Heatmap: Cluster_111 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - -1.6 -1.64 -1.6 - - - - - - - - - - - - - - 5.17 -2.42 - - - - - - - - 2.76 - - - - - - - -
-3.21 - - - - - - - - - - - - - - - - - - -2.75 -3.54 3.15 - - -2.07 3.18 -1.47 1.39 - -1.62 -0.3 - -1.36 - 3.06 3.4 - - -0.59 0.09 - - -3.57 -1.92
AT1G31740 (BGAL15)
- - - - - -2.23 - - - - - - - - - - - - - - - - - - - 5.32 -1.91 - - - - - - - - - 1.65 -1.0 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.46 - - - - - - - - - - - - - - - - - -
-5.49 -4.71 -6.3 -5.59 - -5.7 -3.38 0.16 0.81 0.72 -0.16 -7.07 -2.38 -0.99 -0.51 -4.65 -4.78 -6.1 - - 0.18 1.2 -8.12 - -5.5 3.34 -3.15 -3.26 - 3.53 1.16 -7.38 1.71 -2.13 -2.92 2.04 -6.63 -7.82 -2.14 -4.04 -3.99 -0.17 -2.25 -2.85
- - - - - - - - -0.8 2.44 - - - - - - - - - - -0.3 - 0.22 - - 4.15 0.35 - - 1.21 -4.01 - - - - 3.69 - - 0.77 - - - - -
- - - - - - - - - - - - - - - - - - - - -1.57 -0.32 - - - 4.27 -0.87 1.64 - - 2.35 - 1.06 - - 3.63 - - -1.75 - - - - -3.36
- 4.41 - - - - 0.47 - - - - - - - - - - - - - - - - - - - - - - - -2.61 - - - - - - - - - 2.84 3.53 1.28 -
AT1G48598 (CPuORF31)
-0.32 -0.71 -0.77 -0.11 1.39 -0.22 -0.17 -2.56 -1.92 -3.91 -1.81 - - -0.37 -2.19 0.77 0.28 0.61 1.37 0.62 -0.84 0.55 -0.08 -0.0 -1.1 3.15 -0.04 0.42 -0.17 0.18 -0.33 -2.2 -0.15 -0.07 -0.42 -2.9 -2.56 -4.09 0.33 -0.02 -1.68 -0.83 -0.18 -0.39
-2.13 1.17 -1.31 - - - - - - - - - - - - - - -6.16 - -4.23 4.41 -1.17 1.5 - - -0.9 -3.85 - -3.05 - -3.4 - -2.02 - -3.63 3.43 - - -4.23 -1.82 -1.03 - 0.48 1.21
- - - - - - - - - - - - - - - 1.43 1.52 2.86 - - - 2.39 - - - 2.59 -1.91 - - 3.35 -5.37 - - - -0.07 2.89 - - -1.66 - - - -0.48 -
- - 0.85 - - -1.69 - - - -2.25 -2.63 - - - - - - - - - 2.05 - - - - 4.15 -1.08 0.99 - - 1.72 - -0.5 1.08 - 0.93 -1.29 - 3.11 -2.95 - - - -
- -0.92 -1.86 1.37 - 0.14 - - -3.44 - - - - 0.53 1.5 -0.3 -1.68 2.9 1.82 -1.78 -2.13 - -2.95 -0.31 -0.13 -0.88 0.99 -1.79 - - -2.18 -0.95 - 1.55 1.95 1.75 0.54 - -3.13 0.31 0.33 0.78 -1.05 -0.55
-0.4 - - 3.01 - 2.08 - - - - - - - - -1.38 - - - - - -2.97 4.41 - - - 2.25 -0.7 - - 1.2 - - - -0.04 - - -1.95 - -1.68 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 3.12 - - - - - - - - - - - - - 5.14 - - - -
