Heatmap: Cluster_189 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo102633 (PACid_15407521)
-0.08 -0.26 -0.25 0.0 0.23 0.31 0.3 0.58 0.41 0.36 0.28 0.15 -0.25 -0.93 0.17 -0.19 -0.42 -1.03 0.0 -3.37 -4.46 -5.0 -0.13 -0.14 -0.76 1.18 0.9 0.92 0.04 -0.02 -0.08 0.19
Smo111629 (PACid_15411919)
-0.11 -0.32 -0.53 -0.28 -0.19 0.19 0.51 0.66 0.72 0.6 0.54 0.11 -0.28 -1.17 1.22 0.07 -0.52 -1.01 0.01 -4.1 -2.88 -1.42 -1.02 -1.05 -1.66 0.71 1.11 1.07 -0.34 -0.2 -0.17 -0.16
Smo11806 (PACid_15405461)
0.22 0.16 -0.1 0.03 0.21 0.38 0.38 0.51 0.13 0.15 0.17 0.04 -1.59 -0.85 1.07 -0.33 -0.61 -0.57 0.72 - -2.83 - -0.78 -0.74 - 0.43 1.48 1.38 -0.09 -0.08 -0.48 -0.31
Smo131125 (PACid_15422372)
-0.03 0.17 0.14 0.26 0.09 0.26 0.25 0.29 0.11 0.09 -0.13 -0.07 -0.37 -0.32 0.57 -0.11 -0.31 -0.98 0.37 -1.91 -1.65 -2.9 -0.4 -0.36 -0.56 0.91 0.87 0.9 0.01 -0.03 0.02 -0.29
Smo133452 (PACid_15408266)
-0.46 -0.37 -0.07 0.35 0.42 0.15 0.13 0.15 0.05 0.04 -0.0 -0.41 -0.86 -0.04 0.58 -0.26 0.01 -1.23 0.65 -1.53 -2.52 -2.52 -0.18 -0.37 -1.98 1.19 1.1 1.12 -0.4 -0.33 0.07 0.21
Smo139448 (PACid_15403451)
-0.11 -0.06 0.02 0.15 -0.02 0.06 0.21 0.38 0.46 0.41 0.46 0.28 -0.26 -0.19 0.32 -0.02 -0.33 -0.99 0.03 -1.48 -2.37 -1.32 -0.34 -0.23 -0.85 0.86 0.69 0.62 -0.26 -0.32 0.14 0.12
Smo148115 (PACid_15405373)
-0.28 -0.36 -0.21 0.07 0.3 0.24 0.4 0.58 0.35 0.24 0.13 -0.1 -0.19 -0.76 0.7 -0.03 -0.53 -1.28 0.14 -2.5 -3.43 -2.88 -0.39 -0.04 -2.79 1.06 1.12 1.07 -0.21 -0.06 -0.04 0.07
Smo152781 (PACid_15422049)
-0.12 0.12 0.39 0.18 0.37 0.21 0.05 0.37 0.02 -0.05 0.11 -0.07 -0.04 -0.66 0.22 0.25 -0.12 -0.79 0.12 -2.69 -3.33 -4.49 -0.32 -0.18 -2.05 1.01 1.06 1.16 -0.21 -0.1 -0.06 -0.17
Smo163635 (PACid_15409083)
0.02 0.09 -0.1 0.27 0.56 0.49 0.3 0.56 0.26 0.2 0.02 -0.12 -0.39 -0.76 0.26 -0.08 -0.22 -1.0 0.34 - -6.57 - -0.21 -0.27 -2.56 1.09 1.08 1.27 0.09 0.14 -0.86 -0.82
Smo169846 (PACid_15405820)
-0.13 -0.12 -0.11 0.03 0.15 0.13 0.22 0.22 0.05 0.03 -0.01 -0.11 -0.13 -0.51 0.55 0.14 -0.46 -0.84 0.23 -2.54 -2.04 -3.16 -0.36 -0.18 0.23 1.12 1.1 1.03 -0.34 -0.28 -0.12 -0.27
Smo173175 (PACid_15412602)
0.0 -0.06 0.06 0.05 0.23 0.19 0.13 0.34 0.19 0.06 0.13 -0.11 -0.11 -0.24 0.74 -0.03 -0.25 -0.54 -0.1 -2.0 -2.54 -1.7 -0.11 -0.07 -1.21 0.97 0.84 0.94 -0.17 -0.07 -0.33 -0.26
Smo177376 (PACid_15403381)
