Heatmap: Cluster_156 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo102446 (PACid_15406080)
0.4 0.24 0.25 0.17 0.1 0.19 0.57 0.25 0.38 0.43 0.38 0.26 -0.12 1.65 1.71 0.16 -0.02 -0.41 -0.45 -3.75 -5.59 -5.54 -0.89 0.0 -8.03 -0.74 -1.14 -1.2 -0.53 -0.22 -0.3 -0.44
Smo105020 (PACid_15411844)
0.37 0.32 0.39 0.23 0.32 0.38 0.36 0.21 0.51 0.54 0.49 0.37 -0.34 0.32 0.98 0.07 0.07 -0.19 -0.21 -3.55 -0.96 -3.55 -0.43 -0.6 -0.7 -0.77 -0.37 -0.15 -0.03 0.19 -0.48 -0.37
Smo109752 (PACid_15406536)
0.12 0.44 0.48 0.42 0.46 0.58 0.81 0.23 0.59 0.56 0.38 0.03 -0.25 1.54 1.59 0.04 -0.57 -0.98 -1.18 0.07 -1.73 -0.79 -1.27 -1.38 -1.41 -2.11 -1.13 -0.93 -0.95 -0.78 -1.01 -1.28
Smo111745 (PACid_15412719)
0.31 0.41 0.56 0.49 0.38 0.41 0.37 0.33 0.44 0.56 0.31 0.27 -0.31 0.64 1.02 -0.18 -0.11 -0.19 -0.65 -4.28 -2.82 -1.45 -0.12 -0.07 -0.46 -0.65 -0.55 -0.29 -0.49 -0.19 -0.35 -0.44
Smo122533 (PACid_15421176)
0.13 -0.38 -0.38 -0.21 -0.39 -0.32 -0.37 -0.17 0.2 0.08 0.26 0.23 0.28 0.88 1.14 0.42 -0.14 0.02 0.34 -0.68 -1.0 -0.29 -0.43 -0.13 -1.92 -0.29 -0.28 -0.25 0.33 0.21 -0.01 0.23
Smo125006 (PACid_15403731)
-0.09 0.11 0.21 0.4 0.44 0.54 0.47 0.27 0.06 -0.16 -0.08 -0.31 -0.13 1.02 1.11 0.05 0.11 -0.18 0.11 -1.0 -0.96 -1.0 -0.14 -0.17 -1.0 -0.8 -0.11 -0.11 -0.33 -0.26 -0.56 -0.54
Smo131954 (PACid_15406288)
0.55 0.13 0.34 0.3 0.28 0.43 0.08 0.07 0.14 0.04 0.33 0.09 -0.03 0.81 1.15 0.06 -0.17 0.4 -0.11 -1.78 -2.05 -1.4 -0.27 -0.28 -2.35 0.01 0.1 -0.0 -0.5 -0.46 -0.66 -0.32
Smo13832 (PACid_15411477)
-0.41 -0.1 0.01 -0.11 -0.27 0.2 0.65 0.29 0.87 0.85 0.69 0.5 -0.18 0.79 1.52 -0.13 0.2 -0.05 -1.29 -4.35 -4.05 -1.99 0.29 0.63 -3.32 -1.5 -1.68 -1.74 0.13 0.29 -0.45 -0.36
Smo141535 (PACid_15410469)
0.53 0.53 0.55 0.41 0.41 0.54 0.89 0.18 0.47 0.49 0.47 0.33 -0.73 0.74 1.05 -0.67 0.29 -0.2 -0.99 -1.56 -3.94 -3.1 -0.68 -0.49 -3.52 -1.27 -0.77 -0.54 -0.18 0.07 0.14 -0.19
Smo141704 (PACid_15411901)
0.17 0.18 0.02 0.34 0.05 0.39 0.55 0.29 0.38 0.29 0.16 0.14 -0.32 0.87 1.3 -0.24 0.12 0.05 -0.1 -3.32 -2.12 -1.61 -0.33 -0.27 -0.49 -0.99 -0.31 -0.43 -0.03 -0.04 -0.36 -0.14
