Heatmap: Cluster_70 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo114089 (PACid_15416238)
-0.23 -0.35 0.1 0.61 0.71 0.67 0.65 0.84 0.65 0.57 0.27 -0.06 -2.14 -1.92 -6.02 -2.37 -0.07 -3.76 0.39 -3.72 -1.58 -6.04 -0.04 -0.03 -0.24 1.98 0.31 -0.3 0.16 0.03 -0.31 -0.43
Smo116855 (PACid_15405740)
-0.23 -0.32 0.13 0.58 0.61 0.46 0.6 0.82 0.63 0.63 0.35 0.15 -1.8 -2.02 -6.3 -1.87 -0.21 -0.23 0.42 -4.07 -1.8 -7.21 -0.18 -0.24 -0.46 2.03 0.26 -0.17 0.0 -0.13 -0.51 -0.69
Smo117320 (PACid_15404695)
-0.35 0.09 -0.12 0.36 0.54 0.56 0.39 0.53 -0.08 0.36 -0.11 -0.19 0.18 -1.07 -0.37 0.09 -0.89 -1.44 0.47 - - - -0.31 -0.18 -2.65 1.33 1.63 1.14 -0.4 -0.49 -0.69 -0.43
Smo117402 (PACid_15405471)
0.42 1.07 1.14 0.89 1.24 1.22 0.5 1.08 -0.24 0.2 0.86 0.45 - -1.12 -0.99 - - -2.35 -1.23 - - - - -4.9 -2.25 1.76 0.9 1.21 -4.27 - -0.46 -0.07
Smo125279 (PACid_15405458)
0.48 -0.21 1.07 0.82 1.08 0.94 0.78 1.28 1.32 0.93 1.58 0.74 - -0.17 -0.36 - - - -4.16 - - - - -5.68 -3.63 1.64 0.68 1.06 - - - -
Smo135166 (PACid_15411947)
0.61 0.52 0.31 0.08 0.35 0.37 0.43 0.18 -0.02 0.5 0.55 0.43 -0.98 -0.6 0.07 -0.85 -0.85 -1.57 -0.57 -2.7 -6.52 -0.56 -1.04 -1.07 -1.67 1.8 1.08 1.34 -0.62 -0.69 -1.83 -1.59
Smo140340 (PACid_15405936)
0.26 0.36 0.19 0.44 0.54 0.33 0.43 0.42 0.39 0.35 0.43 0.39 -1.66 -1.2 -0.35 -0.94 -0.15 -0.53 -0.46 -1.75 -1.0 -0.85 -0.88 -1.25 0.3 0.75 0.97 1.0 -0.31 -0.21 -0.6 -1.06
Smo150191 (PACid_15411806)
0.05 -0.12 -0.09 0.36 0.73 0.74 0.29 0.86 0.2 0.54 0.14 0.06 -0.78 -1.16 -3.93 -0.71 -2.15 -2.71 -0.7 -3.82 -1.67 -3.9 -0.86 -0.83 -1.09 1.77 2.02 1.65 -2.0 -2.16 -1.44 -0.96
Smo163608 (PACid_15408994)
0.29 0.29 0.31 0.2 0.27 0.23 0.2 0.32 0.2 0.38 0.36 0.16 -0.29 -0.43 -0.21 -0.1 -0.74 -1.39 -0.2 -1.04 -0.5 -0.22 -0.59 -0.55 -0.46 1.04 0.81 0.85 -0.33 -0.29 -1.03 -1.02
Smo230764 (PACid_15416202)
0.38 0.24 0.47 0.48 0.84 0.17 -0.040.23 0.4 1.49 0.69 0.8 -0.2 -5.94 -4.69 -3.19 -4.11 -4.43 -1.15 -6.68 -4.47 -3.59 -2.61 -2.74 -0.19 2.16 1.21 2.12 -4.59 -4.46 -5.02 -4.95
Smo27842 (PACid_15407916)
