Heatmap: Cluster_173 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo125145 (PACid_15404561)
0.25 -0.64 0.19 0.68 0.2 -0.61 0.26 0.63 0.07 -0.1 -0.39 0.08 0.45 1.62 0.87 2.91 -4.36 -3.67 0.08 - - - - -1.54 1.05 - -0.48 -1.86 -3.5 -1.75 -5.76 -1.65
Smo130484 (PACid_15421884)
-4.96 -3.15 -3.03 -3.68 -3.69 -3.99 -2.88 -3.36 -4.01 -5.6 -4.64 -3.93 -1.09 -1.22 -6.51 2.75 -2.51 0.8 1.4 -4.57 -1.54 -3.21 -4.23 -0.69 -3.0 2.17 2.21 0.48 0.05 -0.21 1.56 1.16
Smo139875 (PACid_15406621)
-2.34 -2.49 -2.05 -2.59 -1.67 -1.99 -1.5 -1.2 -1.44 -1.94 -1.9 -2.51 -0.94 0.79 -0.73 1.34 -1.87 0.27 0.81 -1.82 -0.72 -0.77 -1.15 0.53 -1.44 1.19 1.98 1.18 -0.11 0.0 0.24 2.27
Smo141212 (PACid_15407957)
-3.54 -3.08 -3.97 -4.22 -1.69 -3.44 -3.05 -2.08 -3.05 -3.29 -3.7 -2.95 -0.98 2.17 -0.34 1.76 -1.78 0.17 2.04 -1.19 -4.62 -1.7 -2.24 0.72 -2.15 -1.42 2.02 -0.96 0.23 -0.16 0.12 2.27
Smo145836 (PACid_15402063)
-0.98 -0.68 -0.88 -1.16 -0.58 -1.13 -0.91 -0.75 -0.32 -0.86 -0.45 -0.64 -1.67 0.01 -9.32 2.64 0.05 -0.5 1.57 - - - -1.14 0.87 -3.6 0.89 0.66 -0.52 0.33 0.91 -0.57 1.22
Smo148419 (PACid_15407635)
0.34 -0.16 -0.75 -1.01 -0.79 -1.11 -0.72 -0.74 -0.65 -0.77 -0.52 -0.24 0.5 1.03 -1.24 1.68 -0.68 0.33 1.55 -2.48 -0.61 -7.71 -0.77 0.11 -1.8 0.77 0.47 0.04 0.5 0.65 -0.02 -0.03
Smo158994 (PACid_15419003)
-3.75 -3.59 -3.8 -3.32 -3.06 -2.62 -2.85 -3.13 -3.19 -3.96 -3.83 -3.44 0.07 1.04 0.05 2.69 -1.72 2.37 1.48 -0.08 -0.98 -5.48 -2.06 0.14 -3.18 -0.76 1.35 -0.64 0.21 0.29 -0.1 0.94
Smo1612 (PACid_15408440)
-1.09 -0.17 0.12 -1.02 -1.89 -1.0 -2.05 -0.13 -1.13 -0.45 -0.79 -0.3 0.92 1.05 -4.43 0.39 -2.28 -1.15 2.78 0.74 -0.09 - -3.12 -2.37 -1.65 1.33 1.53 1.11 -1.15 -2.33 -2.7 -3.18
Smo161673 (PACid_15403273)
-1.28 -1.48 -1.29 -1.09 -0.94 -1.16 -1.23 -0.87 -0.78 -1.14 -0.95 -1.06 0.32 0.39 -1.25 1.29 -1.17 -0.28 2.04 -0.81 -0.43 -0.44 -0.69 0.18 -0.43 1.02 0.59 -0.43 -0.02 0.07 0.91 1.5
Smo163927 (PACid_15411424)
-0.73 -0.94 -0.98 -0.85 -0.87 -0.85 -0.61 -0.54 -0.35 -0.49 -0.15 -0.45 0.39 0.11 -0.2 0.77 -0.6 -0.23 1.52 0.46 -0.65 -0.18 -0.3 0.22 -0.22 0.6 -0.06 -0.99 -0.11 -0.09 0.77 1.38
