Heatmap: Cluster_85 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101447 (PACid_15403124)
-0.42 -0.69 -0.34 -0.46 -0.23 0.07 -0.24 0.16 -0.09 -0.36 -0.38 -0.41 -0.21 -1.5 -0.87 0.07 0.19 0.74 0.19 -0.13 -0.24 0.21 0.53 0.62 -0.59 0.08 0.05 -0.03 0.58 0.48 0.42 0.46
Smo106391 (PACid_15417178)
-0.21 -0.27 -0.21 -0.12 -0.19 -0.17 0.08 0.16 0.18 0.25 0.19 0.09 -0.09 0.1 -0.47 0.16 -0.76 -1.09 -0.09 -0.2 0.13 -1.98 0.72 1.03 0.86 0.51 -0.58 -0.75 -0.18 -0.31 0.18 -0.05
Smo111283 (PACid_15408918)
2.63 2.38 - - - - - 2.19 - - - - - - - 2.52 - - 3.36 - - - - - - - - - - - - -
Smo111494 (PACid_15410569)
3.19 2.94 - - - - - 2.75 - - - - - - - 3.08 - - - - - - - - - - - - - - - -
Smo115332 (PACid_15421216)
- - - - - - - - - - - - 1.34 2.25 - 1.37 1.22 - 2.21 - - - - - - - - - - - 3.92 -
Smo124314 (PACid_15403125)
0.66 -0.37 -3.88 -3.33 -1.85 -1.42 -3.72 -0.47 -1.36 -1.6 -0.96 -0.19 -5.1 -2.55 - -2.09 -0.86 - 0.75 - - - 0.27 -1.22 1.4 2.35 0.52 -2.75 0.49 -0.18 3.28 -1.97
Smo124329 (PACid_15403145)
0.5 -0.59 -1.72 -3.88 0.56 -4.26 - 0.15 -1.15 -2.97 -1.08 -0.37 - -4.38 - - -0.03 - -0.28 - - - 0.76 -0.46 0.22 3.18 0.23 -1.92 0.61 -0.09 2.74 -
Smo125257 (PACid_15405406)
- - - - - - - - - - - - - - - - - - 3.92 - - - - - - - - - - - 4.08 -
Smo177845 (PACid_15407117)
-0.73 -0.62 -1.9 -0.24 0.18 -0.34 -1.94 -1.79 -4.76 -2.0 -1.11 -3.14 -2.4 -3.78 -2.64 -0.27 0.37 0.72 0.94 1.38 -27.83 - 0.83 0.88 -0.43 -0.22 -0.57 -1.31 -0.43 -1.4 3.1 0.71
Smo19362 (PACid_15402826)
-0.19 -0.92 -2.16 -0.96 -0.96 0.09 -0.36 -0.49 0.03 -0.15 -0.35 -0.05 -1.97 -4.76 -2.6 -0.48 0.57 0.65 0.28 -1.49 -0.07 0.72 0.89 0.83 0.65 -0.54 -0.86 -0.72 0.99 0.85 0.99 0.92
Smo22558 (PACid_15413522)
0.54 0.29 0.29 0.33 0.17 0.32 0.39 0.24 0.34 0.34 -0.03 -0.2 -0.77 -0.48 -1.29 0.09 0.18 0.28 -0.05 0.03 -0.3 0.87 0.28 0.0 -2.3 -1.39 -0.86 -0.68 -0.04 -0.11 0.26 -0.35
Smo227279 (PACid_15403249)
-0.45 -0.32 -0.26 -0.23 -0.35 0.01 -0.43 -0.11 -0.15 -0.04 -0.32 -0.47 -0.11 0.34 -0.57 0.21 -0.22 -0.67 0.2 -1.26 -0.31 -1.19 0.75 0.73 0.53 0.82 0.44 0.13 0.1 0.14 0.41 0.14
Smo270153 (PACid_15418026)
-0.46 -0.17 -0.37 -0.35 -0.16 -0.38 -0.49 -0.3 -0.15 0.05 -0.08 -0.13 -0.42 0.48 -1.15 -0.2 -1.31 -0.56 1.48 -0.16 -0.24 -0.62 -0.21 -0.26 1.23 1.07 0.6 -0.05 -0.91 -0.86 0.34 0.18