0.6 0.59 0.07 0.62 0.99 0.71 0.28 0.72 0.57 0.99 0.71 0.53 -1.62 -1.18 -0.64 -1.38 -1.9 -3.67 -1.51 -4.13 - - -1.65 -1.45 -2.03 1.89 1.31 1.45 -1.76 -1.71 -2.5 -2.31
Smo402260 (PACid_15402772)
0.59 0.06 0.46 0.49 0.39 0.23 0.56 0.64 0.04 0.52 0.83 0.06 -2.14 -0.0 0.58 -2.5 -3.34 -3.37 -2.9 - -2.18 - -2.81 -3.16 -2.38 1.73 1.7 2.36 -4.18 -3.39 -3.86 -3.51
Smo403579 (PACid_15407984)
0.65 0.61 0.45 0.81 0.89 0.81 0.38 0.59 0.86 0.78 0.68 0.83 -4.8 -1.68 -2.79 -4.74 -4.45 -0.83 -3.61 - -5.15 - -4.45 -3.83 -5.39 1.66 2.07 1.84 -4.71 -5.91 -4.71 -5.58
Smo403932 (PACid_15411144)
-0.17 0.22 0.36 0.25 -0.14 0.66 0.62 1.22 0.65 0.96 0.88 0.67 -5.02 -5.32 -3.62 -5.03 -0.77 -3.15 0.11 - - - 0.42 -0.86 -1.74 2.42 -0.25 0.59 -0.56 -0.09 -1.31 -1.59
Smo405613 (PACid_15414685)
0.64 0.25 0.3 0.36 0.08 0.45 0.27 0.29 0.28 0.23 0.29 0.12 -2.13 -2.0 -1.01 -1.81 -0.96 -1.13 -1.17 -1.06 -0.58 -0.19 -1.36 -1.71 0.71 0.78 1.64 1.8 -0.99 -1.14 -1.24 -1.13
Smo405957 (PACid_15416980)
0.77 0.07 0.92 0.5 0.94 0.64 0.37 1.0 0.72 1.4 0.79 0.89 -4.66 0.72 -0.21 -5.52 -4.82 - -1.58 - - - - -5.89 -2.39 1.63 1.33 1.34 - - - -
Smo407730 (PACid_15421140)
0.56 0.29 0.42 0.42 0.51 0.2 0.07 0.39 0.47 0.57 0.6 0.66 0.38 -0.71 -1.49 -0.02 -1.04 -0.93 -0.69 -3.5 -0.74 -0.73 -0.54 -0.36 -0.92 1.01 0.78 0.52 -0.94 -0.99 -0.79 -0.35
Smo407845 (PACid_15421930)
0.88 0.6 0.63 0.24 0.95 0.15 0.53 0.76 0.84 0.98 1.28 0.66 -3.2 -1.18 -2.58 -1.33 -1.84 -1.43 -0.66 - -3.41 - -4.07 -4.78 -1.82 0.85 1.77 1.64 -2.2 -2.32 -2.54 -2.64
Smo407856 (PACid_15421952)
0.76 0.22 -0.57 0.13 -0.48 0.01 -0.16 0.35 0.52 0.58 0.85 0.63 -2.73 -0.05 -2.19 -0.56 -2.62 -3.23 -0.75 - -1.74 - -2.82 -2.44 -0.65 2.35 1.9 1.61 -1.93 -1.77 -1.9 -1.58
Smo410255 (PACid_15404079)
-0.8 -0.97 0.28 0.7 0.71 0.65 0.63 1.25 0.67 0.49 0.06 -0.48 -4.37 -5.61 -6.42 -4.55 -1.11 -2.81 -1.93 -4.42 -0.24 -4.77 -1.45 -2.42 1.21 2.46 1.29 0.7 -1.05 -1.8 -0.55 -1.56
Smo410480 (PACid_15405719)
0.55 0.48 0.64 0.59 0.84 0.71 0.51 0.65 0.63 0.65 0.83 0.61 0.02 -0.62 -1.42 -0.66 -2.38 -1.41 -1.99 -2.02 -2.09 - -1.15 -1.01 -0.34 1.54 1.1 0.62 -2.51 -2.09 -2.04 -1.77
