 -0.14 -0.43 -0.34
Smo98333 (PACid_15412856)
0.31 0.22 0.53 0.49 0.51 0.38 0.51 0.76 0.9 0.72 0.74 0.6 -6.77 -3.46 -4.9 -3.46 0.31 0.23 -0.36 -2.74 -0.93 -5.04 0.08 -0.28 -0.98 -0.32 -0.08 0.07 0.48 0.38 0.22 0.03
Smo98955 (PACid_15417483)
0.12 0.2 -0.05 0.31 0.69 1.01 0.91 0.69 0.66 0.67 0.3 0.56 -1.77 -1.44 -0.58 -1.48 -0.15 -0.83 -0.51 -6.67 -4.22 -3.07 -0.3 -0.51 -0.86 -0.29 0.82 0.99 -0.06 0.02 -0.23 0.06

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.