Heatmap: Cluster_138 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
4.34 1.39 - - - - - - - - - -0.98 - - - - - - - - - - - - - -0.65 - - - - - - - -1.22 - - - - - -2.74 -2.09 - 1.67 4.0
4.42 -1.55 - - - - -4.68 -6.91 -8.46 -6.98 -5.9 - - -2.89 - - - -7.59 -2.7 -7.25 - - - -7.0 - - -5.37 -3.81 - - -9.06 - -6.29 -6.96 - -4.25 -1.53 - -8.14 -1.44 0.16 -5.82 -4.74 4.31
3.55 0.89 -0.09 - - -1.88 - -1.85 -0.77 -1.57 -1.04 2.42 - 0.02 2.26 - -3.65 - -0.93 -1.43 -1.58 - - 0.41 - 0.24 -1.19 - - - - - - - 1.5 -1.98 2.79 0.35 - - - - - -0.26
-0.05 2.81 2.23 2.69 - 1.81 -1.96 0.04 1.5 1.53 1.55 -5.54 -3.13 0.1 1.08 -2.05 -3.61 -3.11 -1.49 -1.84 -2.09 -1.93 -3.82 -2.75 -2.22 -2.72 -1.5 -1.43 -3.46 -4.49 -3.39 -5.89 -2.19 -4.36 -2.65 -2.17 -3.65 -4.96 -1.77 -1.72 0.23 -2.38 -0.38 0.56
4.18 3.79 1.6 - - -1.7 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.58 - - - 1.37 -1.27 - -1.45 2.34
-0.68 4.36 0.75 -5.62 - -0.06 - - - - - - -4.8 - - -8.41 -8.1 -8.5 -5.17 -1.96 1.85 - - - - - -6.56 - - - -9.76 - - - - -6.26 - - - 0.93 0.08 - 2.53 2.9
-0.16 4.07 0.13 - - -0.56 -6.68 - - - - - - - -6.07 - - - - - 1.82 - - - - - - -4.59 - - -11.32 -6.26 - -6.32 - - -6.64 -4.75 - 1.43 -0.3 - 3.16 3.09
- 4.67 1.88 - - - - - - 0.04 -0.34 - - - - - - - - - - - - - - 1.89 - - - 1.47 - - - - - - 0.88 - - -1.31 -0.67 - 0.1 1.43
3.41 0.97 1.53 1.6 - 2.79 -0.94 -0.98 -0.16 -0.33 -0.58 - -3.76 -4.13 -2.17 -5.02 -5.97 -3.47 -3.09 -2.46 -3.42 -2.12 -2.11 -1.67 -0.58 0.4 -1.69 - 0.99 -0.47 -2.64 - -3.39 -4.06 0.1 -0.42 - - -4.51 0.98 -0.31 -1.16 -0.95 1.36
3.87 0.26 2.05 2.35 - 3.18 - - - - - - - - - -4.83 - - - - - - - - 2.35 - -3.12 -1.61 - - -6.18 - - - 1.13 -2.63 - - -5.17 0.18 -2.41 - -2.87 -1.12
AT1G65680 (EXPB2)
- - - - - - - - - - - - - - - - - - - - - - - - - - -2.9 - - - -4.78 - - - - - - - - - - 3.36 5.07 -
5.14 - - - - - - - - - - - - - - - -2.56 -1.7 - - - - - - - - -0.43 - - - -2.19 - - - - - - - -2.77 -2.1 - - 2.77 -
0.45 0.22 -0.82 -2.23 - -1.18 -1.4 -1.64 -0.27 -0.06 0.1 -4.63 -1.92 0.87 1.18 -1.47 -1.1 -0.61 -0.24 -0.54 0.41 0.6 -1.34 1.86 0.71 0.73 0.32 0.59 0.45 -8.12 0.75 -0.62 0.6 0.7 -1.38 1.41 -0.4 -0.37 -0.09 0.6 -1.41 -1.4 -0.53 0.05
AT1G78360 (GSTU21)
4.11 - 0.11 - - - - -3.82 -1.46 - -2.4 - - -0.75 -1.91 0.46 -2.88 -0.74 - -2.19 - - -2.66 - - - -1.87 - - - -1.82 -0.34 -2.21 - 1.73 3.08 - - - 2.35 - 0.24 - 1.02
