Heatmap: Cluster_245 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101524 (PACid_15403794)
- - - - - - - - 1.1 - - - - - 2.2 1.48 - - 4.34 - - - - - - - - - - - 1.15 -
Smo419213 (PACid_15407960)
- 1.56 - - - - - 0.58 - - - - - - 1.75 - - - 4.34 - - - - - - - 1.96 - - - - -
Smo420616 (PACid_15414423)
-2.42 - 0.98 -3.43 - -2.01 1.25 0.51 -1.59 -1.33 - - - - 2.06 -2.67 1.42 - 3.85 - - - - - - -2.54 -1.83 -1.37 -2.72 0.45 - 0.31
Smo424564 (PACid_15402981)
-2.5 -2.23 -3.51 -1.27 - -2.01 -0.42 0.05 -1.31 -1.9 -0.35 -3.31 0.38 1.2 1.48 0.48 -0.7 -0.02 3.5 - - - -0.65 -1.14 -1.03 1.14 - 0.15 -1.56 -2.06 -0.51 -0.58
Smo4917 (PACid_15419578)
- -0.51 - - - - - -1.6 - -0.55 - -0.45 0.74 0.3 2.1 0.35 -1.39 - 4.16 - - - -1.25 - - -0.28 - - -0.34 -0.36 - -
Smo68079 (PACid_15411422)
- - - - - - - - - - - - - - 2.39 - - - 4.74 - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.