Smo402006 (PACid_15423407)
5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Smo402704 (PACid_15406480)
5.0 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Smo402877 (PACid_15407346)
2.75 - - - - 1.55 - - 1.09 - - - - - - 1.79 - - 3.48 - - - - - - 2.49 - - - - - -
Smo403844 (PACid_15410371)
-1.92 -2.81 -2.85 -2.86 -4.02 -3.84 -3.55 -3.9 -3.82 -2.0 -2.46 -3.06 -1.41 -0.02 0.39 0.06 0.76 0.14 1.31 -1.53 1.35 0.46 0.28 0.73 1.47 -1.18 -1.37 -2.89 0.8 0.97 1.68 1.86
Smo404607 (PACid_15411657)
-2.93 -1.76 - -0.99 - -0.93 -0.44 -0.31 -3.97 -1.3 -1.39 -0.44 0.02 -0.21 0.47 -0.74 1.19 0.99 0.5 -0.02 0.34 - 1.27 0.32 1.91 - 0.12 - 0.63 0.96 0.31 1.25
Smo406209 (PACid_15414508)
-0.66 -0.18 -0.7 -0.8 -0.85 -0.83 -0.3 -0.71 -0.59 -0.6 -1.13 -0.93 -1.04 -1.03 0.64 -1.53 -1.26 -1.92 -1.22 -1.78 -0.65 1.81 -1.3 -0.94 0.74 -0.27 1.03 0.45 -1.79 -1.74 2.0 2.2
Smo407700 (PACid_15421077)
3.49 - - - - - - - 3.06 - - - - - - - 3.64 - - - - - - - - - - - - - - -
Smo407701 (PACid_15421078)
2.36 - - - - - - - - - - - - - 2.61 - - - 4.38 - - - - - - - - - - - - -
Smo408051 (PACid_15418862)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 -
Smo410071 (PACid_15402620)
2.57 0.83 -1.05 -0.97 -0.76 -0.2 -0.31 0.03 0.24 0.97 0.4 -0.05 -1.64 2.09 -1.23 0.35 -1.36 -1.08 0.14 - -3.62 - -2.49 -2.23 -4.46 0.9 0.21 -3.29 0.48 -1.02 -0.54 -3.0
Smo410097 (PACid_15402664)
-0.08 -0.23 -0.14 -0.36 -0.38 -0.54 0.12 -0.59 -0.15 -0.06 0.58 0.27 -1.8 0.13 -0.11 -0.84 0.32 0.69 0.47 -5.99 -2.26 -0.67 -0.57 -0.41 -0.27 -1.02 -0.94 -0.81 0.45 0.74 1.55 1.57
Smo410738 (PACid_15407860)
-1.55 - - - - 0.65 - - - - 0.43 - - - 1.15 0.84 0.61 1.22 2.61 - - - - - 2.41 0.71 2.01 - -0.38 1.2 -0.41 -
Smo410821 (PACid_15408632)
- - - - - - - - - - - - - - - - - - 4.0 - - - - - - - - - - - 4.0 -
Smo413344 (PACid_15413776)
-1.21 -0.83 - -0.89 - - - - - - -0.33 0.92 -1.67 -0.16 2.11 - 0.6 2.14 0.21 - - -0.06 0.57 1.53 - -0.2 -0.4 - 1.56 1.26 -1.74 1.36
Smo413485 (PACid_15414669)
-0.17 -0.2 -0.07 0.23 -0.09 0.24 0.35 -0.19 0.27 0.52 0.37 0.05 -1.19 0.72 0.4 -0.15 0.33 -0.07 1.23 -3.41 -2.15 -3.52 -1.01 -0.77 -1.98 -1.08 -0.74 -1.61 0.43 0.45 1.11 1.01
Smo414288 (PACid_15416003)