0.14 0.01 0.29 0.3 -0.01 0.21 0.43 0.72 0.66 0.72 0.52 0.4 -0.18 -0.39 0.13 0.03 -0.42 -0.87 -0.01 -10.0 -5.41 -6.01 -0.24 -0.24 -3.67 0.78 0.49 0.42 -0.12 -0.15 0.1 0.13
Smo177444 (PACid_15404071)
-0.4 -0.41 -0.31 0.16 0.32 0.34 0.32 0.62 0.34 0.09 -0.06 -0.34 0.15 -0.28 0.24 0.25 -0.62 -1.64 0.45 -3.07 -1.93 -1.61 -0.12 0.04 -0.39 1.11 1.02 1.01 -0.43 -0.37 -0.61 -0.42
Smo181271 (PACid_15414775)
0.12 0.06 0.08 0.48 0.43 0.43 0.33 0.42 0.36 0.24 0.1 0.04 -0.43 0.09 -0.27 -0.2 -0.15 -0.91 0.05 -3.91 -1.45 -4.22 -0.1 -0.21 -0.12 0.64 0.79 0.85 -0.33 -0.22 -0.37 -0.21
Smo185811 (PACid_15408432)
0.17 -0.08 -0.12 0.11 0.11 0.17 0.08 0.28 0.16 0.13 0.11 -0.05 -0.07 0.13 0.59 0.28 -0.35 -0.74 0.06 -2.28 -4.55 -1.9 -0.23 -0.22 -1.82 1.03 1.1 0.94 -0.25 -0.2 -0.3 -0.22
Smo232856 (PACid_15422714)
-0.09 -0.08 -0.12 0.19 0.28 0.1 0.34 0.58 0.56 0.52 0.43 0.23 -0.25 -0.3 0.26 -0.05 -0.48 -0.9 0.01 -2.23 -2.02 -1.8 -0.32 -0.2 -0.96 0.83 0.49 0.29 -0.12 -0.12 -0.04 0.44
Smo233936 (PACid_15403971)
0.15 0.01 -0.03 0.31 0.36 0.23 0.25 0.58 0.33 0.31 0.29 0.1 -0.05 -0.07 0.65 -0.12 -0.67 -1.39 -0.16 -10.41 -5.37 -5.15 -0.43 -0.32 -2.96 1.22 0.92 0.86 -0.49 -0.46 0.18 0.13
Smo268301 (PACid_15413379)
0.03 -0.21 -0.18 0.14 0.07 -0.04 -0.14 0.08 0.2 0.05 -0.03 -0.09 0.02 0.33 0.41 0.54 -0.42 -0.87 0.59 -3.18 -1.96 -3.49 -0.12 0.05 -0.9 1.09 0.87 0.89 -0.41 -0.15 -0.29 -0.06
Smo272178 (PACid_15401569)
0.16 -0.03 -0.02 0.23 0.15 0.06 0.21 0.49 0.41 0.44 0.39 0.34 -0.64 0.02 0.34 -0.33 -0.3 -0.8 -0.21 -3.73 -1.32 -1.76 -0.5 -0.44 -0.45 0.9 0.61 0.61 -0.28 -0.29 0.15 0.25
Smo402481 (PACid_15404308)
-0.11 0.09 -0.01 0.23 0.3 0.32 0.48 0.37 0.17 0.12 0.06 -0.1 -0.07 -0.72 0.11 0.16 -0.55 -1.03 0.04 -1.58 -2.25 -1.45 -0.4 -0.43 -0.56 0.91 1.22 1.34 -0.44 -0.35 -0.7 -0.84
Smo402861 (PACid_15407314)
0.07 0.04 0.04 0.23 0.3 0.29 0.35 0.51 0.39 0.33 0.31 0.1 -0.54 -1.03 -0.22 -0.26 -0.58 -1.12 0.01 -2.37 -2.64 -1.77 -0.35 -0.43 -2.33 1.12 1.23 1.06 -0.4 -0.28 -0.02 0.2
Smo406615 (PACid_15417497)
-0.04 0.17 0.16 0.18 0.34 0.28 0.3 0.35 0.11 0.12 -0.05 -0.13 -0.06 -0.45 0.11 0.12 -0.24 -0.86 0.3 - - - -0.23 -0.2 -2.29 1.07 1.26 1.39 -0.15 -0.13 -0.7 -0.67
Smo429498 (PACid_15417010)
0.34 0.3 0.29 0.34 0.21 0.33 0.25 0.39 0.41 0.32 0.2 0.08 -0.5 -1.11 0.69 -0.43 -0.34 -0.99 0.09 -8.18 -3.07 -2.18 -0.68 -1.04 -3.46 1.12 0.93 1.33 -0.01 -0.14 -0.44 -0.58
