Heatmap: Cluster_81 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101213 (PACid_15401578)
-1.98 -2.37 -3.18 -2.52 -2.36 -1.96 -4.68 -2.43 -2.12 -3.27 -3.04 -3.12 3.56 -0.82 -2.99 4.03 -6.26 - -0.43 - - - - -2.9 - -2.74 -6.17 -4.15 -7.48 -3.74 -7.37 -5.86
Smo107796 (PACid_15423052)
-1.28 0.44 - - - - - - -2.3 - - - 3.87 1.61 -2.62 3.54 - - -0.92 - - - - - - - - - - - - -
Smo111723 (PACid_15412678)
-1.67 -3.53 -3.96 -1.89 -2.19 -2.42 -2.73 -2.46 -2.07 -1.78 -1.51 -1.86 3.24 0.8 1.25 3.68 -7.22 -3.71 -2.7 -6.32 -0.17 -4.37 -4.38 -3.69 -2.0 -1.44 -1.73 -1.3 -3.69 -2.89 -3.69 -3.77
Smo111866 (PACid_15413564)
-2.78 -2.76 -3.72 -2.87 -2.32 -2.86 -2.95 -2.32 -2.1 -2.65 -2.31 -2.39 3.51 0.66 1.23 3.63 -4.63 -5.36 -3.3 -6.28 -3.12 -2.52 -5.24 -4.07 -1.5 -1.4 -1.79 -0.95 -3.8 -3.52 -4.71 -4.08
Smo112151 (PACid_15411136)
-0.51 -0.56 -0.71 -0.45 -0.52 -0.51 -1.26 -1.16 -1.0 -0.89 -0.66 -0.9 2.72 0.97 -1.37 2.92 -1.61 -3.93 -0.14 - -3.95 -7.01 -1.16 -0.05 -1.62 0.1 0.21 0.91 -1.57 -1.23 -2.78 -2.31
Smo113945 (PACid_15420087)
-1.22 -2.15 -0.17 -0.15 -0.77 -0.97 -0.72 -1.34 -1.65 -0.96 -1.22 -1.3 2.78 0.76 1.07 2.13 0.1 -0.8 0.07 -2.19 -0.95 0.03 -0.47 0.22 -4.78 -0.25 -0.82 -0.7 -0.46 -0.35 -1.18 -1.28
Smo122318 (PACid_15419710)
0.0 -0.27 -1.24 -0.91 -0.31 -0.25 -0.5 -0.06 -0.11 -0.31 0.11 -0.07 2.6 0.28 -1.31 2.2 -2.41 -2.96 -1.79 -0.54 - -0.16 -0.94 -0.37 -1.05 0.97 0.34 0.16 -1.59 -1.41 -1.35 -1.11
Smo131152 (PACid_15422452)
-0.24 -0.37 -0.39 -0.46 -0.2 -0.61 -0.88 -0.37 -0.19 -0.04 -0.2 -0.28 2.48 1.2 -0.43 2.33 -3.26 -2.27 -0.57 - -8.88 - -0.04 0.86 -1.78 0.66 -0.5 -0.72 -0.98 -0.73 -1.4 -1.36
Smo134279 (PACid_15409784)
-0.75 -0.27 -0.94 -0.88 -0.39 -0.31 -1.43 -0.9 -1.16 0.16 -0.92 -1.3 2.63 0.92 -2.37 2.33 -0.42 -0.77 0.85 -6.04 -2.62 -5.55 1.01 0.38 -0.97 -1.19 -0.54 -0.34 -0.68 -0.21 -2.5 -1.16
Smo137631 (PACid_15421400)
-1.38 - -3.3 - - - -1.47 -3.29 -2.97 - -2.59 - 3.61 1.1 -2.01 3.2 -0.35 -0.81 1.08 - - - -2.21 -1.87 - - -1.47 - -0.79 0.53 -1.58 -1.64
Smo138198 (PACid_15420748)
-2.94 -5.15 -6.16 -3.23 -6.27 -4.45 -3.66 -3.06 -3.68 -2.75 -5.62 -2.54 3.52 -0.47 1.84 3.08 -2.13 -2.17 -0.01 - - - -1.18 -1.73 - 1.65 -1.91 -3.09 -1.07 -1.35 -3.33 -2.73
