Heatmap: Cluster_93 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo109804 (PACid_15407126)
0.79 0.65 0.25 0.87 0.29 0.69 -0.48 0.59 1.15 1.06 0.91 0.87 - - -7.08 -4.08 -1.03 -0.33 0.47 - -3.26 -2.19 -1.78 -2.44 -0.56 1.41 0.96 0.3 -1.0 -1.62 0.09 -0.61
Smo110600 (PACid_15408879)
0.72 0.58 0.09 -0.0 -0.47 -0.46 -0.37 -0.22 -0.52 0.06 -0.25 -0.04 -0.88 1.5 0.39 0.72 0.2 -2.47 0.81 -5.75 -4.89 - 0.21 0.04 -1.15 -0.03 -0.06 0.24 0.26 0.38 0.76 -0.42
Smo111387 (PACid_15409706)
1.47 - - - - - - - - - - 3.02 - - - - - - - - - - - - - 4.4 - - - - - -
Smo115388 (PACid_15421324)
0.39 0.39 -0.57 -1.62 -1.12 -0.86 -0.88 -0.45 -0.38 -0.42 -0.5 -0.64 -7.81 - - -5.71 1.5 -0.05 0.35 - -5.68 - 2.31 0.75 -0.27 -0.73 -7.56 -4.74 2.0 0.92 1.75 -0.39
Smo115572 (PACid_15422825)
- -3.45 0.87 0.35 -1.34 0.79 0.79 -15.43 1.33 -0.8 0.2 - - -6.36 2.7 - -1.23 - - - 2.46 - -3.81 -1.95 1.95 0.64 0.8 - - - -0.4 -
Smo117223 (PACid_15403914)
- -3.45 0.87 0.35 -1.34 0.79 0.79 -15.43 1.33 -0.8 0.2 - - -6.36 2.7 - -1.23 - - - 2.46 - -3.81 -1.95 1.95 0.64 0.8 - - - -0.4 -
Smo117256 (PACid_15404020)
- -3.45 0.87 0.35 -1.34 0.79 0.79 -15.43 1.33 -0.8 0.2 - - -6.36 2.7 - -1.23 - - - 2.46 - -3.81 -1.95 1.95 0.64 0.8 - - - -0.4 -
Smo117309 (PACid_15404656)
- -3.45 0.87 0.35 -1.34 0.79 0.79 -15.43 1.33 -0.8 0.2 - - -6.36 2.7 - -1.23 - - - 2.46 - -3.81 -1.95 1.95 0.64 0.8 - - - -0.4 -
Smo117375 (PACid_15404828)
- -3.45 0.87 0.35 -1.34 0.79 0.79 -15.43 1.33 -0.8 0.2 - - -6.36 2.7 - -1.23 - - - 2.46 - -3.81 -1.95 1.95 0.64 0.8 - - - -0.4 -
Smo119850 (PACid_15414673)
- - - - - 3.52 - - - - - - - - - - 2.93 - 3.69 - - - - - - - - - - - - -
Smo119910 (PACid_15415285)
-1.1 -0.12 0.72 1.43 0.59 0.18 0.56 2.33 1.36 -0.17 0.71 1.0 - - - -0.62 - 1.61 -0.59 - - - - - - 0.2 2.18 - - - - -
Smo120147 (PACid_15412422)
0.0 0.03 -0.01 -0.48 -1.62 -0.29 -0.5 0.51 0.35 0.61 0.26 0.09 -1.54 -2.03 - -0.86 -0.75 -0.51 -0.06 -1.04 0.09 - 0.18 1.12 1.82 1.88 -0.1 -0.02 -0.76 -0.8 -0.22 -1.0
Smo145920 (PACid_15402744)
-0.02 0.05 0.14 0.05 -0.16 0.03 -0.17 -0.05 0.1 -0.01 0.03 -0.18 -2.88 -1.6 -0.29 -1.91 0.49 -0.25 0.62 -1.34 -2.06 -0.84 0.66 0.24 0.32 0.83 0.11 0.06 0.77 0.68 0.42 0.01
Smo145932 (PACid_15402771)