Smo167445 (PACid_15419301)
-1.82 -1.6 -2.12 -1.83 -2.11 -2.04 -2.13 -2.18 -2.16 -2.7 -2.78 -2.47 -0.64 -1.39 -4.4 1.94 -1.64 0.02 2.58 -5.39 -1.75 - -1.11 0.56 -0.36 1.06 0.97 -0.35 -0.19 0.03 1.14 2.34
Smo167621 (PACid_15420755)
-1.8 -1.98 -1.99 -2.06 -2.02 -1.96 -2.01 -1.68 -2.0 -1.73 -1.59 -1.76 0.69 1.17 0.89 2.05 -2.6 -0.35 1.64 0.25 0.69 -2.58 -2.02 -0.12 -1.3 0.44 0.19 -1.19 -0.89 -0.69 1.33 1.86
Smo168278 (PACid_15420742)
-2.4 -1.33 -2.43 -1.76 -1.42 -1.9 -1.51 -0.01 -0.51 0.0 -0.62 -0.78 2.7 -0.82 -1.27 3.51 -1.03 -0.33 0.14 -9.7 -1.59 -7.2 -2.07 -1.15 -3.53 -0.14 -2.15 -2.39 -0.36 -0.51 -1.41 -1.13
Smo177296 (PACid_15402674)
-1.14 -1.93 -1.56 -1.84 -0.79 -1.5 -1.36 -0.71 -0.73 -0.39 -0.69 -0.87 -1.17 0.25 -0.97 1.73 -2.0 -1.09 1.18 -0.11 -0.4 -0.43 -2.61 -0.32 -0.48 1.59 1.94 0.83 -0.15 0.15 0.41 0.73
Smo228207 (PACid_15406033)
-3.4 -3.43 -3.15 -3.27 -2.26 -3.43 -3.14 -2.42 -2.57 -3.03 -2.37 -2.89 1.22 0.01 -2.04 1.94 -3.29 0.75 1.96 0.75 2.04 -0.32 -2.84 -0.87 -2.49 -0.1 1.21 -1.13 -0.26 -0.31 1.02 1.28
Smo23403 (PACid_15415572)
-1.52 0.54 -1.44 -1.25 - -0.61 -0.78 -2.76 -1.97 -1.26 -1.89 0.16 1.79 - -1.58 3.31 -0.2 -0.59 2.25 - - - - -0.08 -0.54 -1.4 -1.35 - -1.13 1.13 -0.37 -2.66
Smo235544 (PACid_15406832)
- - - - - - - - - - - - 0.55 - 2.7 3.97 - 1.05 - - - - - - - - - - 0.26 1.4 - 1.29
Smo26454 (PACid_15402049)
-0.42 0.81 -0.57 0.24 -2.06 -0.4 -0.07 0.51 0.21 -0.97 -0.2 -0.89 1.72 0.72 1.63 1.23 -0.52 -0.56 2.11 -2.24 -3.1 - -1.71 -0.91 -2.38 -1.74 -2.22 -0.62 -0.17 -0.22 -1.24 -1.3
Smo267743 (PACid_15413593)
0.33 -0.01 -1.06 -0.5 -0.41 -0.84 -0.76 -0.34 -0.38 -0.42 -0.09 -0.06 0.41 1.25 -0.1 1.43 -1.06 -0.36 1.31 - -3.14 -2.36 -0.25 -0.13 -0.92 1.1 0.96 0.51 -0.44 -0.38 -0.31 -0.05
Smo402549 (PACid_15405014)
-1.4 -1.97 -1.72 -2.17 -0.92 -2.02 -2.02 -2.33 -2.04 -1.97 -2.18 -2.63 -1.58 0.43 -1.07 1.69 -2.38 0.94 1.7 -0.46 -1.14 -0.92 -3.25 0.02 -2.76 2.24 2.32 0.53 -0.2 -0.41 -0.78 0.75
Smo404365 (PACid_15409463)
