Heatmap: Cluster_155 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101378 (PACid_15402460)
0.18 0.44 0.42 0.47 0.11 0.34 0.42 -0.28 0.14 -0.1 -0.45 0.04 -3.28 -2.5 -3.15 -2.62 1.34 1.04 -0.51 -1.33 1.23 -0.9 -0.12 -0.79 0.25 -3.79 -1.66 -1.24 0.82 0.86 0.39 -0.08
Smo103635 (PACid_15410625)
-0.28 -0.1 -0.25 -0.61 0.22 0.15 -0.19 -0.94 -0.31 -0.7 0.03 -0.79 -1.78 -7.03 -0.79 -1.97 0.95 1.53 1.01 1.15 -0.66 2.3 -2.81 -4.1 -0.02 -1.87 -0.94 -0.15 0.15 0.25 -0.77 -0.92
Smo104218 (PACid_15410436)
0.06 -0.14 -0.11 -0.26 -0.43 -0.42 -0.26 -0.36 -0.08 -0.03 0.12 0.2 -4.41 -2.71 -3.81 -2.55 1.22 0.72 -1.41 -0.18 1.36 -1.98 -0.04 -0.68 -0.06 -1.39 -1.08 -0.99 1.17 0.95 1.15 1.13
Smo109461 (PACid_15404213)
0.06 0.16 0.11 0.19 0.14 0.36 0.2 0.12 0.11 -0.15 0.03 -0.11 -0.51 -1.17 -0.8 -0.45 0.14 -0.04 -0.07 -0.7 0.05 -0.02 0.04 -0.13 0.65 -0.41 0.62 0.66 -0.04 0.04 -0.35 -0.37
Smo113536 (PACid_15417014)
-0.7 -1.19 -0.67 -0.61 -0.34 -0.26 -0.09 0.14 0.09 -0.23 -0.2 -0.54 -0.12 -1.51 -1.35 0.48 -0.2 0.66 0.65 -0.06 0.19 0.5 0.14 0.23 1.32 -0.69 -0.39 -0.37 0.51 0.64 0.04 -0.02
Smo117313 (PACid_15404676)
0.27 0.23 0.35 0.22 0.73 0.27 0.11 0.15 0.03 -0.24 -0.14 -0.03 -2.13 -1.84 -0.8 -1.53 0.31 0.29 -0.69 -0.57 0.17 -0.34 0.06 -0.02 1.23 -0.98 0.56 0.81 -0.07 0.14 -0.7 -0.97
Smo121297 (PACid_15416217)
-0.28 -0.45 -0.38 -0.71 -0.18 -0.37 0.01 -0.1 -0.11 -0.17 0.22 -0.22 -1.11 -1.68 -1.98 -0.83 0.42 1.25 -0.03 -1.31 1.31 1.23 0.24 0.03 -0.68 -0.99 -0.49 -0.65 0.7 0.51 0.29 0.2
Smo123503 (PACid_15401784)
-0.09 -0.2 0.22 0.08 0.28 0.44 0.3 0.52 0.41 0.28 0.16 -0.27 -2.89 -2.09 -0.42 -1.33 0.2 -0.57 0.18 -1.35 0.55 -0.12 -0.21 -0.47 1.03 -0.46 0.07 0.26 0.3 0.44 -0.12 -0.2
Smo125253 (PACid_15405401)
-0.05 -0.1 -0.17 -0.46 1.09 -0.99 -0.56 -0.93 -1.16 -0.33 -1.53 -1.48 -3.08 -1.81 -5.66 -3.97 1.63 2.14 -2.36 - 1.23 2.14 -0.53 -0.38 0.74 -2.98 - -2.1 0.55 0.6 -0.62 -0.71
Smo126915 (PACid_15413736)
-0.2 -0.16 -0.32 -0.31 -1.62 -0.67 -1.0 -1.31 -0.01 -0.47 -0.71 0.38 -2.17 -2.22 -2.88 -2.34 0.86 1.88 -1.08 -1.98 2.05 1.48 -1.33 -0.57 -2.12 -1.32 -3.37 -2.49 0.84 0.47 0.95 1.1
Smo143891 (PACid_15418711)
-0.22 -0.58 -0.39 -0.42 -0.16 -0.07 0.29 0.28 0.32 -0.02 0.11 -0.14 -2.3 -1.61 -1.22 -2.14 0.6 1.05 -0.79 0.78 0.39 1.07 -0.63 -0.85 -0.54 -1.48 0.42 0.34 0.53 0.42 0.35 0.1