0.5 0.08 -0.42 -0.81 -0.76 -0.94 -1.14 -0.2 -0.08 0.34 0.47 0.54 0.65 0.34 -0.67 -0.09 -0.14 -0.19 0.76 -3.75 -0.92 -2.08 -0.13 -0.06 -1.76 1.49 -0.59 -1.42 0.47 0.29 0.48 0.98
Smo173133 (PACid_15412515)
-0.18 -0.66 0.35 1.13 1.77 1.42 0.29 -0.71 0.18 0.03 -0.29 -0.2 -1.39 -0.8 -1.0 0.92 -0.25 -0.17 2.33 -3.35 -3.9 -2.99 -2.29 -1.35 -1.17 0.41 -1.77 -1.63 -0.49 -0.82 -1.53 -2.01
Smo177353 (PACid_15403342)
0.29 0.09 -0.31 -0.0 0.53 0.37 0.24 0.26 0.3 0.2 0.27 0.11 -7.7 -7.53 - -4.39 0.9 -3.47 0.1 -4.87 -1.84 -6.12 -0.32 -1.07 -0.05 1.11 0.9 0.93 1.1 0.96 0.48 0.09
Smo18440 (PACid_15422896)
- - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - - -
Smo229863 (PACid_15413823)
0.44 -0.6 -0.33 0.0 0.09 -0.2 0.34 0.73 0.3 0.89 0.44 0.08 -0.4 0.3 -0.71 -0.46 -0.03 -1.18 0.78 -4.64 -1.01 -4.84 0.03 -0.21 -0.44 -0.14 -0.88 -0.67 0.48 0.41 1.08 0.32
Smo229868 (PACid_15413833)
0.06 0.23 0.28 0.37 0.43 0.28 0.11 0.07 0.32 0.25 0.2 0.11 -1.97 -3.1 -2.15 -0.28 -0.21 -0.92 1.11 -1.24 -1.73 -4.63 1.23 1.25 -0.08 1.24 -0.73 -0.4 -0.13 -0.39 -0.57 -1.13
Smo232195 (PACid_15417520)
-1.42 -1.21 -3.05 -3.04 -2.18 -2.13 -3.78 -1.23 -2.87 -4.05 -1.77 -2.52 -2.44 1.19 -2.81 -1.95 0.45 1.48 0.26 1.9 1.87 - 0.67 0.28 2.61 0.0 -0.24 -4.5 0.1 -0.85 -0.22 -1.24
Smo25835 (PACid_15402151)
-0.73 -0.07 0.55 0.54 0.32 -0.01 1.08 0.57 0.21 0.3 -0.47 -0.78 -1.45 0.23 -1.86 -0.16 0.63 -0.86 -1.39 -4.18 -1.14 -7.1 0.33 0.14 1.09 0.42 -0.18 -0.26 -0.25 -0.58 1.06 0.2
Smo25856 (PACid_15402205)
-0.24 0.01 0.47 0.48 0.12 -0.07 1.14 0.8 0.31 0.45 -0.04 -0.18 -2.83 0.72 -1.39 -0.15 0.6 0.06 -1.19 -6.03 -0.88 -8.22 -0.12 -0.58 -0.07 0.55 -0.83 -0.34 -0.01 -0.28 0.99 0.17
Smo27559 (PACid_15405707)
0.38 0.18 -0.05 - - 0.4 - - - - - 1.23 -0.92 - - - 1.58 - 1.55 - - - 2.77 - - 1.34 - - 2.13 1.66 0.69 -
Smo37207 (PACid_15410597)
2.62 - - - 2.71 - - - - - - - - 3.04 - - - - - - - - - - - - - - - 2.51 - 2.43
Smo402768 (PACid_15406624)
-2.59 -0.93 -0.83 0.44 0.57 -0.24 0.06 0.7 -3.72 -1.92 -3.2 -2.11 -0.87 -0.97 1.12 0.9 -0.67 -3.38 -1.05 -0.52 - - 0.39 1.72 1.31 2.44 0.53 -1.11 0.15 -0.73 -1.34 -2.32
Smo403086 (PACid_15404193)
0.32 1.65 -0.8 -0.95 -1.03 -3.35 -3.52 - -0.17 -2.81 - -1.54 1.11 2.72 1.55 2.34 0.03 -2.79 0.22 - - - -1.48 -0.66 -1.35 -0.32 - - -1.95 -0.87 1.11 -1.96