Smo140615 (PACid_15408107)
-0.87 -0.36 -0.47 -0.45 -0.14 -0.62 -0.67 -0.56 -0.62 -0.81 -1.06 -1.23 2.33 0.13 -3.49 1.57 0.08 0.74 1.1 -3.92 -0.49 -4.26 0.63 0.6 -0.4 -0.3 -0.36 -0.08 -0.32 -0.17 -0.81 -0.45
Smo230611 (PACid_15415378)
-0.08 -0.15 -0.12 0.05 0.03 0.05 -0.05 -0.03 0.16 0.14 0.26 -0.13 2.61 0.1 0.42 1.24 -0.27 -1.24 -0.21 -1.51 -3.39 -1.95 -1.29 -1.99 -1.38 0.17 -0.07 0.26 -0.92 -0.44 -1.66 -1.86
Smo231160 (PACid_15414629)
-0.84 -0.57 -0.16 0.05 0.06 -0.17 -0.16 -0.11 -0.13 0.01 -0.23 -0.64 2.11 0.73 -1.65 2.17 -0.73 -1.65 0.11 -2.92 -2.5 -3.46 0.49 0.93 -1.84 0.01 -0.22 -0.11 -0.49 -0.47 -1.55 -1.62
Smo231359 (PACid_15416074)
-0.81 -0.61 -0.24 -0.02 0.01 0.06 0.15 0.37 0.3 0.4 0.24 -0.15 2.87 0.96 -1.19 1.59 -1.61 -1.85 -0.36 -5.47 -8.73 -5.3 0.47 0.34 -3.56 -0.76 -1.2 -0.76 -1.22 -0.79 -2.47 -2.42
Smo231472 (PACid_15416848)
-1.16 -1.21 -0.97 -0.81 -0.52 -0.73 -0.66 -0.49 -0.6 -0.93 -0.96 -1.37 2.98 0.64 -1.57 1.72 -1.38 -1.55 -0.07 -1.42 -1.7 -4.64 0.61 1.76 -0.92 0.51 -0.78 -0.51 -0.97 -0.37 -2.08 -2.57
Smo402734 (PACid_15406544)
-0.13 -0.64 -1.08 -0.95 -0.74 -0.36 -2.37 -0.56 -0.7 -0.73 -0.42 -0.97 2.57 0.26 -2.43 2.93 -2.59 -2.83 -1.21 - - - -0.52 -0.56 -0.88 0.61 1.26 1.03 -1.26 -1.52 -3.42 -1.93
Smo402994 (PACid_15408188)
- - - - - - - - - - - - 3.9 - - 4.01 - - -1.94 - - - - -2.77 -3.75 -4.13 - - -3.92 -2.53 -4.12 -2.77
Smo403872 (PACid_15410441)
-3.78 -3.47 -3.09 -2.86 - - -2.09 - -1.47 -4.65 -1.29 -2.78 3.58 0.82 0.02 3.43 - - -1.48 0.62 - - -4.34 -2.29 0.32 -0.88 -3.03 - -1.37 -1.68 -4.3 -3.36
Smo405588 (PACid_15414083)
-0.46 -0.84 -0.71 -0.57 0.28 0.11 0.37 0.56 0.32 0.33 -0.2 -0.15 2.63 -0.79 0.16 2.38 -1.75 -1.68 -0.73 -8.05 -3.48 -2.84 -1.83 -1.61 -2.84 -0.41 -0.03 -0.09 -1.08 -0.98 -0.92 -0.66
Smo409456 (PACid_15402448)
-1.07 -0.79 -0.73 -1.07 -0.73 -0.65 -1.12 -1.4 -1.07 -0.64 -1.09 -1.11 2.86 0.94 -3.9 2.36 -0.66 -0.74 0.05 -1.19 -0.67 -4.36 1.33 0.75 -1.26 -3.2 -2.97 -1.67 -0.08 -0.2 -1.04 -0.9
Smo409522 (PACid_15403105)
-1.15 -0.95 -1.73 -2.01 -1.45 -2.14 -2.13 -1.44 -1.88 -1.68 -1.79 -1.97 3.45 1.63 -2.62 3.07 -2.94 -3.18 1.08 -3.8 -6.35 - -4.0 -1.93 -0.65 -0.82 -1.59 -1.53 -2.14 -1.83 -1.96 -2.25