Smo430219 (PACid_15418484)
-0.05 0.33 0.15 0.1 0.51 0.04 0.37 0.2 0.07 0.14 0.16 -0.23 -0.22 -0.4 -0.2 0.22 -0.48 -1.34 0.06 - -5.04 -4.68 -0.23 -0.11 -1.29 1.17 1.45 1.6 -0.32 -0.25 -1.3 -1.12
Smo437336 (PACid_15417439)
-0.11 -0.12 0.01 0.23 0.33 0.3 0.43 0.66 0.51 0.5 0.33 0.16 -0.48 -0.5 0.02 -0.34 -0.58 -1.28 0.07 -1.62 -1.55 -2.37 -0.54 -0.42 -0.51 0.72 0.89 0.92 -0.31 -0.2 -0.14 0.02
Smo437796 (PACid_15420626)
-0.09 0.01 -0.08 0.34 0.44 0.35 0.39 0.5 0.43 0.26 0.22 0.02 0.12 -0.66 -0.19 0.14 -0.45 -1.25 -0.05 -1.63 -3.9 -2.66 -0.22 -0.2 -0.88 0.81 1.2 1.22 -0.32 -0.29 -0.81 -0.84
Smo439124 (PACid_15421614)
-0.16 -0.21 -0.19 0.05 0.33 0.31 0.29 0.41 0.15 0.06 0.01 -0.42 -0.02 -1.04 0.27 -0.0 -0.46 -0.23 0.11 -4.72 -1.77 -2.34 -0.01 0.13 -0.85 0.97 1.29 1.13 -0.17 -0.13 -0.39 -0.5
Smo439355 (PACid_15423237)
-0.16 -0.31 -0.22 0.23 0.42 0.33 0.52 0.71 0.45 0.39 0.25 0.04 -0.22 -0.52 -1.1 0.16 -0.58 -2.21 0.43 -5.33 -2.63 -4.95 -0.2 -0.33 -1.54 1.18 0.96 0.94 -0.17 -0.17 0.14 0.14
Smo439455 (PACid_15401736)
-0.16 -0.49 -0.32 0.03 0.5 0.51 0.64 0.7 0.57 0.3 0.21 0.09 -0.68 -1.25 -0.15 -0.23 -0.66 -1.89 -0.05 -4.03 -2.51 -1.11 -0.72 -0.49 -1.59 1.43 1.23 1.31 -0.3 0.01 -0.79 -0.6
Smo440240 (PACid_15403339)
-0.11 -0.29 -0.23 0.23 0.37 0.37 0.54 0.68 0.48 0.5 0.28 0.26 -0.39 0.22 -0.15 -0.11 -0.51 -1.79 0.27 -3.84 -2.88 -4.18 -0.37 -0.48 -0.99 0.93 0.92 0.98 -0.26 -0.2 -0.23 -0.29
Smo440330 (PACid_15404069)
0.18 0.32 0.37 0.39 0.39 0.27 0.06 0.15 0.15 0.08 0.17 0.03 -0.02 -0.15 0.48 0.31 -0.13 -0.92 0.22 -4.34 -2.95 -3.12 -0.31 -0.29 -0.65 0.75 0.72 0.83 -0.18 -0.01 -0.54 -0.54
Smo442419 (PACid_15410797)
-0.15 0.15 0.17 0.29 0.4 0.25 0.19 0.37 0.16 0.2 0.06 -0.08 0.1 -0.22 0.44 0.28 -0.47 -0.94 0.73 -8.39 - - -0.19 -0.08 -4.09 0.83 1.12 1.15 -0.13 -0.07 -0.92 -0.8
Smo442877 (PACid_15414045)
-0.5 -0.31 -0.28 0.05 0.3 0.39 0.51 0.58 0.38 0.19 0.04 -0.35 -0.36 -0.09 0.49 0.03 -0.92 -1.68 0.17 -1.18 -2.25 -0.75 -0.48 -0.38 -0.75 1.09 1.22 1.11 -0.53 -0.38 -0.5 -0.53
Smo443474 (PACid_15413914)
-0.03 -0.15 -0.11 0.02 -0.42 -0.08 0.28 0.56 0.39 0.47 0.43 0.18 -0.4 0.05 0.83 -0.17 -0.69 -1.68 0.11 -3.92 - -1.98 -0.34 -0.49 -1.46 0.69 1.34 1.31 0.07 0.12 -0.7 -0.76
Smo446134 (PACid_15420176)