Smo403326 (PACid_15406409)
- - 0.07 - - - - - - - - - - - - 0.57 0.55 - 0.42 0.68 3.39 - - - 2.55 - 2.9 - 0.36 - - -
Smo403742 (PACid_15409549)
-0.73 -0.39 - - - - -0.38 - - 0.44 -0.4 - -0.11 1.54 - - 1.39 - 2.34 - 1.1 - - 2.4 - - 2.64 - 0.78 -0.22 - -
Smo405839 (PACid_15416181)
- - - - - - - 1.89 - 2.07 - - - 2.19 3.24 - - - - 3.34 - - - - - - - - - - - -
Smo407780 (PACid_15421247)
-0.78 - - - 2.48 3.14 2.79 - - - - - - - - - 0.51 - 1.6 - - - - - - - - - - 2.1 - 0.42
Smo412712 (PACid_15413853)
0.19 1.22 -0.3 - 1.15 - - - - - -0.09 -0.27 - 0.73 0.16 - -0.1 0.34 -1.16 - - 2.07 -0.22 1.17 - 1.56 - 2.46 -1.33 -0.16 -0.21 -1.28
Smo413870 (PACid_15417603)
- 2.35 - - - - - - - - - - - 2.28 - - 2.37 - 3.48 - - - 2.52 - - - - - - - - -
Smo41460 (PACid_15401865)
0.12 -0.05 -0.02 -0.21 -0.24 -0.32 0.03 0.03 0.24 0.43 0.28 0.09 -0.6 -0.29 -1.61 0.57 0.24 -0.07 0.2 -1.52 -1.67 -2.73 0.11 -0.01 -1.95 0.09 -0.44 -0.63 0.3 0.47 1.54 0.94
Smo416387 (PACid_15422490)
- - - 1.36 - - - - - - - - - 2.65 - - - - - - - - - - 3.93 2.99 - - - - - -
Smo418988 (PACid_15410718)
0.04 - -2.17 -1.06 0.14 - -1.9 -1.2 1.67 - - -0.33 - - - -1.68 -0.84 0.14 1.48 - - - -0.31 -1.78 3.86 0.84 -0.57 0.44 - -1.82 - -
Smo420518 (PACid_15413634)
- - - - - - 3.74 - - 4.22 - - - - - - - - - - - - - - - - - - - - - -
Smo421626 (PACid_15417285)
-0.54 -0.34 0.34 0.02 -2.1 -0.16 -0.36 -2.34 -0.55 -1.0 -1.64 -0.63 -4.61 0.81 -5.09 -2.16 -0.33 1.68 0.4 - 0.09 -3.94 -0.27 -0.97 1.0 0.66 -0.74 -1.36 1.59 0.77 1.87 0.32
Smo424516 (PACid_15402879)
4.34 -7.69 -0.34 -4.53 -6.37 -5.16 -4.23 -6.66 -0.52 2.17 -3.7 -1.73 -6.37 1.21 -5.27 0.83 - - -2.34 - - - - - - -0.82 -5.65 -1.62 - - - -
Smo426400 (PACid_15407904)
- - - - - 3.01 - - - - - - - - - 3.19 - - 2.88 - - - - - - - - - - 2.91 - -
Smo429431 (PACid_15416871)
- - 2.27 - - - 2.55 - - - - - - - - - - - - - - - - - - - 3.92 - - 2.63 - -
Smo430319 (PACid_15419251)
2.04 - 1.79 - - - -1.42 - - - -2.46 -0.72 0.22 2.62 0.47 - - - - 0.4 - - -1.47 -0.72 1.91 0.53 2.11 1.27 - - -1.43 -
Smo430558 (PACid_15420871)
1.04 1.08 - - - - - 2.41 - - - - - 2.14 2.86 - - - - - - - - - - - 3.44 - - - - -