Smo412048 (PACid_15408410)
0.22 0.53 0.57 0.42 0.3 0.57 0.56 0.87 0.8 0.68 0.83 0.86 -2.69 -0.26 -0.03 -1.94 -2.62 -0.91 -1.52 -4.63 -0.8 - -2.36 -1.2 0.21 1.69 1.16 0.78 -2.31 -2.15 -3.56 -2.1
Smo412240 (PACid_15410016)
0.41 0.62 0.98 0.48 0.63 0.69 0.74 0.83 0.53 0.61 0.65 0.5 -4.1 0.07 0.28 -5.5 -4.74 -4.34 -3.27 -1.01 -1.36 -0.34 -4.46 -3.14 -1.25 1.19 1.72 1.45 -4.67 -5.25 -4.89 -5.96
Smo415080 (PACid_15417334)
0.44 0.67 0.15 0.55 0.26 0.56 0.37 0.24 0.24 0.47 -0.18 0.34 -0.65 -1.11 -0.64 -0.5 -0.8 -0.53 -0.03 0.16 -5.97 -1.25 -0.57 -0.76 -2.86 0.89 1.3 1.15 -0.76 -0.74 -0.68 -0.69
Smo416451 (PACid_15423143)
-0.62 -0.41 0.39 0.42 1.03 -0.2 0.02 0.96 1.11 1.1 0.71 0.73 -2.23 -2.67 -4.08 -3.28 -0.93 -1.27 -0.83 - - - -1.35 -1.75 -1.83 2.4 0.73 -0.21 -0.22 -0.85 0.28 0.06
Smo416810 (PACid_15403763)
1.03 0.45 0.26 -0.11 -0.48 0.09 0.56 0.43 1.04 0.98 0.98 1.62 -1.56 1.2 -0.09 -0.03 -2.02 -1.78 -0.04 - - - -1.9 -2.26 -1.98 1.44 -0.63 -1.37 -0.89 -0.51 -0.82 -1.17
Smo416934 (PACid_15404591)
0.21 0.1 0.21 0.23 0.31 0.24 0.4 0.25 0.18 0.26 0.11 0.07 -0.26 -0.71 -0.21 -0.32 -0.72 -1.02 -0.12 -2.47 -1.36 -0.48 -0.54 -0.7 -0.74 1.12 1.26 1.3 -0.67 -0.45 -0.57 -0.59
Smo418014 (PACid_15403505)
0.52 0.49 0.84 0.9 0.71 0.37 0.2 0.24 0.32 0.57 0.69 0.53 0.11 -0.07 -0.93 -0.05 -0.94 -1.54 -0.68 -5.47 -1.32 -3.97 -0.62 -0.63 -1.58 1.02 0.8 0.66 -1.63 -1.19 -1.08 -0.45
Smo419760 (PACid_15412019)
0.65 0.26 -0.09 0.29 0.43 0.1 0.17 0.69 0.72 0.61 0.78 0.82 -1.74 -0.5 -0.56 -1.36 -2.97 -4.93 -2.32 -2.66 -1.26 -1.11 -2.42 -2.08 0.21 1.72 1.68 1.61 -2.75 -2.58 -2.5 -2.62
Smo419769 (PACid_15412027)
0.66 0.23 -0.27 0.16 0.09 -0.02 0.05 0.52 0.51 0.47 0.62 0.79 -1.44 -0.76 -0.91 -1.44 -1.38 -1.81 -1.79 -3.0 -1.07 -2.31 -1.34 -1.42 -0.04 1.62 1.88 1.7 -1.6 -1.55 -1.34 -1.75
Smo423335 (PACid_15420865)
0.74 0.66 -0.02 0.33 0.39 0.88 -0.16 0.82 0.3 0.3 0.49 0.47 -2.64 -0.2 -0.75 -2.65 -3.67 - -2.78 -2.75 -2.5 -1.09 -2.87 -3.8 0.19 1.91 2.01 1.65 -2.92 -3.55 -3.07 -4.87