Smo160411 (PACid_15421008)
0.74 1.05 1.11 0.87 0.65 0.28 0.03 -1.03 -0.9 -1.0 -0.34 0.34 -5.74 -2.23 -4.09 -2.82 0.96 0.37 -1.27 -1.75 1.9 -2.22 0.15 -0.3 -0.29 -2.76 -1.16 -0.75 0.32 0.28 0.08 0.14
Smo166148 (PACid_15414172)
-1.17 -0.75 -1.05 -1.06 -1.19 -0.99 -1.41 -2.37 -1.86 -1.96 -1.68 -1.13 -3.74 -2.38 -2.09 -1.92 1.08 3.18 1.68 -1.03 -0.75 1.93 -3.3 -1.36 -2.62 -3.6 -1.99 -2.24 0.53 0.62 0.09 0.93
Smo166255 (PACid_15414937)
0.29 -0.29 -0.62 -0.35 -0.2 -0.08 -0.27 -0.11 -0.12 -0.17 -0.16 -0.08 -0.88 -1.41 -0.3 -0.5 0.07 0.31 0.11 0.65 0.6 0.75 -0.26 -0.52 1.11 0.06 0.37 0.5 0.02 0.15 -0.74 -0.78
Smo17067 (PACid_15417100)
0.07 0.14 0.15 0.24 -0.05 0.34 0.3 0.02 0.2 0.09 -0.07 0.06 -1.34 -0.83 -0.97 -1.27 0.7 1.26 -0.65 0.29 0.34 0.41 -0.31 -0.63 -0.17 -1.71 -0.65 -0.53 0.43 0.31 0.06 -0.13
Smo19706 (PACid_15405779)
0.49 -0.0 0.04 -0.48 -0.69 -1.03 -0.46 -0.31 0.19 0.27 0.77 0.69 -3.63 -2.85 -4.51 -2.34 0.65 0.76 -1.33 -0.23 1.7 -3.12 -0.33 -0.5 0.89 -0.76 -0.92 -0.56 0.9 0.71 0.42 0.27
Smo230318 (PACid_15413058)
0.1 0.4 0.4 0.62 0.45 0.89 0.56 0.48 0.7 0.43 0.19 0.03 - -8.96 -5.59 -4.56 1.18 1.39 0.08 -1.34 1.37 -1.22 -2.37 -3.7 -2.1 -1.12 -1.05 -0.99 0.21 0.29 -0.07 -0.27
Smo236715 (PACid_15411318)
-0.67 -0.27 -0.22 -0.39 -1.52 -0.64 -0.11 -0.39 0.4 -0.99 -0.34 -0.6 -2.56 -1.21 -2.19 -0.73 1.21 -4.79 -0.7 -0.19 2.34 -1.61 0.3 -0.46 -0.65 -1.39 -1.19 -0.93 1.27 1.08 0.77 1.11
Smo27993 (PACid_15408868)
-0.32 -0.13 0.13 -0.07 -0.19 -0.12 -0.02 -0.31 -0.02 -0.06 -0.11 -0.0 -6.73 -3.37 -5.1 -3.19 1.19 0.91 -0.86 -0.08 1.61 -2.47 0.24 -0.52 0.79 -2.83 -1.16 -0.88 1.12 1.02 0.44 0.45
Smo28797 (PACid_15410358)
0.79 0.05 -0.45 -0.47 -1.07 -0.96 -0.52 0.13 0.32 0.73 0.82 1.5 -2.46 -3.9 -4.04 -3.03 0.14 0.32 -1.88 0.89 1.4 0.02 -0.84 -1.53 0.72 -0.7 -1.64 -1.78 0.76 0.21 0.4 -0.0
Smo29306 (PACid_15409979)
-0.33 -0.59 -0.36 -0.4 -0.43 -0.38 -0.23 -0.15 -0.0 -0.04 -0.04 0.01 -6.17 -3.94 -6.25 -3.11 1.49 1.34 -0.99 -1.39 1.36 -2.61 0.25 -0.52 -1.52 -3.08 -2.06 -2.06 1.56 1.32 1.13 1.12
Smo36999 (PACid_15413260)
0.46 0.18 0.08 -0.48 -1.16 -1.16 -0.54 -0.59 -0.06 0.44 0.71 0.93 -5.99 -5.54 -5.69 -4.13 0.88 0.21 -0.52 -1.95 2.44 -5.1 -1.02 -2.05 -0.22 -1.61 -1.47 -1.3 0.99 0.87 0.88 0.78
Smo38265 (PACid_15413672)
