Heatmap: Cluster_165 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo103038 (PACid_15405929)
-0.16 0.22 0.37 0.53 0.65 0.53 0.63 0.58 0.54 0.44 0.41 0.09 -0.38 -0.36 -0.68 -0.14 0.15 -1.02 0.07 -3.9 -4.05 -4.18 0.09 -0.11 -1.76 0.15 0.62 1.02 0.15 0.23 -1.35 -1.41
Smo107344 (PACid_15419977)
0.0 0.07 0.44 0.46 0.33 0.61 0.8 0.86 0.74 0.51 0.4 0.21 -0.56 -0.68 0.1 -0.33 -0.01 -1.01 -0.22 -4.99 -1.98 -4.58 -0.27 -0.41 -1.5 -0.4 0.75 0.96 0.12 0.11 -0.91 -1.18
Smo115254 (PACid_15420595)
-0.21 -0.16 -0.12 0.07 0.42 0.77 1.05 0.82 0.65 0.46 0.03 -0.1 -0.64 -1.08 0.07 -0.17 -0.07 -0.48 0.39 -7.1 -3.34 -5.43 0.28 -0.15 -2.48 -0.1 0.57 0.71 0.12 0.31 -0.35 -0.17
Smo115473 (PACid_15422038)
-0.29 -0.11 -0.07 0.19 0.24 0.19 0.43 0.27 0.45 0.27 0.03 -0.09 0.13 -0.3 0.95 0.13 -0.14 -0.27 0.25 -0.71 -6.94 -2.15 0.1 0.03 -3.92 0.33 0.43 0.35 0.14 0.06 -0.07 -0.12
Smo118636 (PACid_15410085)
-0.15 0.26 -0.07 0.21 0.3 0.43 0.31 0.41 0.28 0.17 -0.14 -0.13 -0.49 -0.18 0.39 -0.24 -0.0 -0.65 -0.15 -1.67 -2.21 -3.17 -0.26 -0.47 -0.28 0.52 1.34 1.41 -0.28 -0.11 -1.29 -1.35
Smo121195 (PACid_15415500)
-0.64 -0.32 -0.14 0.01 0.16 0.49 0.38 0.55 -0.02 0.02 -0.39 -0.37 -0.19 -0.79 0.97 -0.01 -0.22 -1.01 0.12 -2.21 -2.43 -0.17 -0.11 0.18 0.17 0.6 0.96 1.03 -0.27 -0.22 -0.63 -0.65
Smo126954 (PACid_15413846)
0.06 -0.08 0.1 0.32 0.41 0.52 0.6 0.57 0.51 0.42 0.34 0.12 -0.99 -0.32 0.16 -0.67 0.45 -0.65 -0.48 -2.37 -2.9 -3.35 0.27 -0.02 -1.15 -0.23 0.55 0.66 0.27 0.38 -0.35 -0.36
Smo127003 (PACid_15409649)
0.1 0.26 0.28 0.51 0.53 0.57 0.47 0.62 0.4 0.41 0.25 0.27 -0.11 -0.28 -0.41 0.02 -0.16 -0.81 -0.1 -1.79 -1.79 -2.5 -0.4 -0.54 -0.72 0.09 0.47 0.65 -0.04 -0.02 -0.37 -0.47
Smo128885 (PACid_15418948)
-1.12 -0.71 -0.36 -0.12 0.25 0.43 0.89 0.82 0.5 0.49 0.24 -0.35 -0.01 0.05 1.06 0.12 0.01 -0.61 -0.29 -1.02 -2.45 -1.16 -0.33 -0.37 -0.27 0.06 0.78 0.37 0.05 -0.04 -1.22 -0.75
Smo132867 (PACid_15408441)
0.0 0.12 0.31 0.53 0.64 0.72 0.54 0.76 0.55 0.36 -0.04 -0.21 -0.03 -0.87 -0.33 0.03 -0.31 -0.76 0.21 - - - 0.01 -0.07 -1.72 0.26 0.81 0.9 -0.1 0.02 -0.71 -0.4
Smo146160 (PACid_15421955)
-0.05 -0.23 -0.05 0.11 0.45 0.49 0.66 0.71 0.68 0.43 0.32 0.13 -1.35 -0.83 -0.12 -1.03 0.09 -0.71 -0.17 -1.46 -1.92 -1.31 -0.41 -0.33 -0.28 0.42 0.82 0.9 0.4 0.34 -0.93 -1.14