3.06 - - - - - - - - - - - - - -1.37 1.85 4.1 2.39 - - -1.34 - - - - - 2.54 - - - -1.83 - -3.27 - - -2.25 - - - - 0.97 - - -0.85
2.09 - - - - - -0.04 - -1.52 - - - - - - 0.79 -1.13 - - - - - -0.59 - - 2.89 0.62 - - 2.15 - 0.32 -1.6 - - 2.93 3.52 - - - -0.39 - - -0.48
- - - - - - - - - - - - - - - - - - - - - - - - - 3.07 -3.01 - - - - - - - - 5.12 - - - -0.72 - - - -
- 0.45 -1.49 - - - -1.88 - 0.86 -0.49 0.59 - - 0.16 -0.45 - - - -0.43 0.18 0.83 3.3 - - - 4.04 -1.37 -1.43 - 1.48 -2.41 - -2.43 - - - - - - - - - 1.13 -
- 0.45 - - - -1.19 - - - - - - - - - - - - - - - 0.6 - - - 5.29 - - - - - - - - -0.27 - - - - -0.23 - - - -
- - - 0.61 - - -1.47 - -2.89 - - - - -0.97 - - -2.43 -1.7 0.66 0.35 -2.17 - - - - 4.91 -0.31 -0.96 - - 0.85 - -2.01 - - 1.43 0.15 - -1.72 -1.76 - - - -
- - - - - - - - 0.88 - 0.88 - - - - - - - - - 1.52 - - - - 4.68 - - - - - - - - - 3.1 - - - - 1.74 - - -
- - - - - - - - -2.09 -2.95 -1.43 - - - - - - - - - -3.43 3.19 - - - 5.05 -5.83 - - - -7.38 - - - - -1.52 - - -4.55 -4.36 - - - -1.03
- - -3.52 -4.81 - - - -4.78 -4.53 -2.52 -3.24 -4.29 - - -1.6 - - -7.67 - -4.24 -1.59 0.82 - -5.45 -5.72 3.83 -1.99 -0.53 -4.06 2.95 -0.06 1.18 -0.71 1.56 -5.22 -0.68 2.35 1.14 -1.6 1.17 -1.65 - -5.64 -1.84
- - - - - - - - - - - - - - - - - - - - - 4.13 - - - 4.15 -4.2 - - 3.13 - - - - - - - - - - - - - -
- -2.26 -0.89 -2.55 - - - - -3.29 -0.6 1.04 - - - - -3.92 -5.6 -2.59 - -2.11 -3.59 - -4.13 - -3.62 5.23 -2.6 - - - -1.6 - -2.18 - -0.97 -1.62 - - - -2.97 -3.93 - -3.39 -2.34
- - - - - - - - - - - - - - - - - - - - - - - - - 4.32 - - - - - - - - - 4.59 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.92 - - - 5.11 - - - 2.49 - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.46 - - - - - - - - - - - - - - - - - -
-1.0 - - - - - -0.35 -1.69 -2.06 -2.32 -2.71 - - -2.67 -2.85 -1.41 -0.71 0.2 -1.69 0.44 -3.13 -0.07 2.5 -0.78 -2.17 - 2.21 3.24 0.83 - -0.1 - -0.21 -1.83 2.38 -0.06 - - 2.38 -0.77 - - -1.94 -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.93 - - - - - - - - - 3.72 - - -2.01 - - - - -
-1.6 -0.79 -2.19 -2.09 - -3.53 -4.17 -1.89 -3.37 -3.29 -4.25 - -1.27 - -0.37 -2.27 -4.22 -2.04 -1.63 - -0.56 0.46 0.92 1.82 1.11 2.01 1.0 2.46 -0.03 - 0.4 -1.5 0.04 1.6 - 2.78 - - 1.82 0.24 -2.51 - -2.33 -2.95