Smo145865 (PACid_15402142)
0.22 0.31 0.22 0.32 0.38 0.35 0.35 0.14 0.32 0.18 0.13 0.15 -0.31 0.73 1.28 -0.4 -0.12 -0.41 -0.53 -0.53 -0.57 -0.37 -0.42 -0.58 0.4 -0.77 -0.41 -0.35 -0.47 -0.41 -0.77 -0.83
Smo164856 (PACid_15413669)
-0.22 -1.18 -1.49 -1.15 -0.82 -0.45 -0.15 0.26 0.62 0.76 0.69 0.4 0.8 1.32 1.94 0.74 -0.67 -0.45 0.4 -2.42 -0.7 -3.13 -0.03 0.32 -0.89 -2.02 -1.36 -1.56 -0.07 0.13 -0.65 -0.86
Smo174651 (PACid_15419269)
-0.05 0.14 0.21 0.21 0.02 0.11 0.71 0.36 0.54 0.49 0.24 0.2 -0.75 0.67 1.28 0.1 0.08 -0.54 -0.53 -2.84 -3.61 -3.0 -0.07 0.25 -1.87 -0.38 -0.49 -0.58 -0.17 -0.06 0.4 0.28
Smo178739 (PACid_15409374)
-0.27 0.46 0.56 0.56 0.47 0.55 0.67 0.27 0.12 0.03 -0.12 -0.23 -0.15 0.85 1.32 -0.19 0.25 -0.23 -0.53 -1.68 -1.68 -1.27 -0.13 -0.44 -0.99 -1.13 -0.04 -0.04 -0.34 -0.24 -0.56 -0.74
Smo186992 (PACid_15412413)
-0.58 -0.04 0.3 0.53 0.59 0.71 0.56 0.06 0.04 -0.09 -0.22 -0.52 0.45 0.76 1.76 0.43 0.44 -0.05 -0.63 -1.75 -2.06 -1.13 0.37 0.29 -2.38 -1.51 -1.24 -0.58 -0.31 0.02 -1.37 -1.47
Smo230435 (PACid_15413945)
0.11 0.11 0.28 0.16 0.24 0.23 0.29 0.03 0.37 0.22 0.27 0.07 -0.57 0.66 1.41 -0.06 0.04 -0.3 -0.24 -0.44 -0.99 -0.65 -0.18 -0.45 -2.45 -0.88 -0.27 -0.37 -0.53 -0.44 0.21 0.32
Smo231208 (PACid_15415188)
0.33 0.36 0.18 0.2 0.16 0.2 0.39 -0.06 0.41 0.66 0.52 0.7 0.48 1.14 1.45 0.65 0.03 0.52 -0.55 -4.1 -6.04 -4.3 -0.96 -0.18 -5.24 -0.57 -1.37 -1.0 -0.42 -0.37 -0.85 -1.17
Smo23468 (PACid_15415701)
-0.49 0.0 0.28 0.52 0.64 0.58 0.5 -0.04 0.16 0.06 -0.19 -0.27 0.47 0.89 1.9 0.48 0.6 -0.4 -0.37 -9.64 -8.91 -8.7 0.48 0.39 -8.93 -1.83 -1.65 -1.16 -0.02 0.3 -1.0 -1.1
Smo24390 (PACid_15417856)
0.25 0.51 0.54 0.02 -0.11 0.02 -0.01 -0.18 0.47 0.16 0.3 0.16 0.55 0.96 1.65 0.63 0.66 -0.15 -0.02 - - - 0.02 -0.97 -4.65 -0.89 -1.66 -1.11 0.28 0.27 -0.61 -0.46
Smo25174 (PACid_15419222)
0.26 0.84 0.8 0.48 0.12 0.5 0.67 0.32 0.5 0.47 0.58 0.36 -0.62 0.68 0.71 0.06 0.39 -0.09 -0.05 -1.79 -5.34 -1.32 -1.02 -1.09 -3.19 -0.69 -1.18 -1.44 -0.23 -0.07 0.05 -0.39