4.33 0.76 - - - - - - - -2.8 -2.92 - - - 2.94 - - - - - - - - - - - - - - - - - - - - - - - - -2.78 0.33 - 3.38 1.26
AT2G19990 (PR-1-LIKE)
0.65 - - - - -4.0 -0.07 -3.2 -2.57 -4.46 -3.03 -3.66 - - 3.58 0.06 -2.66 -3.84 - -1.81 1.77 -2.11 -4.12 - -4.22 -5.95 -1.65 -1.14 -0.48 - -3.2 -0.67 -4.32 2.69 - -6.48 - - -4.67 -2.51 2.84 1.23 1.83 0.66
-0.34 -2.72 -5.98 0.28 - -3.95 - - -7.57 -5.48 -7.57 - - -5.92 -3.7 1.07 1.75 2.25 0.91 0.16 2.18 2.14 -3.75 -5.98 -3.81 -0.64 2.94 1.05 -3.07 -4.25 0.91 - 0.86 -0.42 -0.14 1.26 - -6.57 -1.62 -2.35 -3.39 -2.34 -3.17 -3.68
AT2G24710 (GLR2.3)
4.21 - - - - - - - - - - - - - - - - -1.63 - - - - - - - -0.78 - - - - - - - - - - - - - 1.05 -0.23 1.78 - 4.19
AT2G24720 (GLR2.2)
5.36 - - - - - - - - - - - - - - - - - - - - - - - - -1.6 - - - - - - - - - - - - - - - 1.21 - -1.79
3.45 -0.02 - - - - - - - - - - - - - - - - - -3.66 - 2.46 - - - - 0.31 2.21 2.71 - - - - - - -4.23 - - -1.99 -3.28 0.14 - 0.34 3.5
AT2G28850 (CYP710A3)
5.04 - - - - - - - - - - - - 1.74 - -1.53 - - - - - - - - - -3.98 - - - - 0.9 - 1.01 - - - - - - - -3.2 - - 1.75
3.74 4.25 0.49 - - - - - - - - - - - - - - - - - - - - - - -0.9 - - - - - - - - - - - - - 1.11 -0.85 - 0.76 2.4
2.81 3.51 0.33 - - - - - - - - - - - - -3.14 -1.3 -2.83 - - - 0.5 - - - 1.68 -2.81 - - - 0.74 - -0.0 - 0.63 3.32 - - -3.85 0.29 -2.32 - 1.02 0.25
2.73 4.72 2.24 -3.24 - -3.07 - - -3.53 -5.5 -2.66 - - -3.8 -3.72 - -2.84 -5.97 - - - - - - - - -3.84 -2.22 - -3.66 - -3.9 - - - -4.83 - - -3.43 0.86 0.4 - -2.07 0.6
AT2G45550 (CYP76C4)
5.26 - - - - - - - - -1.67 - - - -1.12 - - - - - - -1.43 - -2.07 -1.31 - 0.06 - - - - -3.17 -1.34 - - - -0.17 -1.58 -0.19 - -1.78 - - - -
AT3G02493 (DVL2)
0.86 3.11 -0.15 1.74 - 1.5 - -4.65 - - - - - 3.17 -1.54 2.82 1.54 -2.14 - -3.5 -1.25 -2.02 - - - - - - - - -4.06 -3.14 -3.49 -3.2 -1.89 - - - -4.59 0.28 -2.49 0.3 -1.31 1.28
4.07 - - 0.04 - 0.93 - - - - - - - - - - - - - - -1.01 - - - - 3.43 - - - - - - - - - 3.2 - - - -2.14 - - 1.79 -2.31
3.43 4.34 0.1 -2.78 - -1.68 - - -5.68 -5.5 -4.27 - - - -2.93 - - -8.51 - - - - - - -6.7 -3.63 -8.02 - - -4.61 -5.58 -5.44 -6.42 -3.68 - -6.35 - - - -0.94 -0.45 - 1.74 2.65
4.25 -2.11 0.93 2.5 - 3.74 - - -1.13 -1.25 -0.48 - - - - - - - - - - - - - - -1.16 - - - - -8.13 - - - - - - - - -0.07 -3.77 - -1.65 -1.62