-0.45 -0.36 -0.0 -0.05 0.06 0.26 0.34 0.29 0.14 0.24 0.0 -0.25 -0.65 -1.09 -1.6 -0.16 0.68 0.85 -0.17 -1.32 0.23 -1.56 -0.17 -0.43 -0.36 -0.59 0.11 0.23 0.78 0.69 0.43 0.19
Smo39422 (PACid_15417962)
-0.3 -0.21 -0.0 -0.09 0.02 0.15 0.21 0.13 0.14 -0.18 -0.01 -0.18 -3.04 -3.73 -3.58 -2.2 0.73 1.32 -0.8 -0.54 1.11 0.43 -0.09 -0.57 0.69 -2.43 0.04 -0.27 0.77 0.6 0.34 -0.04
Smo39423 (PACid_15417963)
-0.05 0.27 -0.45 -0.1 -0.16 0.27 0.22 -0.23 -0.1 -0.54 -0.69 -0.41 -2.35 -2.45 -2.55 -1.37 0.95 1.17 0.74 -0.02 1.24 -0.98 -0.26 -0.57 0.96 -1.89 -0.5 -0.1 0.9 0.74 -0.33 -0.46
Smo407858 (PACid_15421953)
-0.45 -0.6 -0.46 -0.55 -0.04 -0.67 -0.54 -0.46 -0.55 -0.76 -0.38 -0.44 -1.13 -2.11 -2.35 -0.7 0.45 -0.02 0.75 1.09 1.09 0.05 0.06 -0.3 1.18 0.54 -0.07 0.28 0.56 0.53 0.27 -0.49
Smo415798 (PACid_15422677)
-0.3 -0.73 -0.55 -0.21 -0.52 0.04 0.18 -0.48 0.17 -0.38 -0.02 -0.65 -1.06 -2.66 0.44 -0.89 0.74 1.49 0.74 -0.93 -0.1 0.55 0.11 -0.16 -0.07 -1.85 -1.1 -0.87 0.5 0.74 0.67 0.52
Smo417761 (PACid_15406114)
-1.06 -0.72 -1.05 -0.64 -0.23 -0.53 0.34 -0.05 -0.14 -0.43 -0.22 -0.55 -0.13 -2.21 -1.62 0.68 -0.08 0.42 1.48 -2.42 0.13 1.02 -0.13 0.14 1.31 -0.21 -2.57 -1.92 0.39 0.19 0.41 0.85
Smo419302 (PACid_15408770)
-0.0 0.89 0.27 0.51 0.34 -0.05 -0.28 -1.08 -0.36 -0.78 -0.86 -0.78 -4.66 -4.98 -5.51 -3.09 1.06 -0.81 -0.89 -3.39 1.79 -4.84 0.56 -0.38 0.13 -1.25 -0.06 0.3 0.06 -0.18 1.39 1.58
Smo421204 (PACid_15414264)
0.68 0.85 0.79 0.48 0.59 0.62 0.43 0.57 0.79 0.68 0.74 0.65 -1.09 -0.66 -1.69 -2.4 0.69 1.54 -2.48 - -6.51 -5.29 -0.21 -0.14 0.3 -0.91 -1.34 -1.75 -0.11 -0.4 -1.14 -1.5
Smo423144 (PACid_15419354)
0.48 0.67 0.74 0.75 0.4 0.21 0.1 -0.52 -0.22 -0.19 -0.1 0.43 -6.2 -2.54 -5.04 -2.72 1.21 0.1 -0.87 -0.63 1.2 -3.01 0.37 -0.15 -0.13 -1.59 -1.05 -0.63 0.73 0.64 0.25 0.07
Smo444370 (PACid_15416011)
0.25 0.48 0.65 0.57 0.4 0.26 0.13 -0.64 -0.67 -0.91 -0.54 0.1 -5.4 -2.76 -4.46 -2.96 0.96 0.08 -0.93 -0.59 0.94 -3.23 0.28 -0.28 1.34 -0.31 0.1 0.67 0.5 0.44 -0.02 -0.27
Smo47719 (PACid_15421463)
-0.0 0.46 0.21 0.15 0.25 0.56 0.57 0.39 -0.16 0.07 -0.22 -0.28 -1.11 -1.39 -1.75 -0.78 -0.18 0.06 0.11 -0.6 -0.4 -0.04 -0.24 -0.55 0.64 -0.26 0.87 0.86 -0.11 -0.13 -0.2 -0.21
Smo49217 (PACid_15423517)
