Heatmap: Cluster_228 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo105763 (PACid_15417245)
-0.06 -0.05 0.35 0.29 0.46 0.43 0.33 0.23 0.43 -0.17 -0.21 -0.02 0.29 0.58 1.08 0.27 -0.05 -0.61 0.35 -2.03 -3.18 -4.17 0.44 0.57 0.13 -1.0 -0.09 0.01 -0.26 -0.11 -0.88 -1.68
Smo408785 (PACid_15401950)
-0.37 -0.31 0.05 0.34 0.31 0.54 0.29 0.12 0.29 -0.25 -0.09 -0.05 0.36 0.35 1.09 0.39 -0.5 -1.03 -0.27 -3.11 -4.42 -1.65 0.55 1.01 0.23 -0.17 0.67 0.08 -0.69 -0.35 -0.76 -1.09

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.