3.47 - 1.21 3.87 - 3.38 - -2.04 -1.55 -1.49 -2.44 - - -2.8 -1.82 - - - - - - - - - - -4.37 -6.28 - - - - - - - - -3.81 -2.27 - -4.13 0.27 -1.35 - 0.27 -0.3
4.79 2.03 0.63 - - -4.25 - - - - - - - -4.39 - -8.33 - -1.22 -3.36 -2.99 -2.28 -3.37 -0.03 - -6.13 -4.65 -2.08 - - - -2.68 - -2.95 - - -3.98 - - -5.73 -4.03 -3.49 -2.41 0.84 2.55
4.51 3.35 2.62 -2.19 - 0.95 - - - - - - - - - - - - - - - - - - - - - - - - -4.84 - -5.84 - - -3.25 - - - -0.59 -1.79 -2.78 -1.03 -0.08
4.54 2.81 3.01 - - 0.76 - - - - - - - - - - -4.44 - - - - - - - - -2.2 - - - - - - - - - - - - - -1.28 - - -1.23 1.56
5.12 1.73 - - - - - - - - - - - - - - - - - - - - - - - 0.97 - - - - - - - - - - - - - - - - - 2.01
3.4 3.29 -0.99 0.85 - -0.32 -2.29 -1.24 -0.24 -1.26 -0.87 -2.67 - -3.15 -1.6 -1.76 -1.2 -0.32 -0.43 -0.73 -1.89 -2.36 -1.01 -2.1 -2.66 -3.18 0.1 -0.97 -2.41 - -2.1 -1.48 -2.77 -4.06 -0.32 -0.2 -0.58 -1.73 -0.95 1.47 -0.39 -3.4 -1.32 1.76
AT4G15370 (PEN2)
2.64 - 1.86 3.52 - 2.46 - - - - - - - - - - 0.47 - 2.13 -1.2 - - - - - - -4.7 - - - - - - - - 1.99 - - - -1.02 -1.12 - 0.11 2.28
AT4G30080 (ARF16)
0.62 -0.88 -0.31 0.75 -8.16 0.36 -1.37 -1.48 -0.76 -0.93 -0.81 -2.67 -1.01 -0.4 0.68 -1.22 -1.13 -0.78 -0.08 0.15 0.05 0.55 0.73 1.55 1.25 -1.59 0.11 -0.17 2.08 - 0.38 -1.08 0.74 0.11 -0.38 1.36 -0.31 -1.5 -1.07 0.04 -1.31 -1.44 -0.26 0.12
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
5.21 -3.87 - - - - - - - -6.5 - - - - - -3.83 -7.32 - - - -6.24 - - - - -3.63 - - - - - - -6.79 - - - - - - - -0.02 - -1.3 2.38
3.21 2.11 0.48 4.01 - 1.58 - -2.84 -2.42 -2.25 -0.92 - - - -1.71 - -5.35 -4.51 - -2.67 -4.66 -2.2 - - - -3.29 -2.92 0.36 - - -2.83 - -2.95 - - -2.62 -3.7 - -1.16 -1.87 -0.38 - 0.52 1.64
-2.27 -4.08 -2.7 -0.57 - -1.2 0.28 1.13 1.4 0.52 1.02 -3.14 -0.86 -0.55 0.14 -0.36 -0.27 0.46 0.63 0.47 0.84 -0.22 -0.04 -2.08 -2.06 -3.43 0.92 -1.25 -0.82 - -0.9 -2.31 -0.15 -0.12 1.21 0.01 -1.84 -4.51 -0.71 -2.05 -0.17 2.36 1.77 0.04
5.2 - - - 0.44 - - - - - - - - - - - -1.02 - - - - - - - - -2.32 - - - - - - - - - -0.23 - - -3.29 -2.41 -0.65 - - 1.76
3.82 - - - - - - - - - - - - - - - - - - - - - - - - - -2.15 2.99 - - - - - - - - - - 1.4 - 2.86 2.41 - 2.69
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.64 - -2.91 -2.27 - -1.37 -4.3 -1.28 -0.61 0.22 -0.98 - 4.95 - - - -4.83 - -1.83 -3.29 -5.61 - -0.66 - - -1.32 -3.2 - -3.11 - -4.86 - -3.56 -3.99 -1.68 -1.97 -4.32 - -3.27 -3.54 -2.45 -2.85 -2.52 -3.02