-0.19 -0.05 -0.02 -0.2 -0.18 -0.19 0.3 -0.36 -0.16 -0.43 -0.39 -0.26 -2.83 -2.31 -3.3 -2.14 1.12 1.32 -0.67 -0.84 1.47 -1.78 -0.28 -0.93 1.57 -2.66 -1.1 -0.96 0.73 0.52 0.7 0.62
Smo58541 (PACid_15407832)
-0.46 -0.33 -0.16 -0.1 -0.35 -0.13 -0.04 -0.39 -0.27 -0.59 -0.65 -0.51 -0.29 -0.34 -0.69 0.08 1.14 0.97 0.52 0.35 0.46 -1.41 -0.17 -0.34 0.43 -0.96 -0.61 0.06 0.93 0.75 -0.03 -0.58
Smo58660 (PACid_15408691)
-0.26 -0.54 -0.39 -0.47 -0.58 -0.16 -0.05 0.12 0.33 0.23 0.4 0.12 -2.54 -2.36 -1.7 -2.08 0.88 0.56 -0.57 0.29 1.36 0.44 -0.43 -1.3 -0.05 -0.53 -0.64 -0.66 0.84 0.71 0.62 0.55
Smo59774 (PACid_15412492)
-0.17 -0.38 -0.13 -0.36 -0.48 -0.47 -0.4 -0.2 -0.11 -0.2 0.1 -0.11 -5.51 -3.38 -4.78 -2.97 1.06 0.71 -0.89 0.61 1.86 -2.0 0.09 -0.64 0.84 -2.45 -0.79 -0.85 0.96 0.68 0.79 0.81
Smo68615 (PACid_15415862)
0.07 -0.3 -0.73 -0.24 -0.26 0.13 -0.04 0.2 0.07 -0.04 -0.13 -0.37 -0.45 -0.43 0.38 -0.1 0.37 0.83 0.3 -0.28 -1.0 0.38 0.03 0.14 -0.09 -0.37 -0.07 -0.19 0.48 0.45 -0.17 -0.02
Smo69311 (PACid_15416419)
-0.42 -0.29 -0.56 -0.28 -0.59 -0.06 -0.1 -0.26 0.19 -0.29 -0.35 -0.04 -2.36 -1.79 -3.27 -2.15 1.16 1.51 0.09 0.7 0.45 0.15 0.17 -0.33 -0.76 -3.64 -1.43 -1.66 0.9 0.94 0.89 0.89
Smo69832 (PACid_15420324)
-0.24 -0.26 -0.31 -0.46 -1.07 -0.48 -0.18 -0.14 -0.16 0.07 0.13 -0.06 -0.05 -1.2 -1.84 0.23 0.03 0.76 0.24 -0.25 1.27 0.75 0.14 0.06 0.95 -1.86 -2.27 -1.52 0.46 0.54 0.22 0.27
Smo71469 (PACid_15423353)
-0.89 -1.36 -0.98 -1.09 -0.03 -0.22 -0.05 0.19 0.08 -0.07 -0.55 -0.73 -0.88 -2.22 -1.15 0.02 0.07 0.84 0.75 -4.03 1.46 -0.6 0.4 0.08 -1.34 -0.34 0.19 0.32 1.04 0.72 1.06 -0.14
Smo71654 (PACid_15402569)
-0.63 -0.41 -0.24 -0.41 0.07 -0.15 0.42 -0.22 0.41 0.26 0.09 -0.57 -1.73 -2.87 -1.1 -2.58 0.93 0.63 0.29 -0.96 1.63 0.78 -0.92 -1.63 -1.06 -1.91 -0.29 -0.13 0.7 0.95 0.47 0.28
Smo73051 (PACid_15403767)
0.24 -0.12 0.68 0.15 -0.4 -0.14 0.03 0.57 0.15 -0.01 -1.14 -0.17 -6.28 -4.3 -5.32 -3.47 0.94 1.49 -0.04 -1.36 -0.56 -2.6 -0.12 -0.85 0.61 -1.25 0.78 0.95 1.07 0.79 -0.03 -0.81
Smo7638 (PACid_15403702)
0.36 0.31 0.15 0.28 0.14 0.33 0.43 0.36 0.55 0.66 0.37 0.55 -3.19 -2.41 -1.88 -2.69 0.69 1.72 -0.6 -1.94 -0.51 -2.73 -0.16 -0.76 0.3 -2.74 -0.98 -0.9 0.77 0.57 -0.06 -0.14
Smo76553 (PACid_15416461)
-0.98 -0.53 -0.57 -0.5 -1.26 -0.48 -0.28 -2.75 -0.27 -1.37 -0.81 -0.58 -2.98 -6.25 -1.1 -2.31 1.69 2.41 -0.72 -0.93 -0.11 1.96 -0.89 -2.7 -1.54 -4.91 -1.35 -1.47 1.1 1.13 0.91 0.62