Smo267563 (PACid_15412068)
0.34 0.3 0.14 0.18 0.1 -0.06 0.19 0.11 0.45 0.51 0.5 0.35 -0.05 1.18 1.1 0.28 -0.18 -0.23 -0.76 -4.96 -2.64 -3.94 -0.48 -0.92 -2.72 0.42 -0.08 0.13 -0.0 0.14 -0.59 -0.28
Smo268297 (PACid_15412781)
-0.01 0.36 0.42 0.62 0.68 0.76 0.7 0.22 0.43 0.25 0.15 -0.07 -0.23 0.5 1.52 -0.16 0.62 -0.09 -1.17 -2.03 -3.62 -2.21 0.26 0.2 -2.88 -1.64 -1.2 -0.7 -0.13 0.15 -1.21 -1.54
Smo270977 (PACid_15401880)
0.06 -0.1 -0.15 -0.09 -0.08 0.0 0.08 0.07 0.18 0.32 0.31 0.28 0.15 0.95 1.25 0.26 -0.5 -0.54 0.15 -1.0 0.0 -0.69 -0.27 -0.05 -0.4 -0.08 -0.82 -0.67 -0.43 -0.43 -0.15 -0.03
Smo31776 (PACid_15419317)
0.35 0.62 0.66 0.77 0.49 0.79 0.65 0.58 0.43 0.63 0.4 0.12 -0.37 0.43 0.34 -0.1 0.23 -0.15 -0.88 -3.22 -3.11 -5.53 -0.65 -1.08 -2.48 0.03 -0.47 -0.29 -0.09 0.12 -0.36 -0.82
Smo402173 (PACid_15402092)
-0.02 0.2 0.29 0.3 0.13 0.3 0.82 0.72 0.84 0.62 0.58 0.27 -0.56 0.51 0.82 -0.17 -0.35 0.0 -0.91 -0.43 -1.7 -2.13 -0.46 -0.35 -1.37 -0.45 -0.25 -0.12 -0.36 -0.08 -0.76 -0.72
Smo40409 (PACid_15421060)
0.75 0.52 0.4 0.28 0.19 0.19 0.16 -0.07 0.09 0.21 0.35 0.25 0.65 1.16 1.22 0.64 -0.05 -0.17 -0.62 -4.54 -6.89 -4.96 -0.33 -0.19 -4.42 -0.81 -1.26 -0.8 -0.14 0.02 -0.08 -0.15
Smo404699 (PACid_15411879)
-1.08 -0.01 0.46 0.58 0.21 0.28 0.48 -0.06 0.32 -0.74 -0.46 -0.55 0.52 1.49 1.94 1.04 0.16 -1.66 -0.38 -3.0 - -1.91 -0.18 -0.86 -2.36 -1.84 -0.56 0.74 -0.39 0.2 -1.65 -1.15
Smo405772 (PACid_15415542)
-0.22 -0.06 0.0 0.22 0.21 0.22 0.4 0.06 0.51 0.39 0.27 0.08 -0.57 -0.18 1.27 0.17 0.05 -0.12 0.18 -2.73 -0.71 -1.76 0.39 0.43 -1.64 -0.38 -0.85 -0.98 -0.15 0.16 0.13 0.23
Smo40963 (PACid_15402681)
0.47 0.54 0.43 0.35 0.28 0.34 0.33 -0.11 0.18 0.27 0.16 0.19 0.34 1.46 1.38 0.43 0.5 0.37 -0.69 -9.54 -6.01 -5.47 -0.03 0.54 -6.18 -1.67 -1.72 -1.22 -0.47 -0.26 -1.05 -1.25
Smo410532 (PACid_15406387)
0.27 0.46 0.6 0.43 0.32 0.33 1.04 0.6 0.75 0.69 0.76 0.59 -0.98 0.8 1.15 -1.12 0.68 -0.45 -2.21 -3.1 -3.86 -1.86 -1.18 -1.01 -0.8 -0.98 -0.92 -0.4 -0.01 0.12 -1.19 -2.15
