Heatmap: Cluster_117 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo105714 (PACid_15417135)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo113909 (PACid_15419983)
- - - - - - - - - - - - - - -1.09 - - - 4.98 - - - - - - - - - - - - -
Smo113962 (PACid_15420129)
- - - - - - - - - - - - - -1.77 - -0.2 - - 4.93 - - - - - - - - - -2.86 -2.89 -2.89 -
Smo19588 (PACid_15404381)
-3.37 - - - -1.18 - - - - - - - - - -2.95 - - -1.5 4.93 - - - - - - - - - - - -3.73 -1.51
Smo19631 (PACid_15405034)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo22406 (PACid_15412617)
-5.01 -3.49 -6.12 -3.69 -6.69 -2.51 -3.17 -3.83 -4.74 -3.7 -5.66 -3.87 -5.57 -3.37 -3.02 -4.43 -3.65 -3.44 4.86 - -0.23 - -6.75 -3.73 -4.68 -4.15 -1.77 -4.51 -4.18 -2.99 -3.73 -3.1
Smo230602 (PACid_15415348)
- -8.33 -8.55 - - - - - - -6.85 -7.1 -8.4 - - - - - -4.17 4.99 - - - -8.01 - - - -4.66 -5.94 - - -7.18 -
Smo270393 (PACid_15419662)
-4.47 -4.94 -5.09 -4.84 -3.84 -4.2 -3.91 -3.91 -3.91 -3.59 -3.85 -3.74 -4.17 -3.58 -2.67 -3.64 -4.32 -4.05 4.91 -6.99 -5.44 -6.74 -4.61 -4.42 -5.06 -3.35 -3.1 -3.48 -4.16 -3.89 -4.36 -4.26
Smo27657 (PACid_15406468)
- - - - - - - - - - - - - - - - -0.8 - 4.95 - - - - - - - - - - - - -0.96
Smo37995 (PACid_15416148)
-6.53 -6.74 - - - - - - -5.98 - - - -4.68 -6.68 - -5.02 - -5.08 4.99 -3.81 -4.29 - - -6.78 - - - - - -5.76 - -
Smo38969 (PACid_15419015)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo403068 (PACid_15404140)
- - - - - - -2.0 -2.18 -1.9 - - -2.0 - -2.1 -2.57 - -1.71 - 4.9 - - - - - - - - - -0.9 - - -
Smo403771 (PACid_15409616)
-9.5 - - - - -7.94 - -8.3 - - - - -7.83 - -8.72 -7.66 - -7.31 5.0 - - - - - -5.18 -6.99 - - - -7.96 - -8.05
Smo404926 (PACid_15414077)
- -10.16 - - - - - - -10.1 - - - -6.71 - - -9.86 - - 5.0 - -5.13 - -10.07 -9.94 - - - - - - - -7.3
Smo405692 (PACid_15414838)
-3.92 -4.47 - -4.84 - - -1.29 - - - - -2.83 -4.13 - -2.53 -2.99 -2.29 -1.13 4.88 - - - - -3.28 - -3.21 - -1.09 -3.36 - -4.33 -4.38
Smo4059 (PACid_15412800)
- - - - - - - - - - - - -0.44 - -2.25 -1.27 - 0.1 4.83 - - - - - - -0.45 - - - - -1.6 -
Smo405932 (PACid_15416932)
- - - - - -1.22 - - -2.2 - -2.28 - -2.01 -1.11 - -1.98 - -1.99 4.75 - - - - - -0.05 - -0.89 0.12 -2.23 - - -2.2
Smo406147 (PACid_15413827)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo409386 (PACid_15401798)
-4.82 -3.47 - - -3.27 -1.73 - -1.94 -3.71 - - -2.55 -0.86 -1.0 0.21 -3.01 -1.69 -2.65 4.78 - - - - - - -1.26 - - -3.43 -3.31 - -3.4
Smo410546 (PACid_15406410)
- -1.63 - - - - - - - -0.1 - - -1.18 - - - - - 4.92 - - - - - - - - - - - - -
Smo411029 (PACid_15405447)
- -1.47 - - - - - - - - - - - - -1.95 - -0.23 -0.57 4.84 - - - -1.09 - - - - - -1.36 - - -1.31
Smo413717 (PACid_15416668)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo414738 (PACid_15419667)
- - - - - - -2.25 - - - - -2.22 - - - - -2.08 - 4.86 - - - -1.95 - - - -0.93 0.09 -2.24 -2.08 - -