- - - - - - - - - - - - 3.93 - - 4.07 - - - - - - - - - - - - - - - -
Smo404972 (PACid_15414176)
- - - - - - - - - - - - - - - 1.85 - 2.2 1.55 - - - 3.26 1.47 - - - - 1.55 - 1.51 1.45
Smo406380 (PACid_15415440)
-2.33 -1.5 0.43 -0.59 -1.2 -0.27 -3.0 -2.04 -4.76 -5.64 -3.16 -4.71 0.97 -0.03 -4.66 2.13 -1.92 1.52 2.85 - - - -0.8 0.18 -1.05 -0.81 1.2 1.41 -0.91 -0.85 -1.11 -0.64
Smo407590 (PACid_15419831)
-4.04 -1.3 -2.5 -2.01 - -2.46 -2.29 - -4.19 -3.43 -2.45 -3.28 -2.57 -1.28 -0.03 2.79 -4.12 1.33 2.75 - 1.0 - -2.66 -0.12 -2.05 -2.1 -0.57 -0.29 -0.26 0.3 0.46 2.0
Smo407867 (PACid_15421965)
0.53 -1.43 -0.54 -0.82 -0.85 -2.07 -1.52 -0.89 -2.73 -1.05 -0.85 -0.14 0.45 1.35 -1.17 1.85 -0.67 -0.76 2.32 -3.33 - - -1.46 -1.1 - 1.58 1.18 0.04 -0.05 0.05 -0.3 -0.07
Smo408999 (PACid_15403402)
0.65 -0.4 -0.26 -0.47 0.13 -0.7 -0.45 0.01 -0.25 -0.16 -0.35 0.31 -0.77 -2.42 -2.13 2.59 0.58 0.64 1.38 -1.18 - - -0.48 0.68 -1.37 -0.92 -1.65 -1.0 0.28 0.83 -1.18 -1.73
Smo409155 (PACid_15422457)
-0.42 -0.57 -0.63 -0.46 -0.6 -0.37 -0.28 -0.44 -0.2 -0.14 -0.06 -0.35 0.22 0.59 -0.79 1.62 -0.03 -1.09 0.52 -3.31 -0.83 -1.75 -0.63 -0.46 -1.33 0.57 0.95 0.9 -0.4 -0.3 0.92 1.0
Smo410535 (PACid_15406391)
-0.16 -0.92 0.44 0.37 -1.13 0.46 0.27 -2.58 0.16 -1.9 -0.26 0.23 0.91 -2.43 -0.71 3.4 -1.74 -2.86 -0.42 -1.61 -0.93 -0.97 -0.48 -0.11 -0.21 -2.28 -0.85 -2.71 -2.37 -0.74 -0.85 -0.33
Smo411496 (PACid_15408676)
- - - - - - - - - - - - - - - 5.0 - - - - - - - - - - - - - - - -
Smo411685 (PACid_15410280)
-3.11 -2.93 -1.1 -0.4 -1.04 -1.43 -3.27 -1.79 -1.72 -1.83 - -1.11 -0.78 -0.4 -1.44 2.33 -3.28 -0.94 2.48 - 0.08 - -0.64 0.36 1.4 0.43 - - 0.47 0.44 1.6 1.34
Smo413873 (PACid_15417609)
- - - - - - - - - - - - - 3.12 - 4.29 - - - - - - 1.92 - - - - - - - - -
Smo417670 (PACid_15405329)
- - - - - - - - - - - - - - - 4.12 - 3.87 - - - - - - - - - - - - - -
Smo417799 (PACid_15406203)
-0.69 - - - -0.62 -0.33 - - -0.18 0.67 - - 0.69 1.76 - 3.25 -1.55 - 1.8 - 0.65 - 0.02 - - 1.78 1.65 - - - - -
Smo418718 (PACid_15408934)