Smo413811 (PACid_15417442)
-0.38 -0.14 0.33 0.37 -0.24 -0.46 0.27 0.39 0.68 0.61 0.96 0.24 0.89 2.02 1.99 1.34 -0.83 -1.51 -1.83 -4.91 -2.22 -7.31 -1.17 -1.06 -4.51 -1.2 -3.64 -2.82 -0.78 -0.52 -1.57 -1.56
Smo415166 (PACid_15418049)
-0.09 0.31 0.73 0.71 0.8 0.79 0.67 0.53 0.8 0.56 0.63 0.12 0.56 0.05 1.08 -0.85 0.75 -0.67 -1.83 -3.9 -3.47 -2.08 -1.51 -1.57 -4.73 -0.86 -0.9 -0.66 -0.11 0.18 -0.32 -0.52
Smo415317 (PACid_15419459)
0.53 0.4 0.4 0.44 0.43 0.69 0.77 0.34 0.42 0.38 0.47 0.26 -0.39 0.8 1.23 0.36 0.06 -0.39 -0.16 -4.41 -2.87 -2.55 -1.02 -0.98 -3.21 -1.03 -0.47 -0.43 -0.04 0.15 -0.85 -0.89
Smo418621 (PACid_15408133)
-0.1 0.24 0.34 0.67 0.47 0.51 0.64 0.11 0.21 -0.05 -0.01 -0.29 -0.51 0.83 1.68 -0.41 0.37 -0.36 -0.45 -4.54 -3.82 -0.12 -0.17 -0.87 -2.01 -1.65 0.22 0.1 -0.61 -0.45 -0.24 -0.18
Smo424825 (PACid_15405204)
0.41 -0.09 -0.22 0.48 -0.13 -1.43 -0.45 0.12 0.64 0.51 0.54 0.93 -0.29 2.5 2.74 -0.08 -4.87 -3.15 -3.88 -2.43 0.14 -3.1 -3.82 -3.28 - -0.79 -1.24 -0.84 -3.82 -4.81 -2.25 -2.08
Smo426562 (PACid_15408870)
0.25 0.21 0.2 0.31 0.18 0.04 0.37 0.35 0.74 0.72 0.72 0.62 -0.01 0.85 1.17 -0.06 0.0 -0.31 -1.67 -1.26 -3.51 -0.77 -0.52 -0.37 -2.34 -0.39 -1.0 -0.98 -0.6 -0.4 -0.08 0.03
Smo54019 (PACid_15414762)
0.11 0.4 0.48 0.59 0.54 0.58 0.64 0.11 0.37 0.24 0.18 -0.26 -0.98 1.21 1.26 0.3 0.32 0.68 -1.06 - - -4.63 0.01 -0.07 -6.8 -1.43 -0.93 -0.48 -0.27 0.17 -0.45 -0.79
Smo59248 (PACid_15408497)
-0.14 -0.62 -0.72 -0.41 -0.36 -0.37 -0.12 -0.02 0.3 0.31 -0.25 -0.05 0.4 0.76 1.57 0.7 -0.08 -0.52 0.31 -1.94 0.35 -1.65 0.04 0.01 -0.07 -0.33 -0.67 -0.48 0.18 0.24 -0.43 -0.3
Smo67789 (PACid_15413954)
0.26 0.41 0.35 0.24 0.41 0.18 0.24 0.1 0.5 0.6 0.5 0.42 -0.18 0.33 1.22 0.32 0.47 0.04 -1.0 - -9.22 -9.0 -0.12 -0.16 -5.33 -0.76 -0.81 -0.53 0.26 0.36 -0.1 -0.22
Smo70068 (PACid_15417482)
0.07 0.33 0.31 0.27 0.22 0.3 0.39 0.13 0.43 0.32 0.31 -0.0 -0.13 0.73 1.47 0.18 0.15 -0.22 -0.79 -0.79 -2.82 -2.32 0.32 0.09 -2.81 -0.75 -0.58 0.02 -0.12 0.1 -1.0 -1.13
Smo73698 (PACid_15408531)