-4.43 -1.34 -1.49 -2.96 - - -3.42 -2.96 -4.68 -3.37 -3.47 - -0.82 -4.54 -0.11 -3.63 -3.74 -3.45 -3.54 -3.73 -0.38 2.7 -0.43 1.68 -0.91 1.48 1.13 1.82 -1.6 - -0.34 -3.76 -3.13 1.01 - 3.78 -5.01 - 1.29 -1.61 -3.01 -1.54 -3.79 -5.35
- - - - - - - 1.57 0.61 - - - - - - - - -0.17 2.25 1.81 1.49 - - - - 2.68 0.21 - - - 0.2 - - - - 1.24 - 1.69 - 1.4 2.35 - 2.0 0.61
- - - - - - - - - - - - - - - - - - - - - - - - - 5.46 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - 3.27 - - - 4.6 -4.52 - - 0.74 -5.07 - -1.4 - - 2.97 - - -2.45 - - - - -
AT4G13985 (FBD1)
- - - - - - - - - - - - - - - -0.57 0.84 0.94 - - 2.21 - - - - 4.07 -1.37 -0.11 - - 0.69 - -0.17 - 0.05 3.41 - - 1.45 - - - - -
AT4G16480 (INT4)
-1.89 -0.53 -2.19 -1.94 0.81 -4.71 -1.23 1.01 1.14 1.08 0.72 -0.63 -1.5 0.56 0.96 -0.02 -0.38 -0.21 -0.75 -0.93 1.01 0.59 -0.71 -1.54 -0.79 1.09 0.65 1.48 -1.5 -1.19 -0.64 -3.86 -0.52 -1.41 1.5 0.71 -4.13 -6.74 1.4 -1.91 -0.1 -1.7 -0.29 -0.76
0.22 -1.11 0.02 1.28 3.61 -2.32 -3.72 -4.76 -2.77 -1.32 -0.48 - - -0.36 -3.13 -2.76 -3.23 -3.23 -2.87 -2.62 0.74 3.42 -3.75 -3.83 -4.41 2.65 -1.83 -2.37 - 0.57 -2.5 - -3.25 -5.09 -2.91 0.44 - - -2.41 -1.64 -4.63 -5.08 -1.62 -3.69
- - - - - - - - - - - - - - 1.04 - - -1.16 - - - 2.82 - - - 3.77 2.32 - - 3.09 - - - - - 1.47 - - 2.17 - - - - -
-4.15 - - - - -4.42 -4.72 -4.53 -7.14 -6.96 - -4.12 - -5.19 -4.37 - -5.71 - -4.15 -3.9 -2.63 1.35 -2.11 -5.27 -3.62 3.9 -1.27 0.52 - 1.86 0.61 - -0.62 -3.77 -1.59 2.6 - - -0.09 -1.31 -3.05 -4.22 -3.88 3.3
- - -5.55 -2.1 - -3.78 -3.66 -4.64 -3.69 -2.31 -2.94 - - - -1.11 -4.54 -6.58 -1.74 -2.86 -5.92 -0.32 0.64 -2.56 -3.0 - -0.85 2.4 3.8 -3.95 - 0.45 -3.32 -1.87 -4.39 0.61 2.15 -4.36 -4.04 3.45 -1.84 - -1.32 -2.73 -3.86
-5.88 - -5.07 -5.36 - -4.78 -3.84 -5.12 -2.07 -2.49 -1.64 -2.9 0.41 -4.34 1.27 -5.22 -3.64 -2.67 -5.88 -6.38 -0.35 -1.2 -2.93 -3.23 -3.29 -1.87 2.04 3.48 -6.0 - 0.88 -2.03 -1.37 -3.61 -0.35 3.25 -1.5 -3.76 2.99 -2.84 -4.45 -3.94 -3.38 -2.96
-2.97 -3.19 -2.55 -3.49 - -3.89 -4.52 -4.75 - -4.17 -4.29 - - -4.07 -4.23 - -6.19 - -4.01 -2.26 -3.14 1.28 -3.06 -0.91 -0.05 4.12 -0.52 0.93 -0.28 2.39 1.29 -4.29 0.04 -1.59 -2.91 2.79 - - 0.69 -3.81 - - - -5.93
-0.26 -1.58 -1.03 1.54 - 0.56 -0.09 -1.44 0.29 0.33 0.05 -3.95 -4.38 -1.27 -1.17 -0.26 -0.03 0.73 1.42 1.15 0.74 0.45 0.07 -2.6 -0.96 -0.01 1.06 0.86 -0.29 - -0.99 -0.25 -0.54 -0.54 0.54 -0.34 0.0 0.09 0.07 0.87 -0.17 0.12 -0.73 -0.24