- - - - - - - - - - - - 2.23 - 2.2 2.99 - - 3.67 - - - - 1.02 - - - - - - - -
Smo418971 (PACid_15410686)
-0.1 -0.14 -0.2 -0.28 0.01 -1.41 -0.46 -0.87 -0.02 -0.44 -0.06 -0.33 1.0 0.39 -1.33 1.61 0.28 0.21 0.83 -3.21 -1.8 -0.32 -0.03 0.07 -2.18 -1.78 -1.63 -1.72 0.52 0.51 1.44 0.58
Smo419220 (PACid_15407985)
- - - - - - - - 0.76 - - 1.62 0.96 - 2.36 2.73 - 1.51 3.42 - - - - - - - - - - - - -
Smo420289 (PACid_15411492)
-2.2 - -3.62 -2.01 -1.07 -0.4 -3.39 -0.27 - - - -3.37 -0.05 0.31 -0.21 1.79 -0.61 0.24 1.81 0.42 -0.95 1.34 -2.25 -1.23 1.13 0.38 -0.57 - 1.17 1.39 0.22 1.08
Smo420502 (PACid_15413601)
0.35 - - 1.72 - 0.06 - - -0.23 - 0.27 - - - - 2.3 -0.65 -0.12 3.58 - - - - 0.19 - - - - 0.76 -0.42 0.29 0.13
Smo420684 (PACid_15414622)
-4.43 -4.11 -3.67 -3.73 -3.07 -3.06 -2.91 -3.2 -3.44 -2.97 -2.8 -3.57 0.47 0.64 -0.46 2.57 -2.0 0.71 1.8 -2.78 1.75 -0.06 -3.02 0.2 -2.24 0.92 0.72 -0.72 0.18 0.04 0.36 1.2
Smo423292 (PACid_15420233)
0.01 -0.23 0.27 0.08 -0.26 0.05 0.9 0.84 1.14 0.27 0.51 0.43 1.0 0.06 -1.15 2.52 -2.2 -0.87 -2.69 - -3.55 - 0.42 0.38 0.02 -3.79 -1.19 -1.3 -1.63 -0.6 -2.72 -2.05
Smo423500 (PACid_15422209)
-2.16 - - - 1.82 - - -1.04 - 1.35 - - 0.33 2.42 1.9 3.43 - - -0.98 - 1.05 - - -0.97 - - - - -0.98 -0.97 - -
Smo423528 (PACid_15422273)
- -0.5 - - - - - - - 1.6 0.47 - 2.13 0.63 -0.52 2.63 0.74 - 2.11 - - - 0.82 0.74 - - 1.13 - 0.65 - -0.21 -
Smo426299 (PACid_15406642)
-1.69 -1.55 -1.33 -1.27 -0.79 -0.87 -0.84 -0.73 -0.63 -1.25 -1.23 -1.74 1.29 1.14 1.07 1.93 -1.78 -0.52 0.65 0.15 -0.74 -0.74 -0.42 0.37 -0.74 0.95 0.88 0.58 -0.7 -0.32 -0.64 0.09
Smo428742 (PACid_15416264)
- - - - - - - - - - - - - - - - - 2.89 3.24 - - - 3.37 - - - - - - 2.24 - -
Smo431003 (PACid_15419848)
- - - - - - - - - - - - - - - 4.08 - - - - - - 3.91 - - - - - - - - -
Smo432136 (PACid_15423512)
- - - - - - - 1.25 - - - - - - - 4.01 - 2.81 - - - - - - - - - - 1.71 - 1.67 -
Smo437314 (PACid_15417395)
-0.42 -0.89 -1.53 -1.74 -2.09 -2.34 -1.5 -0.84 -0.53 -0.16 -0.38 0.08 -0.08 1.23 -2.37 0.92 -1.95 0.85 0.9 -0.01 0.71 -1.91 -0.43 0.23 -0.87 0.99 -0.6 -1.35 0.19 0.83 1.13 1.33