Smo77819 (PACid_15421507)
-0.48 -0.59 -0.3 -0.52 -0.19 -0.16 -0.13 -0.39 -0.49 -0.66 -0.44 -0.79 -1.98 -2.27 -2.67 -1.2 1.13 1.19 0.01 0.12 0.98 1.07 -0.41 -0.75 -1.2 0.1 -0.05 0.33 0.92 0.79 0.52 0.22
Smo79335 (PACid_15401315)
0.14 -0.77 -0.91 -0.28 -0.24 -0.01 -0.09 -0.14 -0.09 -0.12 0.14 -0.41 0.29 -0.64 -0.07 0.67 -0.07 0.74 0.84 -4.56 -0.72 0.78 -0.05 0.03 0.38 -0.47 -0.15 -0.79 -0.31 -0.14 0.6 0.72
Smo81712 (PACid_15410555)
-0.7 -2.62 -2.03 -0.75 0.55 0.36 0.62 0.79 -0.38 -0.18 -0.01 -0.99 -1.44 -2.77 -1.48 -1.21 0.02 0.21 -0.31 -1.2 1.13 0.73 0.35 -0.31 1.25 -0.93 -0.31 0.18 0.66 0.64 0.55 0.19
Smo85905 (PACid_15401350)
- - - - - - - - - - - - -1.65 - - -1.04 1.83 2.0 0.15 1.55 1.29 1.1 0.56 0.19 1.78 - - - 1.32 1.02 1.13 1.18
Smo89955 (PACid_15413273)
-0.02 0.15 0.16 -0.11 -0.16 0.25 0.16 0.16 0.17 0.16 -0.25 -0.38 -1.92 -1.38 -0.7 -1.35 1.24 1.3 0.02 -5.13 0.55 -3.12 -0.08 -1.1 0.45 -1.65 -0.51 -0.08 0.95 0.77 0.31 -0.04
Smo90070 (PACid_15409565)
-1.41 -1.78 -1.12 -0.95 -1.07 0.44 -0.44 -0.6 -0.83 -0.24 -0.05 -0.01 -2.07 -2.85 0.42 -0.75 0.22 1.41 -0.02 -0.24 - 0.77 -0.14 -0.12 0.54 -0.71 0.43 0.4 0.88 0.71 1.01 1.02
Smo91525 (PACid_15416229)
-0.51 0.4 -0.71 -1.21 -1.44 -0.78 -1.19 -3.42 -4.35 -4.5 -4.31 -1.76 -3.64 -3.28 -3.33 1.31 1.53 1.54 0.77 -0.87 2.45 -3.71 -1.85 -3.61 1.08 -2.53 0.16 0.7 0.74 1.66 -1.86 -2.61
Smo92382 (PACid_15417742)
-0.3 -0.59 -0.53 -1.12 -1.64 -1.78 -2.1 -2.28 -2.35 -2.39 -2.44 -1.36 -6.38 -6.12 -4.72 -5.11 1.63 1.82 1.14 -0.06 1.82 -2.97 0.3 -0.36 -0.36 -1.94 -2.3 -2.09 1.35 1.46 0.94 1.65
Smo94153 (PACid_15421897)
-0.96 -0.98 -1.63 -1.34 -1.86 -1.1 -0.11 -0.09 0.09 -0.07 -0.13 -0.05 -1.31 -2.56 -2.11 -1.13 0.58 0.86 -0.44 1.76 1.22 1.28 -0.69 -1.49 0.24 0.11 0.13 0.31 0.62 0.37 0.26 -0.52
Smo96877 (PACid_15410974)
-0.69 -0.76 -0.73 -0.63 -0.99 -0.52 -0.57 -0.07 -0.09 -0.34 -0.26 -0.48 -0.8 -2.08 -2.1 -0.41 0.13 0.21 0.09 0.47 1.03 0.63 0.2 0.18 1.44 0.26 -0.62 -0.45 0.42 0.41 0.63 0.63
Smo98081 (PACid_15410701)
-0.17 -0.06 -0.1 0.01 0.14 0.21 -0.01 0.03 -0.29 -0.5 -0.56 -0.45 -1.21 -1.27 -1.89 -0.85 0.63 0.77 0.27 -0.46 0.79 -0.22 0.22 -0.12 0.32 -0.3 0.13 0.32 0.51 0.55 0.18 0.09

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.