-0.19 -0.15 -0.63 -0.62 -0.55 -0.3 0.08 -0.8 -0.28 0.1 0.23 -0.21 -1.23 0.04 -0.25 -0.38 0.54 0.53 0.5 -0.97 -0.75 0.18 -0.28 -0.19 0.29 -1.15 -0.72 -1.0 0.09 0.57 1.36 1.41
Smo415673 (PACid_15421806)
-0.67 -2.1 -3.98 -3.54 -2.95 - -2.98 -2.78 -4.58 -4.59 -1.96 -1.51 - - - -3.97 0.02 0.66 0.32 - 1.57 - 1.88 1.22 0.65 -0.29 0.85 - 2.12 2.05 1.64 0.3
Smo416356 (PACid_15422407)
2.61 1.96 -0.61 -0.34 1.06 -0.78 -1.06 -1.16 0.28 1.21 0.75 -0.35 0.63 0.57 -0.97 0.34 -2.41 -0.61 0.04 - -1.87 - -0.58 -0.56 -3.21 -2.36 -1.5 -1.91 -0.78 -1.24 -1.01 -1.93
Smo421485 (PACid_15415945)
-5.09 -4.99 -1.55 -4.15 - - - - - - -3.99 -3.35 -2.35 -0.09 0.11 0.16 0.23 -2.62 0.86 - 1.43 - 1.31 0.35 1.83 1.81 1.9 -0.91 0.55 -0.25 1.86 0.25
Smo421486 (PACid_15415946)
-1.47 -1.57 -4.99 -6.5 -2.3 -2.72 - -2.63 -32.77 -3.98 -3.76 -1.78 -3.55 -4.48 - 0.04 0.35 -1.46 0.89 - 2.08 - 2.13 0.61 1.57 -2.14 -1.22 - 0.88 -0.05 2.93 0.55
Smo422481 (PACid_15418834)
3.01 - - - - - - - - - - - - - - 3.2 - - 3.88 - - - - - - - - - - - - -
Smo423152 (PACid_15419367)
2.47 0.8 - - - - - - 2.68 - - - - 0.99 3.02 - 2.11 - 1.97 - - - - - - - - - - - - -
Smo423491 (PACid_15421657)
-9.4 -8.02 - - - -7.81 - - - -7.27 -6.97 -8.1 0.94 0.85 1.92 0.74 1.94 0.53 -0.67 -0.43 -3.55 -2.11 1.41 1.69 -0.48 1.42 -1.42 -0.83 0.64 0.32 0.86 -0.06
Smo423655 (PACid_15423110)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 5.0 -
Smo426053 (PACid_15404973)
2.7 1.59 -0.25 -0.24 0.38 -0.56 -1.3 -0.51 -0.49 1.48 0.97 -0.72 0.45 0.98 -0.45 0.46 -1.87 -2.86 0.34 -7.27 -4.83 -6.6 -0.68 -0.94 -2.81 -1.78 -2.55 -3.65 0.11 -0.46 -0.88 -1.81
Smo427722 (PACid_15413336)
-0.76 -0.49 -0.53 -0.87 -1.09 -0.57 -1.02 -1.58 -1.18 -1.03 -0.73 -0.48 -0.98 -0.41 -0.62 -0.75 0.34 0.33 0.36 -0.33 -1.28 0.85 -1.28 -2.1 1.25 -0.69 -1.02 -1.27 0.65 1.03 1.96 1.96
Smo428017 (PACid_15410867)
3.56 - - - - - - - - - - - - - - 3.48 - - - - - - - - - - - - - - - 3.18
Smo428828 (PACid_15416988)
3.58 - - - - - - - - - - - - 4.32 - - - - - - - - - - - - - - - - - -
Smo430174 (PACid_15417844)
0.65 - - - - - - 0.32 - 0.21 - 0.39 - 2.57 1.5 2.75 - - - - 1.95 - - - - - - - - - 2.88 -
Smo431729 (PACid_15402864)
2.38 3.29 - 1.41 - - - - - - 2.7 1.81 - - - 2.12 - - - - - - - - - - - - - - - -