Smo431554 (PACid_15401437)
- - - - - - - - - - - - - - - - 3.93 - - - - - 4.07 - - - - - - - - -
Smo431976 (PACid_15404465)
- - - - - - - - 3.93 - - - - - - - - - 4.07 - - - - - - - - - - - - -
Smo432043 (PACid_15422779)
- - - 1.32 - - - - - - - - -0.55 - -0.36 -0.51 -0.71 1.84 1.29 2.18 2.87 - - - 2.82 - - - - 0.29 - -0.78
Smo432170 (PACid_15401322)
0.63 - - - - - - 3.13 - 1.13 - - - - - - 3.29 - 2.36 - - - 2.21 - - - - - - - - -
Smo437951 (PACid_15421968)
-0.97 -2.34 -2.79 -2.51 -1.92 -2.25 -3.57 -1.63 -1.49 -0.13 -1.46 -0.38 -0.24 -2.18 -2.53 0.57 0.29 1.91 0.81 0.18 -0.26 -3.42 -0.14 0.76 2.25 -0.32 -1.76 -0.9 1.32 0.89 0.63 0.35
Smo444039 (PACid_15413619)
-0.03 -0.54 -0.46 -0.5 -0.51 -0.56 -0.73 -0.39 -0.15 -0.02 0.24 0.2 0.23 0.54 0.76 0.52 -0.34 -2.19 0.57 -0.94 -2.11 -5.33 -0.1 -0.04 0.03 1.56 0.74 0.62 -0.57 -0.42 0.08 0.44
Smo444666 (PACid_15418246)
0.15 0.32 0.48 0.23 0.1 -0.24 0.93 0.7 0.24 0.4 -0.27 -0.4 -2.95 -2.48 -4.76 -1.8 0.17 -0.54 -1.08 -7.89 -1.77 -8.55 0.32 0.37 0.81 1.18 -0.23 -0.13 0.07 -0.15 1.41 0.48
Smo445034 (PACid_15416457)
0.0 -0.35 -1.23 -1.79 -1.35 -1.53 -1.81 -1.69 -2.5 -1.31 -1.99 -2.01 1.26 1.47 -2.97 1.63 -1.42 0.11 0.68 - 0.34 -6.83 -0.4 -0.36 0.46 0.97 1.73 0.08 0.26 -0.34 1.15 -0.13
Smo4672 (PACid_15417421)
- - - - - - - - - - - - 2.79 2.89 - 2.97 - - 3.29 - - - - - - - - - - - - -
Smo76192 (PACid_15413574)
-0.37 -0.16 -0.6 -0.07 0.04 0.26 0.42 0.47 0.69 0.78 0.4 0.01 -4.06 -2.8 -1.77 -1.68 -0.6 -2.63 -1.11 1.68 1.59 -3.7 -1.07 -1.42 1.0 0.84 0.52 0.52 -0.91 -1.01 -0.75 -0.69
Smo78325 (PACid_15420722)
-0.03 -0.45 -0.31 -0.11 -0.29 -0.31 0.17 0.44 0.58 0.56 0.61 0.41 0.02 -0.06 -5.14 -0.6 0.03 -0.49 -0.03 -1.12 1.02 0.48 -1.24 -1.82 -0.53 0.95 -0.5 -0.6 0.23 0.2 0.24 0.22
Smo79941 (PACid_15405935)
0.04 -0.3 -0.33 -0.12 -0.18 0.09 0.33 0.16 0.22 0.59 0.25 -0.09 -0.66 -0.14 -0.5 -0.32 -0.41 -0.17 0.99 -0.66 0.19 -0.05 -0.19 0.37 -0.39 0.91 0.14 -0.09 -0.37 -0.5 -0.12 -0.61
Smo97655 (PACid_15412282)
-0.64 0.26 -0.43 -0.33 0.01 -0.03 -0.33 0.52 0.37 -0.9 0.68 -0.33 0.03 -2.15 -2.22 -0.47 -0.6 0.22 1.18 0.62 0.63 -3.92 -0.9 -0.2 -0.63 0.62 0.77 -0.7 0.24 -0.16 0.69 0.21

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.