0.09 0.04 -0.04 0.14 0.4 0.04 0.06 0.17 0.39 0.23 0.28 0.14 -0.19 0.33 0.52 -0.14 -0.32 -0.96 -0.22 -3.82 -1.79 -3.04 -0.22 -0.05 -1.04 1.18 0.9 0.85 -0.34 -0.27 -0.43 -0.35
Smo61964 (PACid_15420095)
-0.19 -0.18 0.06 0.17 0.26 0.13 0.19 0.27 0.14 0.03 0.0 -0.09 -0.44 -0.2 0.75 -0.12 -0.05 -1.2 0.46 -3.07 -4.7 -3.67 -0.05 -0.0 -2.03 0.61 1.1 1.03 -0.12 -0.05 0.11 0.36
Smo75763 (PACid_15415158)
-0.18 0.04 0.09 0.38 0.5 0.34 0.26 0.32 0.02 -0.14 -0.09 -0.39 -0.03 -0.11 0.42 0.21 -0.28 -1.07 0.06 -4.35 -2.49 -4.99 0.03 0.05 -0.97 0.69 1.0 0.96 -0.49 -0.41 0.2 0.3
Smo76001 (PACid_15412591)
-0.61 -0.25 -0.05 0.18 0.25 0.36 0.16 0.4 0.16 -0.1 -0.23 -0.54 -0.23 -0.39 -0.48 0.44 -0.27 -1.2 0.74 - -5.59 - -0.33 -0.42 -2.57 1.24 1.43 1.54 -0.1 -0.05 -0.32 -0.17
Smo76535 (PACid_15416421)
0.01 -0.18 -0.06 0.01 0.2 0.04 0.09 0.31 0.19 0.13 0.12 -0.03 0.06 0.08 0.64 0.23 -0.39 -0.93 0.29 -2.67 -2.99 -2.82 -0.2 -0.1 -1.62 1.08 0.9 0.98 -0.26 -0.14 -0.19 -0.19
Smo78287 (PACid_15420126)
-0.16 0.02 0.02 0.27 0.53 0.3 0.16 0.25 0.15 0.1 0.02 -0.04 0.12 -0.47 -0.1 0.58 -0.43 -1.4 0.56 -2.74 -4.29 -5.99 0.05 0.16 -1.9 1.14 0.99 1.05 -0.12 -0.01 -0.91 -0.87
Smo78845 (PACid_15402274)
-0.17 -0.15 0.0 0.04 0.24 0.11 0.27 0.35 0.21 0.16 0.19 -0.07 -0.14 -0.47 0.52 -0.03 -0.6 -0.87 0.29 -2.11 -2.73 -1.1 -0.26 -0.13 -0.82 1.08 1.07 1.16 -0.44 -0.39 -0.41 -0.44
Smo79603 (PACid_15403486)
0.06 -0.09 0.02 0.06 0.08 0.09 -0.01 0.2 0.01 -0.06 -0.04 -0.12 0.04 -0.11 0.34 0.27 -0.21 -0.59 0.27 -3.79 -3.57 -3.19 -0.17 -0.05 -0.32 1.08 1.02 1.04 -0.24 -0.13 -0.15 -0.19
Smo81472 (PACid_15408278)
0.03 0.12 0.18 0.24 0.38 0.42 0.17 0.4 0.16 0.15 0.12 -0.13 0.26 -0.22 0.5 0.24 -0.34 -1.01 0.17 -3.29 -4.43 -3.47 -0.39 -0.15 -0.84 0.83 0.84 0.89 -0.39 -0.32 -0.32 -0.09
Smo82814 (PACid_15414278)
-0.01 -0.02 -0.45 -0.06 0.17 0.2 0.39 0.44 0.42 0.55 0.33 0.12 -0.25 -0.71 0.73 -0.13 -0.54 -0.55 0.1 -2.16 -2.1 -3.77 -0.24 0.12 -0.93 0.63 0.74 0.57 -0.24 -0.14 0.12 0.31
Smo87459 (PACid_15403438)
0.28 0.29 0.22 0.41 0.52 0.13 0.12 0.33 0.1 0.21 0.09 0.08 0.05 0.12 0.43 0.27 -0.44 -1.15 -0.22 -4.26 -2.94 -4.5 -0.29 -0.25 -1.72 0.94 1.02 0.87 -0.58 -0.49 -0.09 -0.22
Smo90980 (PACid_15416445)
0.18 0.08 0.1 0.1 0.34 0.32 -0.01 0.1 0.29 0.2 0.07 0.13 0.37 -0.19 -0.12 0.42 -0.43 -3.12 -0.02 -3.88 -3.02 - 0.07 0.12 -2.31 1.06 1.11 1.23 -0.21 -0.02 -0.87 -0.37

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.