3.5 3.68 0.88 - - -3.5 - - -5.34 -2.61 1.78 - - - 0.28 - - -5.84 - - 2.79 - -4.84 - - - -6.68 - - - -8.83 - -5.69 - - -2.69 - - - -1.32 -2.53 -2.69 0.92 1.71
2.69 4.03 0.67 - - -4.42 - - - -2.21 1.95 - - -3.64 0.21 -2.82 -4.13 -5.81 - - 3.08 - -3.82 - -4.14 - - - - - - - - - - -0.83 - - - -1.39 -1.51 -2.67 0.41 1.38
AT5G45070 (PP2-A8)
3.93 3.74 -4.56 - - - -6.46 -4.15 -1.72 -1.94 -1.15 -3.6 - -4.99 -2.04 -5.03 - - - -6.45 - - -6.92 - - - -6.54 - - - -1.8 - -2.35 -6.16 -2.53 -1.31 - - -8.39 -1.19 -0.16 -3.02 1.4 3.13
AT5G45080 (PP2-A6)
4.69 1.15 - - - - 1.89 -2.86 0.07 -0.31 -0.28 - - - - - - - - - - - -3.77 - - -3.27 - - - -2.12 - - -4.31 - - - - - - - 0.07 -0.01 1.46 2.05
3.39 2.68 0.83 -1.2 - 0.09 -3.26 -0.73 -0.27 -0.9 -0.9 - - -0.96 -1.8 - - -4.07 - - - -0.16 - - - -2.06 -0.84 -3.79 3.42 - -3.58 - -4.82 - - -1.1 - - -3.59 1.04 -0.52 0.8 -2.45 1.36
- - - - - - - - - - - - - - 1.43 4.68 1.77 - - - - - - - - -0.21 -0.17 - - - -0.67 - - 1.68 - - - - 2.51 -0.01 - - - -
2.88 4.63 -0.41 -1.38 - -2.45 -3.97 -4.24 -2.45 -1.79 -2.03 -5.73 - -2.81 -3.3 -3.06 -3.97 -3.27 -2.6 -3.46 -1.87 -2.98 -3.25 -3.62 -5.26 -3.99 -2.65 -5.23 -4.46 -3.69 -3.04 -5.97 -2.56 -2.14 -2.33 -3.47 -4.7 - -4.23 -2.94 -0.72 -3.5 0.55 2.27
3.49 -0.51 -3.04 - - - - 2.21 0.7 2.21 2.55 - - - -1.45 -0.58 -2.74 -1.44 - - -1.73 - - - - -2.72 -0.15 - -3.23 - -2.29 - -1.7 -0.45 0.19 -0.18 - - -3.76 -3.05 0.89 -1.98 -0.64 2.57
2.82 -0.28 -6.46 - - - -2.29 -1.3 3.35 3.63 3.12 - - - -3.76 -6.6 -5.85 -2.43 -4.0 -3.16 -6.4 - -7.48 - - -8.14 -7.62 - - - - - - - - -3.39 - -6.98 - 1.09 -3.21 -1.33 -3.77 -0.1
1.87 2.84 -0.09 -3.29 - -4.75 0.12 -3.56 -3.51 -3.98 -3.98 - - -0.05 -3.02 -1.52 -4.69 -5.23 -1.03 -2.55 1.05 -1.83 - - - -0.63 -4.98 - - 0.06 -2.0 - -0.79 - - -4.85 - - -3.79 -0.09 1.31 1.59 3.43 2.67
4.25 2.38 -2.49 - - - - - -5.01 -5.11 -2.68 0.04 2.43 - -0.06 -0.17 -1.09 -1.38 - - -1.64 - - - - -4.93 -5.46 - - - -8.5 -3.44 - 0.86 - -1.84 - - - -0.9 -0.52 - -0.29 2.51
1.06 1.38 -2.36 - - -4.11 0.3 -1.05 -1.96 -4.77 -3.16 -1.45 - 1.92 -1.18 0.28 -0.92 -0.93 -0.18 0.24 0.82 1.74 1.04 1.09 0.96 1.1 -1.09 -1.53 -4.0 -0.55 0.51 - 0.04 - -2.1 1.89 - - -0.8 -1.15 0.18 -0.86 0.96 1.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.