Heatmap: Cluster_229 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo432218 (PACid_15401998)
0.79 0.2 -2.76 -1.04 -0.99 1.18 1.48 1.4 1.93 0.28 -0.03 1.03 -1.02 - -1.72 -1.9 0.59 1.05 -0.15 -1.13 - -19.86 -1.48 -2.06 0.16 -0.18 -1.72 - 0.16 -0.0 -0.54 -0.89
Smo72234 (PACid_15402406)
-0.46 0.04 -1.2 -1.2 -0.95 0.99 1.13 1.3 1.72 0.48 0.58 1.97 -0.62 0.33 0.64 -2.28 -1.35 -0.38 0.11 -1.71 - - -0.53 -0.61 -1.9 -2.61 -2.31 - -0.05 0.18 0.0 -0.27

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.