Smo409934 (PACid_15406245)
-0.69 -1.45 -0.43 -0.93 -2.23 -0.05 -1.09 -0.17 -0.41 -0.21 -0.22 -0.75 2.87 -1.52 -1.77 2.35 -1.21 -0.02 -0.94 -4.29 -2.41 -1.89 0.44 1.32 -1.43 -2.04 -0.75 -1.52 -0.53 -0.45 -0.03 -0.26
Smo412663 (PACid_15413173)
-3.85 - - -0.97 - - - - - - - - 3.62 -1.16 1.44 2.39 -2.27 -1.18 1.18 - - - 0.52 -1.4 - -1.35 -0.03 - -2.37 -0.06 0.4 1.11
Smo413463 (PACid_15414617)
-1.59 -1.66 -1.32 -3.03 0.8 -1.62 -2.65 -0.03 -2.9 - -1.74 -1.61 3.43 0.3 0.4 2.16 -1.45 -0.17 1.99 - - - 0.41 -0.59 - - - - -2.54 0.25 -2.59 -1.65
Smo414697 (PACid_15419089)
-3.18 - -3.91 -2.25 -3.36 - -1.28 - - -3.88 - - 3.75 0.82 -1.61 3.56 - -3.39 -1.16 - - - -3.54 -2.49 - -0.15 -1.26 0.33 -2.53 -3.48 - -
Smo416118 (PACid_15420866)
-1.8 -1.06 -0.49 -0.79 -0.71 -0.81 -0.16 -0.41 -0.17 -0.21 -0.47 -1.15 3.11 1.68 -3.8 2.02 -1.62 -1.69 -1.54 -3.48 -2.0 -4.66 1.08 1.04 -2.05 -2.83 -1.85 -1.8 -1.03 -0.85 -1.7 -1.29
Smo416854 (PACid_15403869)
-0.68 -0.61 -0.73 0.06 0.16 -0.15 -0.3 -0.06 0.16 -0.24 -0.24 -0.34 2.1 -1.61 -0.85 1.39 -0.03 -0.94 0.38 -2.56 -3.4 -6.68 0.6 0.51 -1.58 0.17 -0.15 0.13 -0.02 0.13 0.05 0.37
Smo419423 (PACid_15409625)
-4.32 - - - - -3.79 - -4.61 - - - - 3.68 -5.07 - 4.23 - - - - - - - -4.31 - -4.15 - - - -4.33 - -
Smo419505 (PACid_15410393)
-0.19 -0.63 -0.44 -0.37 0.32 -0.12 -0.03 0.26 -0.1 0.17 0.2 -0.09 1.61 -0.67 -0.85 0.86 -0.46 -0.57 0.41 -2.69 -2.7 -1.98 0.78 0.79 -0.76 0.1 -0.71 -0.36 0.21 -0.04 0.15 0.49
Smo419676 (PACid_15411307)
- - - - - - -4.23 -4.36 - - - - 3.4 -1.61 -1.62 1.97 0.77 0.18 1.42 - - - 0.64 0.69 -3.0 -0.17 0.32 -1.83 0.62 0.22 0.22 0.73
Smo420686 (PACid_15414625)
-4.74 - - -7.91 -4.54 -7.34 - -6.74 - -6.21 -4.91 - 3.42 -3.39 - 3.44 -3.3 -2.28 0.34 - - - -2.24 0.25 0.23 1.27 0.48 -0.21 -1.22 -0.96 -1.55 -2.81
Smo421269 (PACid_15414407)
-0.59 -0.36 -1.29 -1.09 -0.16 -0.22 -1.01 -0.83 -0.9 -0.6 -0.4 -1.05 2.02 0.24 1.03 2.32 -1.77 -5.92 -0.12 - - -3.41 -0.73 -0.5 -1.06 1.07 1.54 1.01 -1.26 -1.07 -0.72 -0.92
Smo423866 (PACid_15402380)
-2.28 - - - - - - - - - - - 3.78 1.02 - 3.69 - -0.55 -0.82 - - - - - - - 0.46 - - - -0.83 -
Smo424831 (PACid_15405224)