Smo437726 (PACid_15420502)
-4.47 -4.86 -4.72 -3.97 -4.94 -4.06 -3.56 -3.89 -3.74 -4.28 -3.96 -5.6 -5.92 -6.06 -5.25 3.15 -2.3 -0.83 3.83 0.72 - 0.04 -4.54 0.64 -2.67 -4.66 -1.39 -1.61 -0.39 -0.39 -1.93 -1.21
Smo438745 (PACid_15423334)
-1.01 -1.23 -0.71 -0.67 -0.64 -0.86 -0.45 0.17 0.1 -0.54 -1.01 -1.08 -0.24 2.17 -4.59 2.23 -2.49 -1.24 2.1 -7.47 -1.1 -7.11 -2.49 -1.04 -0.3 1.45 1.03 -0.76 -0.76 -0.8 -1.3 -2.27
Smo440007 (PACid_15401786)
-1.71 -1.64 -2.41 -2.79 -3.59 -3.27 -2.23 -2.19 -1.92 -1.44 -1.61 -1.42 0.56 1.01 -1.26 1.65 -2.01 1.07 1.45 -0.27 0.84 -1.31 -0.2 0.86 -0.39 0.74 -0.42 -1.44 0.38 1.18 0.8 1.26
Smo440311 (PACid_15404010)
-0.48 -0.48 -1.2 -0.98 -0.86 -0.45 -0.59 -0.88 -0.73 -0.52 -0.71 -0.23 -0.8 0.63 -0.16 1.24 -1.21 0.78 1.65 -0.12 1.29 -0.49 -1.41 -0.08 0.34 0.23 -0.37 -0.91 0.1 0.32 -0.02 0.34
Smo442734 (PACid_15413141)
-3.24 -2.89 -3.32 -3.41 -2.96 -3.25 -1.34 -2.6 -2.16 -2.85 -3.0 -3.0 -0.26 1.31 0.45 1.59 -2.58 0.49 1.68 -1.49 0.35 -3.12 -1.76 -1.14 -1.59 0.19 0.08 -1.33 0.99 1.99 1.85 1.44
Smo446994 (PACid_15404007)
-3.94 -4.86 -3.98 -4.28 -3.12 -3.38 -3.68 -3.22 -4.85 -4.89 -4.48 -4.67 1.19 1.54 -1.23 3.73 -5.02 0.14 -1.88 -3.6 -4.94 - -4.83 -0.84 -6.1 -0.81 2.64 0.45 -1.1 -0.93 -1.14 -0.8
Smo448393 (PACid_15405294)
-2.73 -1.97 -2.24 -2.37 -2.12 -2.54 -2.34 -2.53 -2.11 -2.46 -2.45 -2.58 0.72 -2.12 -2.12 3.27 -0.95 -0.46 1.71 -0.83 -0.73 -4.72 0.03 1.08 -0.99 -0.11 0.1 -0.99 0.36 0.58 0.75 0.66
Smo59613 (PACid_15411593)
- - - - - - - - - - - - 2.36 - - 2.96 0.89 - 2.74 - - - 0.67 1.76 - - - - 0.92 0.85 0.91 -
Smo64232 (PACid_15423321)
-0.15 -0.57 -0.14 -0.43 -0.05 -0.04 -0.18 -0.33 -0.34 -0.38 -0.32 -0.71 0.39 0.46 -0.13 1.1 -0.17 -0.21 1.33 -3.01 -0.32 -1.21 -0.43 -0.25 -0.52 0.01 0.65 -0.46 0.13 0.27 0.6 0.5
Smo70937 (PACid_15401968)
-0.21 -2.11 -2.46 -1.21 -0.48 -0.92 -0.38 -0.38 0.0 0.26 0.74 0.1 -0.32 -0.28 -1.94 0.45 -1.9 -0.89 2.1 - - - 0.18 0.47 -3.69 0.48 -0.11 -0.93 0.47 0.41 1.32 1.84
