Heatmap: Cluster_349 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo416432 (PACid_15423101)
-1.29 - -1.3 -0.67 -3.35 1.21 -0.06 0.35 0.09 0.7 0.41 0.49 - - -1.72 -3.22 -0.34 0.54 -1.38 -0.46 0.06 0.35 -0.56 -1.03 0.71 -0.61 1.41 2.32 -0.35 0.36 -0.55 -0.83
Smo91529 (PACid_15416232)
-0.64 -1.69 -1.46 -2.16 -1.59 1.24 -0.25 0.28 -0.9 1.21 0.22 0.02 -1.25 - -1.26 - -2.37 0.28 -2.37 -0.05 1.58 - -1.61 -1.21 1.23 0.85 1.4 2.28 -1.27 -2.3 -0.36 -1.04

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.