-0.87 -0.89 -1.49 -0.25 -0.31 -0.83 -0.66 -0.66 -0.33 -0.58 -1.12 -0.54 2.21 0.53 0.41 1.84 -0.12 0.76 0.94 - - - 0.22 0.34 -0.65 -0.21 -0.08 0.55 -0.62 0.09 -1.7 -0.76
Smo429269 (PACid_15415476)
-1.21 -0.96 -0.94 -0.88 -0.73 -1.24 -1.12 -1.12 -1.05 -0.9 -0.96 -1.24 2.88 1.15 -1.78 2.11 0.58 -0.87 -0.1 - - - 0.11 0.14 -4.66 -0.43 -0.93 -0.87 0.12 0.27 0.08 0.63
Smo4297 (PACid_15414500)
-0.34 -1.84 -1.93 -0.65 -0.93 -0.57 -0.95 -0.41 -1.02 0.03 -0.56 -0.87 3.55 -0.12 -4.42 3.4 - -6.38 -4.47 - - - -4.82 -2.57 -5.25 -0.67 -2.74 -3.11 -3.11 -2.8 -4.79 -3.19
Smo432635 (PACid_15405022)
-0.29 -0.12 -0.76 -0.17 -0.02 -0.24 -0.31 -0.16 -0.5 -1.0 -0.25 -0.99 2.4 0.18 1.17 1.92 -0.26 -0.96 0.08 -2.19 -5.06 -0.15 0.09 -0.01 -0.91 -1.38 -0.68 -0.36 -0.4 -0.87 -0.9 -1.15
Smo56569 (PACid_15402118)
-0.76 -0.86 -0.54 -1.19 -1.08 -2.72 -1.42 -0.91 -3.46 -0.42 -1.83 -1.45 3.65 -1.04 - 2.65 -5.1 - -4.52 - - - -1.02 2.24 - -1.71 -1.53 -1.3 -2.98 -2.0 -1.54 -1.67
Smo67834 (PACid_15414578)
-0.88 -0.24 -0.32 -0.15 -0.21 -0.06 -0.32 -0.31 -0.46 -0.22 -0.46 -0.83 2.39 0.24 -1.41 1.67 -0.36 -0.55 -1.06 -3.02 -0.75 -1.52 -0.02 0.05 -0.2 0.03 0.65 0.72 -0.22 -0.21 -1.26 -1.54
Smo68566 (PACid_15415224)
-0.0 -0.17 -0.24 -0.75 -0.23 -0.6 -1.24 -0.82 -0.84 -0.5 -0.61 -0.95 2.62 0.51 -4.48 2.63 -2.94 -1.77 -2.39 -5.39 - -7.39 1.15 2.06 -5.25 -2.04 -2.02 -1.32 -0.92 -0.5 -1.64 -1.26
Smo68639 (PACid_15415917)
-0.61 -0.58 -0.44 -0.49 -0.27 -0.5 -0.58 -0.31 -0.56 -0.14 -0.3 -0.29 2.75 -0.44 -5.28 2.23 -0.48 -0.73 0.22 - -0.75 - 1.04 -0.76 -1.1 -1.11 -1.45 -1.02 -0.22 -0.17 -0.66 -0.08
Smo76727 (PACid_15417941)
-0.05 0.07 -0.14 0.24 0.16 0.18 0.16 0.04 0.0 -0.12 -0.1 -0.08 1.16 0.06 0.93 1.3 -0.96 -4.22 -0.48 -3.11 -1.68 0.14 -0.58 -0.58 -0.4 0.34 1.03 0.77 -0.93 -0.84 -1.02 -0.85
Smo78340 (PACid_15420772)
-1.83 -1.87 -3.87 -2.47 -1.45 -2.48 -2.54 -2.19 -2.89 -1.76 -1.74 -2.9 3.66 1.54 1.62 3.18 -6.15 -6.02 -2.57 - - - -6.8 -2.51 -2.01 -2.93 -2.02 -1.47 -3.97 -2.81 -6.08 -3.53
Smo79528 (PACid_15402801)
-1.77 -0.83 -0.65 -1.0 -0.35 -0.89 -0.51 -1.05 -1.43 -1.54 -1.47 -1.52 3.01 1.21 0.18 2.45 -0.82 0.44 -0.51 - -4.44 - 0.55 0.99 -3.68 -1.49 -1.01 -2.19 -1.02 -0.99 -1.58 -1.09
Smo7960 (PACid_15406094)