Smo440224 (PACid_15403306)
-0.29 -0.66 -1.21 -1.14 -1.12 -1.04 -1.03 -0.71 -0.53 -0.62 -0.88 -0.86 -0.23 0.32 -1.63 -0.18 -0.61 -0.07 1.49 0.79 0.21 0.35 -0.7 -0.39 1.09 0.15 -0.33 -0.54 -0.15 0.0 1.62 1.14
Smo441370 (PACid_15407075)
2.79 - - - - - - - 3.36 - - - - - - - - 3.89 - - - - - - - - - - - - - -
Smo444739 (PACid_15418968)
-0.37 -0.94 -1.46 -0.73 -0.6 -1.76 -0.1 -1.09 0.58 -0.15 -0.3 -1.08 0.58 -1.11 0.25 -1.12 0.52 -2.38 1.34 - -0.21 1.13 -0.02 -0.51 0.68 0.12 -1.01 -0.39 0.58 0.76 0.48 1.41
Smo5625 (PACid_15420219)
3.74 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.22 -
Smo71365 (PACid_15422651)
0.12 -0.35 -0.59 -0.12 -0.01 0.03 0.52 0.68 0.48 0.62 0.4 0.23 0.11 -0.68 -0.48 0.17 -0.26 -0.12 0.64 -0.46 -2.71 1.26 0.13 0.02 -4.21 -0.65 -1.09 -1.47 -0.07 -0.31 0.26 0.42
Smo74408 (PACid_15409756)
-0.67 -0.7 -0.6 -0.26 -0.27 0.29 0.3 0.21 0.25 0.13 -0.25 -0.75 -1.05 -1.36 0.13 -0.79 -0.9 -1.23 -0.54 0.16 -0.0 1.17 -0.38 -0.27 -0.77 -0.15 0.6 0.64 -1.22 -0.96 1.72 1.12
Smo76236 (PACid_15414244)
0.01 -0.38 -1.39 -0.41 -0.24 0.35 0.49 0.57 0.35 0.51 -0.01 -0.62 -1.79 -4.21 -1.83 -0.85 -0.44 0.15 -0.13 -0.69 -1.59 0.16 -0.08 -0.64 -1.59 -0.87 0.97 0.32 0.03 0.32 1.48 1.58
Smo77288 (PACid_15417200)
-0.76 -0.85 -1.24 -1.23 -1.04 -1.3 -1.52 -1.24 -1.17 -1.15 -1.08 -1.25 -1.07 0.56 1.0 -0.17 0.58 0.42 0.92 -0.34 -0.3 -0.74 0.08 0.71 1.51 -0.7 -1.14 -1.37 0.58 0.63 1.25 1.24
Smo78760 (PACid_15401542)
- - - - - - - - - - - - - - - 1.88 1.59 2.4 - - - - - - - - - - 1.79 1.73 3.33 1.69
Smo86646 (PACid_15402101)
1.8 -0.2 1.2 0.08 1.09 0.09 - - - - 1.74 - - 2.72 - - 1.01 - -0.06 - - - 0.08 -0.13 - 1.2 - - 0.99 0.97 - -
Smo90383 (PACid_15411913)
- - - 1.04 - - - - -1.28 - - - - 1.47 -1.61 - - - 3.16 - - - - - 2.92 - 2.32 - 0.13 1.72 -0.9 -
Smo94230 (PACid_15422662)
-0.18 -2.0 -1.92 -1.4 -1.51 -0.61 -0.4 0.31 -0.88 -0.34 -0.13 -0.4 -1.89 -0.39 0.54 -0.75 -0.85 1.14 1.06 -0.83 -1.48 1.73 -1.07 -1.02 -0.21 -1.38 -0.09 -2.04 -0.28 -0.15 1.55 2.0
Smo96597 (PACid_15408604)
0.6 -0.07 -0.6 -0.8 -1.08 -0.92 -0.65 -0.74 -0.62 0.42 -0.19 -0.17 -1.14 0.82 -1.01 0.55 0.16 -0.42 -0.19 -3.84 1.24 -1.86 -0.89 -1.49 0.89 -0.35 -1.34 -1.99 0.3 0.04 2.19 0.75

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.