Smo72858 (PACid_15407001)
- - - - - - - - -0.85 0.72 0.38 - 0.21 2.32 0.83 4.1 - - - - - - - - - - - 1.77 - - - -
Smo73148 (PACid_15404529)
- - - - - - - - - - - - 1.27 - - 2.8 -0.8 1.93 1.54 - - - - -0.88 - - - - 1.01 -0.64 2.85 2.3
Smo73442 (PACid_15406869)
-1.47 -1.06 -1.41 -0.59 -3.3 -0.76 -0.85 -1.9 -1.49 -0.72 -1.06 -1.12 0.98 0.1 0.03 2.45 -1.41 1.19 2.05 -2.38 -2.07 - -0.99 -0.02 -1.15 0.47 1.63 -0.69 -0.17 -0.36 -1.11 -0.36
Smo74786 (PACid_15412273)
-1.05 0.68 - -0.96 - -2.01 0.68 - - 0.07 - -0.47 - -2.11 - -0.95 - 0.7 3.14 - - - - -0.54 0.73 0.6 -0.55 - 0.42 -0.09 0.69 2.62
Smo79549 (PACid_15402854)
-1.85 -2.12 -2.45 -2.17 -1.73 -1.71 -1.35 -0.88 -0.71 -0.81 -1.16 -1.23 1.18 1.39 -0.03 2.22 -2.39 -0.2 0.45 0.7 1.03 -2.55 -1.59 -0.42 -1.22 0.87 0.59 -1.4 -0.44 -0.52 0.87 1.15
Smo85398 (PACid_15419338)
0.61 0.52 0.21 -0.14 -0.24 -0.73 -0.37 -0.54 -0.12 0.09 -0.15 0.21 0.03 0.96 -0.47 0.85 -2.04 -0.98 1.91 -0.3 -0.7 -5.65 -2.76 -2.4 -1.72 1.27 1.38 0.19 -1.26 -0.95 -1.36 -1.15
Smo88587 (PACid_15407174)
- - -1.15 -3.51 - - - - -4.08 - - - -0.23 - -3.57 4.42 - -1.29 - - - - - - - - - - 1.43 0.38 -1.99 2.15
Smo88870 (PACid_15409556)
-3.99 -3.16 -3.98 -3.33 -1.8 -5.26 -2.9 -3.82 -4.11 -4.08 -3.96 -3.48 -1.58 -0.5 -2.59 1.63 -1.54 1.57 2.21 -0.36 1.89 -1.32 -2.78 -0.41 -0.38 -0.72 -0.65 -1.86 0.61 0.7 1.08 2.41
Smo92401 (PACid_15418338)
-1.23 -1.14 -1.24 -1.65 -1.47 -1.43 -1.56 -1.48 -1.5 -1.76 -1.55 -1.49 0.42 0.82 -0.23 2.41 -0.46 0.48 1.74 -1.56 -3.2 -2.27 0.21 1.24 0.31 0.64 -0.04 -0.78 0.15 0.27 -0.09 0.11
Smo97195 (PACid_15408463)
- - - - - - - - - - - - - - - 1.22 - 3.42 - - - - 3.07 - - - - - 1.16 1.08 - 2.64
Smo97357 (PACid_15409984)
-0.94 -1.16 -1.72 -2.06 -1.41 -1.39 -1.21 -0.38 -2.31 -1.18 -0.27 -2.12 -0.91 -0.13 -0.39 2.34 -0.45 -0.9 1.56 - - -1.63 1.41 1.83 -1.13 -1.38 -2.45 -0.54 1.92 0.95 -0.61 -0.53
Smo99671 (PACid_15418149)
- - - - - - - - - - - - 2.3 - - 2.44 1.28 - 0.63 - - - 0.69 1.13 - - - - 0.82 2.58 2.41 -0.25

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.