-1.64 -1.91 -0.93 -0.82 0.41 -0.92 -0.99 -0.02 -0.46 0.62 0.34 0.14 2.6 -1.53 -2.38 2.09 -2.12 -0.43 0.5 -4.04 - -2.29 -0.35 0.16 -0.78 0.83 -1.4 -0.62 0.02 0.07 0.04 -1.17
Smo83123 (PACid_15411841)
-0.05 -0.16 -0.12 -0.39 -0.18 -0.34 -0.6 -0.45 -0.4 -0.05 0.14 -0.43 2.69 1.07 -0.12 2.02 -1.08 -1.76 0.05 -2.12 -6.11 - -0.44 -0.03 -2.86 0.06 -1.05 -0.4 -0.95 -0.66 -0.96 -1.06
Smo84387 (PACid_15416379)
-0.48 -1.09 -1.26 -1.52 -1.67 -1.38 -1.26 -1.11 -1.14 -0.29 -0.4 -0.53 2.68 1.08 1.01 3.22 -2.29 -3.32 -0.14 -2.56 -4.91 -4.48 -2.06 -1.54 -2.85 0.99 -1.45 -0.94 -1.76 -1.47 -3.24 -3.47
Smo85365 (PACid_15419265)
-1.08 -1.28 -1.58 -1.43 -1.76 -1.81 -2.11 -1.23 -1.58 -1.12 -1.35 -1.45 2.75 0.77 -1.76 2.98 -1.49 -2.02 0.32 -0.91 -2.04 -5.91 0.28 0.88 0.5 -0.01 -1.74 -1.31 -0.64 -0.16 -1.71 -1.59
Smo90295 (PACid_15411216)
-1.11 -0.68 -0.21 -0.31 0.07 -0.03 -0.03 -0.36 -0.6 -0.68 -0.65 -1.29 2.54 1.06 0.14 2.09 -1.03 -0.39 -1.4 0.51 -0.35 -0.53 -1.51 -1.26 -1.04 -0.76 0.0 0.16 -1.63 -1.08 -1.8 -2.03
Smo9078 (PACid_15405042)
- - - - - - - - - - - - 3.56 - - 1.98 -0.5 -1.0 1.93 - - - 0.13 0.97 1.36 - - - 1.48 -0.83 0.43 -0.13
Smo91270 (PACid_15414123)
-0.2 -0.49 -0.21 -0.37 -0.39 -0.62 -0.89 -0.11 -0.03 0.38 0.26 -0.12 2.33 0.06 -0.77 1.74 -2.3 -2.14 0.91 -1.33 -2.07 -1.0 0.48 1.31 -1.04 0.46 -1.21 -0.98 -1.66 -1.18 -1.6 -1.75
Smo91888 (PACid_15418663)
-0.52 -0.46 -0.16 -0.22 -0.1 -0.26 -0.54 -0.14 0.15 0.21 0.21 -0.22 2.53 0.63 -0.78 1.52 -1.58 -1.85 -0.27 -1.35 -4.79 - 0.61 0.9 -0.22 -0.67 -0.59 -1.07 -0.83 -0.74 -0.62 -0.5
Smo92767 (PACid_15420736)
-3.41 -3.93 -3.29 -3.11 -2.08 -3.25 -3.94 -2.04 -3.42 -3.34 -3.3 -3.26 3.93 1.11 -9.09 3.54 -7.09 -3.16 -3.5 -6.72 - - -6.86 -4.13 -2.98 -1.68 -2.05 -1.07 -6.11 -4.15 -9.51 -4.17
Smo95398 (PACid_15404107)
-0.63 -0.15 -0.2 -0.27 -0.06 -0.18 -0.4 -0.34 -0.06 -0.29 -0.1 -0.37 2.14 0.95 -0.85 2.18 -0.4 -1.35 0.23 -1.77 -2.52 -4.35 0.26 0.62 -0.73 -0.34 -1.2 -0.77 -0.54 -0.44 -0.87 -1.09
Smo97299 (PACid_15409302)
-1.11 -2.05 -4.64 -2.32 -4.34 -2.74 -4.14 -1.42 -2.36 -0.64 -1.42 -2.09 3.55 0.54 -4.14 3.49 -4.33 -3.31 -1.07 - - - -3.52 -1.47 -2.77 0.8 -1.91 -2.77 -1.99 -2.08 -0.84 -2.9

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.