0.16 0.32 0.31 0.24 0.08 0.21 0.98 0.7 0.89 0.95 0.79 0.59 -0.91 0.99 0.99 -0.58 -0.13 -0.77 -1.39 -2.43 -3.14 -1.98 -0.74 -0.23 -2.46 -0.22 -0.66 -0.62 -0.46 -0.3 -0.25 -0.64
Smo75684 (PACid_15414501)
-0.09 0.42 0.51 0.46 0.06 0.3 0.27 -0.08 -0.02 0.25 0.08 0.11 -0.45 0.49 1.62 0.11 0.49 0.18 -0.44 -2.16 -1.36 -3.22 0.42 -0.09 -0.88 -0.51 -1.5 -0.92 0.26 0.21 -0.83 -0.81
Smo77393 (PACid_15417979)
0.08 0.03 0.3 0.33 0.28 0.54 0.45 0.35 0.71 0.72 0.62 0.34 -0.33 0.69 1.23 -0.07 -0.39 -1.25 -1.31 -1.16 -3.61 -0.42 -0.58 -0.27 -0.84 0.0 -0.49 -0.26 -0.38 -0.29 -0.54 -0.78
Smo84320 (PACid_15416267)
-0.16 0.42 0.71 0.74 0.62 0.56 0.6 0.21 0.23 -0.06 0.05 -0.22 -0.15 1.49 1.19 -0.17 -0.36 -1.42 -1.63 0.76 -1.02 0.57 -2.06 -2.2 -4.13 -0.09 -0.11 0.12 -1.38 -1.18 -1.95 -2.43
Smo85326 (PACid_15419181)
-0.18 0.31 0.41 0.55 0.41 0.28 0.56 0.11 0.26 0.09 -0.02 -0.31 0.48 1.05 1.43 0.5 0.03 -0.32 -0.97 -0.26 -1.46 -0.92 -0.56 -0.47 -2.22 -0.87 -0.6 -0.44 -0.46 -0.3 -0.85 -0.62
Smo85880 (PACid_15423005)
0.39 0.26 0.03 -0.08 -0.32 -0.06 -0.07 -0.09 0.15 0.39 0.13 0.34 0.18 1.07 1.6 0.5 -0.16 -1.02 0.07 -0.81 -1.28 -2.15 -0.08 0.04 -0.25 -0.44 -0.54 -0.41 -0.41 -0.13 -0.99 -0.71
Smo86372 (PACid_15422074)
-0.03 -0.13 -0.11 0.09 0.09 0.1 0.13 0.17 0.38 0.28 0.25 0.28 0.14 0.55 1.19 -0.01 -0.18 -0.6 -0.31 -0.83 -1.01 -0.83 0.18 0.25 0.39 -0.72 -0.44 -0.46 -0.28 -0.19 -0.34 -0.28
Smo92008 (PACid_15415329)
0.43 0.54 0.36 0.33 0.29 0.58 0.36 0.19 0.2 0.37 0.16 0.16 -0.18 0.76 0.86 0.23 -0.14 -0.22 -0.45 -1.41 -2.49 -2.43 0.39 0.13 -2.68 -1.55 -0.65 -0.44 -0.26 0.03 -0.12 -0.04
Smo92161 (PACid_15416190)
-0.4 -0.17 0.1 0.09 -0.12 0.01 0.72 0.53 0.99 0.73 0.73 0.13 -0.24 0.1 1.83 -0.24 -0.04 -0.52 -1.65 -1.16 -1.9 0.46 -0.25 -0.06 -2.02 -0.64 -1.89 -1.25 -0.14 -0.08 -0.71 -0.81
Smo93209 (PACid_15419735)
0.01 0.3 0.31 0.32 0.37 0.46 0.43 0.13 0.5 0.39 0.33 0.09 -0.05 0.63 1.29 0.04 0.2 0.0 -0.48 -5.1 -3.79 -2.69 0.51 0.37 -2.65 -1.36 -0.71 -0.35 -0.07 0.02 -0.58 -0.47

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.