Smo416711 (PACid_15403035)
-4.88 -4.16 -5.35 -4.9 -5.65 -6.31 -4.4 -4.9 - -5.0 -7.45 -5.05 -4.88 -5.29 -4.63 -4.77 -5.45 -3.61 4.95 -2.38 -4.39 - -5.65 -4.64 -5.23 - -4.97 -5.05 -4.35 -4.07 -7.55 -6.61
Smo417759 (PACid_15406101)
- - -0.56 - - -1.59 - - - - - - -1.62 - - -1.45 -1.63 - 4.83 - - - - - - -0.63 - - -1.9 -0.75 - -
Smo417964 (PACid_15407583)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo418611 (PACid_15408105)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo418695 (PACid_15408324)
- - - - - - - - - - - - - - -4.15 - - - 5.0 - - - - - - - - - - - - -
Smo419234 (PACid_15408004)
- - - - - - - - - -15.59 - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo420815 (PACid_15415920)
-2.99 -13.77 -12.67 -15.04 - -12.63 - - - -14.26 -21.03 - -1.27 -1.58 -17.47 -1.13 -18.0 - 4.91 - - - - - - - - - - - - -0.53
Smo424012 (PACid_15421336)
- - - - - - - - - - - - -8.79 -23.33 -22.4 -8.43 -8.55 0.76 4.92 -19.0 -18.78 -21.36 -7.44 -15.12 -17.71 -19.52 -22.21 -16.46 -15.41 -9.0 -10.74 -11.42
Smo427126 (PACid_15408621)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo429202 (PACid_15415312)
- - - - - -2.02 -4.19 -2.13 -4.43 - - - - -2.99 - -1.44 - -1.75 4.91 - - - -4.03 -1.4 - - - - -3.98 -2.98 - -
Smo429458 (PACid_15416927)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo430281 (PACid_15418660)
-4.2 -6.36 -4.24 -4.42 -3.9 -3.64 -4.28 - -4.65 -3.89 -2.87 -5.32 -5.97 - -3.31 - -5.13 -5.47 4.94 - - - -5.99 - - -2.11 -3.83 -2.92 -5.19 -5.12 -6.16 -6.21
Smo438955 (PACid_15402601)
- - - - - - - - - - - - -8.81 - - -9.36 - - 5.0 - - - - -8.17 - - - - - - - -
Smo55751 (PACid_15422907)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo5961 (PACid_15422577)
- - - - - - - - - - - - - - - -0.05 - - 4.96 - - - - - - - - - - - - -
Smo63866 (PACid_15402773)
-1.83 - - - - - - - - - - - - - - - - -0.33 4.92 - - - - - - - - - -0.44 - - -
Smo75352 (PACid_15412052)
-3.31 - - - - - - - -2.76 -2.63 - - -1.16 -2.6 - - - -1.67 4.91 - - - - - - -1.26 - - - -2.32 - -
Smo76794 (PACid_15418111)
-2.01 -2.5 -2.0 -1.72 -2.11 -1.94 -2.29 -1.74 -2.16 -1.6 -2.04 -1.97 -0.92 -5.19 -1.21 -0.39 -2.63 -1.43 4.64 - - - -3.64 -3.36 -4.81 -1.2 -1.88 -2.23 -2.62 -2.52 -2.78 -2.7
Smo77483 (PACid_15418745)
-7.95 - - -4.4 -6.37 - - - -5.66 -6.68 -4.4 -5.65 -2.68 - - -6.25 -4.34 -3.01 4.98 - - - - - - - - - -6.53 - -6.43 -
Smo78482 (PACid_15421533)
- - - - - - - - - - - - - - - - - -0.76 4.95 - - - - - - -2.01 -1.61 - - - - -
Smo85593 (PACid_15420861)
- - - - - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - -
Smo96575 (PACid_15408557)
- - - - - - -6.7 - - -6.96 - - - - - - - -3.05 4.99 - - - - -6.58 - - - - - - - -6.63
Smo97633 (PACid_15412225)
- - - - - -7.35 - - - - - - 0.04 - - - - - 4.95 - -2.81 - - - - - - - - - - -6.75
Smo98727 (PACid_15415929)
- - - - - - - - - - - - - - - -2.76 - - 4.99 - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.