Smo423776 (PACid_15401658)
-0.13 -0.05 -0.37 0.06 0.4 0.12 0.09 0.55 0.44 0.18 0.15 0.02 -0.73 -0.97 -1.07 -0.52 -0.75 -4.02 -0.97 -1.92 -3.1 -0.19 -0.41 -0.38 -0.67 1.71 1.82 1.36 -0.69 -0.83 -0.57 -0.56
Smo424143 (PACid_15422165)
0.46 0.32 0.62 0.56 0.93 0.52 0.38 0.67 0.55 0.23 0.61 0.73 -1.17 -0.24 -0.24 -0.97 -1.19 -0.59 -1.17 -0.98 -0.62 -2.2 -1.28 -1.25 -0.72 1.13 0.88 0.57 -1.44 -0.82 -1.11 -1.34
Smo424808 (PACid_15405160)
0.47 0.15 -0.42 -0.04 -0.35 -0.01 0.2 0.75 0.63 0.51 0.48 0.57 -0.9 -0.71 -1.26 -0.32 -0.88 -2.73 -0.13 -5.82 -1.92 -2.59 -0.55 -0.37 0.55 1.63 1.08 1.25 -0.72 -0.48 -0.83 -0.96
Smo429326 (PACid_15416109)
0.65 0.02 0.0 0.76 0.81 0.94 0.69 1.27 1.04 0.88 0.84 0.78 -7.45 -1.21 -1.83 -5.32 -4.7 -5.48 -4.99 -2.2 -3.89 - -5.45 -4.38 -1.36 2.08 1.42 1.6 -6.08 -4.12 -5.29 -6.7
Smo431867 (PACid_15403707)
0.55 0.16 -0.16 0.22 0.01 -0.04 0.02 0.53 0.38 0.49 0.53 0.71 -1.43 -0.67 -0.78 -1.14 -1.39 -3.22 -1.45 -2.14 -1.13 -1.72 -1.33 -1.29 0.53 1.68 1.78 1.62 -1.68 -1.54 -1.44 -1.77
Smo432445 (PACid_15403499)
0.59 0.17 -0.24 0.22 0.22 0.07 0.19 0.6 0.78 0.61 0.65 0.84 -1.22 -0.73 -1.18 -1.21 -1.52 -4.87 -1.57 -4.42 -1.6 -1.78 -1.55 -1.43 0.5 1.77 1.58 1.55 -1.54 -1.36 -1.83 -3.03
Smo437462 (PACid_15418280)
-0.16 0.05 0.09 -0.04 0.3 0.52 0.51 0.61 0.21 0.33 0.03 -0.09 -0.38 -0.71 -0.99 -0.18 -1.11 -0.84 0.33 -1.4 -2.85 -4.43 -0.89 -0.83 -0.6 0.97 1.66 1.24 -0.85 -0.78 -0.4 0.38
Smo438416 (PACid_15421012)
0.07 0.14 0.24 0.17 0.32 0.2 0.47 0.26 0.22 0.26 0.36 0.12 -0.89 -1.08 0.1 -0.64 -0.64 -0.89 -0.43 -0.29 -1.85 -1.05 -1.09 -1.14 -0.91 1.31 1.38 1.51 -0.73 -0.72 -0.95 -1.01
Smo439256 (PACid_15422500)
0.53 0.34 0.09 0.25 0.47 0.38 0.15 0.19 0.22 0.42 0.11 0.16 0.03 -0.61 0.04 0.11 -0.73 -0.59 0.23 -0.74 -1.39 -0.33 -0.56 -0.45 -0.85 0.81 0.8 0.68 -0.48 -0.49 -1.08 -1.11
Smo439331 (PACid_15423182)
0.12 0.19 0.21 0.24 0.29 0.28 0.1 0.12 0.04 0.03 0.07 -0.08 -0.3 -0.1 0.48 0.0 -0.37 -0.56 0.02 -0.74 -0.92 0.15 -0.26 -0.27 -0.79 0.49 0.86 0.77 -0.61 -0.6 -0.51 -0.36