AT5G06070 (RAB)
-4.83 - -5.0 -4.35 - - - - - - - - - - -5.09 1.11 0.36 1.07 - - 0.97 0.19 -5.89 - - - 2.55 2.91 -4.99 - 0.24 -5.01 -2.97 - - -1.66 - - 4.29 -6.59 -5.72 -1.13 -3.18 -4.29
- - - - - - - - - - - - - - - - - - - - - - - - - 5.12 - - - - - - - - 1.5 0.32 - - - 2.35 - - - -
AT5G22900 (CHX3)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.31 - - - - - 2.1 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - 2.97 - - - - - - - 2.31 2.57 - - - - - - - - 4.66 - - - - - - - -
- - - - - - - - - - - - - - - - - 3.12 - - - - - - - - 2.0 - - - - - - - - 4.48 - - - - 3.17 - - -
AT5G37640 (UBQ9)
- - - - - - - - - - - - - - - - -0.63 - - - - 3.53 - - - 4.06 1.16 - - 3.61 -3.65 - - - - - - - -0.84 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 5.46 - - - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 1.9 -2.64 - - 5.33 - - - - - - - - - - - - - -
AT5G44640 (BGLU13)
0.17 0.94 -2.88 - - - - - - - - - - -1.73 - - - - -2.74 - -2.21 - - - - 1.04 -1.88 -1.74 - 4.9 1.07 - -1.46 0.51 -0.58 -0.43 - - 1.19 -2.82 - - - -
- - - - - - - - - - - - - - - - - - - - -1.54 2.43 - - - - 2.07 4.63 - - - - - - - - - - 3.2 - - - - -
- -2.16 - - - -1.83 -3.49 -4.63 - - - -0.36 - -2.03 -0.56 -4.65 - - - 0.66 -3.66 -0.42 -1.32 2.51 3.33 3.35 -0.35 0.55 1.03 - -4.46 - -5.01 - - 2.07 1.66 - -0.29 - -2.94 - - -2.27
- - - - - - - -0.17 - - - - - 1.45 - -0.19 - -0.88 3.03 - - - 0.47 - - - -1.31 - - 2.54 0.03 - - - 3.91 0.36 2.54 - - - - - - -
0.15 -1.78 - 0.9 - -0.23 -0.68 -3.29 -3.44 -0.86 -3.15 -0.28 - -2.66 -1.1 -0.7 -3.31 -0.69 1.0 0.24 0.71 -0.53 0.48 -0.72 0.4 0.08 1.25 2.17 1.57 - -0.5 - -2.33 - -2.49 3.27 - - 1.05 0.13 0.5 - - -0.83
AT5G61320 (CYP89A3)
- 0.08 - - - -2.55 - - -3.45 - -3.45 - - - - - - -1.77 - - - 3.82 - - -1.13 4.53 -2.08 - - - - - - - - 1.18 - - - 0.66 -1.81 - - -2.81
1.91 4.48 -1.97 - - - - - - -3.52 - - - - - - -3.41 -4.14 - - -4.59 2.45 - - - 0.98 -5.22 - - 2.69 -6.98 - - - - - -3.3 - - 1.24 -1.63 - - -0.48
0.5 2.22 - - - - - -4.63 1.28 1.57 1.21 - - - - - - -3.78 - - - - - - - 4.13 -0.35 - - - -2.8 - -2.28 2.56 - -1.59 - - -4.94 -0.89 -3.35 - 0.35 1.72

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.