Smo440203 (PACid_15403255)
0.17 0.03 0.04 0.23 0.25 0.11 0.31 0.48 0.5 0.58 0.54 0.39 -0.61 -0.37 -0.01 -0.59 -0.92 -1.56 -0.72 -1.18 -2.37 -1.34 -0.72 -0.75 -0.93 1.2 1.24 1.29 -0.74 -0.73 -0.57 -0.38
Smo441010 (PACid_15404636)
0.37 0.06 0.01 -0.03 0.06 0.11 0.05 0.25 0.24 0.33 0.3 0.35 -0.21 -0.45 -0.48 0.08 -0.79 -1.91 0.07 -1.09 -1.09 -0.75 -0.45 -0.26 -0.12 1.27 1.01 1.02 -0.62 -0.58 -0.64 -0.53
Smo441720 (PACid_15410156)
1.02 0.5 0.41 0.26 -0.29 0.49 0.27 0.76 0.47 0.92 0.93 0.93 -2.02 0.87 0.08 -1.85 -2.34 -1.55 -0.81 -3.96 -2.06 -0.71 -2.29 -2.81 -0.76 1.29 1.22 0.77 -2.23 -2.69 -1.52 -1.91
Smo443456 (PACid_15413848)
0.0 0.29 0.38 0.15 0.12 0.22 0.3 0.19 0.28 0.6 0.55 0.27 -1.37 -0.48 -0.28 -0.75 -0.72 -0.52 0.39 -6.84 -1.96 -4.58 -0.96 -0.94 -0.96 1.35 1.44 1.18 -0.94 -0.66 -0.74 0.1
Smo48406 (PACid_15422067)
0.42 0.09 0.52 0.44 0.68 0.13 -0.01 -0.04 0.71 0.05 0.58 0.22 -0.93 -0.6 -0.52 -0.48 -1.47 -1.78 -0.11 - -0.96 -1.81 -1.17 -1.53 -0.29 1.94 1.31 1.23 -1.29 -1.33 -1.22 -1.52
Smo65258 (PACid_15403968)
-0.29 -0.63 0.63 0.84 1.14 0.42 0.75 1.29 0.89 0.94 0.76 0.24 - - - -3.65 -3.54 -6.63 -0.56 - - - -1.71 -1.98 -0.17 2.48 0.76 1.48 -2.61 -1.63 -4.76 -5.95
Smo65428 (PACid_15405489)
0.16 0.11 1.23 1.03 1.01 1.03 0.56 1.55 1.2 0.84 0.65 0.52 -11.17 - - -3.64 -3.99 -7.92 -1.0 - - - -2.82 -2.45 -2.64 2.03 0.13 1.71 -3.6 -2.53 -4.63 -6.83
Smo70988 (PACid_15402066)
-0.08 0.22 1.09 1.06 1.17 0.96 0.84 1.35 1.09 1.05 0.92 0.69 -7.5 - - -3.93 -5.18 - -1.82 - - - -5.44 -2.64 -2.67 1.76 0.89 1.66 -3.66 -2.46 -4.73 -5.93
Smo85507 (PACid_15420647)
0.19 -0.3 0.24 0.12 0.57 -0.14 -0.2 -0.16 0.48 0.94 0.58 0.49 -2.53 -3.22 -1.36 -2.79 -4.11 - -3.1 -6.15 -2.05 0.39 -3.71 -3.16 -0.59 2.59 1.65 2.23 -4.11 -4.07 -5.31 -6.38
Smo87307 (PACid_15402586)
0.26 0.33 0.1 0.35 0.09 0.31 0.44 0.47 0.51 0.59 0.48 0.42 -2.09 -0.51 -0.03 -1.96 -1.17 -0.45 -1.85 -6.82 -4.96 - -1.64 -2.1 -0.81 1.61 1.95 1.57 -0.95 -1.37 -1.15 -1.16

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.