Smo151539 (PACid_15417645)
-0.18 -0.11 -0.14 0.21 0.29 0.4 0.43 0.4 0.22 0.06 -0.23 -0.4 -0.18 -0.13 0.31 -0.05 -0.13 -0.25 0.33 -3.47 -0.68 -2.68 -0.16 -0.14 -0.33 0.59 1.04 1.09 -0.25 -0.19 -0.71 -0.7
Smo163802 (PACid_15410614)
0.01 0.14 0.05 0.33 0.33 0.31 0.51 0.48 0.49 0.47 0.41 0.23 -0.47 -0.55 -0.2 -0.28 -0.05 -1.18 -0.17 -5.8 -5.18 -3.69 0.3 0.47 -1.9 -0.36 0.68 0.89 0.08 0.25 0.12 0.03
Smo166499 (PACid_15416456)
-1.0 -0.62 -0.27 -0.19 0.18 0.14 0.5 0.56 0.46 0.28 0.03 -0.37 -0.04 -0.37 1.2 -0.25 -0.48 -0.84 0.15 -1.78 -1.93 0.23 -0.27 -0.08 -1.14 0.6 0.93 1.03 -0.22 -0.09 -0.9 -0.7
Smo167542 (PACid_15420054)
-0.01 -0.02 -0.2 -0.01 0.2 0.15 0.01 0.22 0.0 -0.24 -0.14 -0.11 -0.41 0.06 0.61 -0.07 -0.26 -0.41 0.32 -2.58 -1.38 -1.3 0.41 0.3 0.05 0.41 0.95 1.07 -0.2 -0.06 -0.77 -0.72
Smo168153 (PACid_15419933)
-0.62 -0.3 0.08 0.34 0.68 0.78 0.82 0.6 0.1 -0.38 -0.58 -0.75 -1.95 -0.9 -0.26 -1.48 0.33 -0.15 -0.67 -3.69 -1.98 -2.03 -0.39 -0.72 -0.38 0.01 1.72 1.57 -0.37 -0.42 0.13 0.17
Smo170457 (PACid_15405991)
-0.92 -0.37 0.07 0.24 0.86 1.01 0.91 0.67 0.24 -0.53 -0.59 -1.2 -0.82 -0.78 0.41 -0.76 0.06 -0.9 -0.39 -5.49 -2.98 -3.08 -0.55 -0.7 -0.36 -0.44 1.73 1.93 -0.16 0.03 -1.46 -1.71
Smo174634 (PACid_15419227)
-0.66 -0.68 -0.44 -0.27 0.38 0.35 0.56 0.57 0.16 -0.07 -0.31 -0.47 -0.04 -0.91 0.95 0.23 0.04 -0.48 0.35 -2.0 -2.66 -1.69 0.03 0.26 -0.54 0.36 0.84 1.16 0.42 0.53 -1.23 -1.89
Smo231453 (PACid_15416787)
-0.08 0.17 0.37 0.73 0.67 0.43 0.5 0.4 0.55 0.53 0.42 0.18 -1.21 -0.95 0.16 -0.53 0.05 -1.11 -0.08 -4.62 -1.97 -8.76 -0.11 -0.35 -1.1 -0.27 0.87 1.01 -0.26 -0.01 -0.35 -0.06
Smo30768 (PACid_15416367)
-0.73 -0.29 -0.36 0.11 0.39 0.44 0.46 0.7 0.41 0.21 -0.09 -0.45 -0.08 -0.69 0.35 0.35 -0.42 -0.84 0.72 -2.21 -3.18 -2.34 -0.06 0.13 -0.23 0.72 0.91 0.78 -0.04 0.21 -0.92 -0.97
Smo32076 (PACid_15416911)
-0.14 0.39 0.56 0.62 0.65 0.5 0.48 0.34 0.3 0.25 0.22 0.08 -0.34 -0.34 0.07 -0.22 0.28 -0.51 -0.15 -4.44 -2.83 -2.33 0.45 0.22 -0.65 -0.23 0.25 0.38 0.01 0.2 -0.74 -1.0
Smo328 (PACid_15419230)
-0.28 -0.5 -0.2 -0.01 0.18 0.5 1.0 1.05 0.57 0.55 0.09 0.08 -0.49 -0.11 0.51 -0.07 -0.5 -0.31 -0.06 - -4.61 -6.93 -0.35 -0.78 -2.84 0.26 0.95 1.09 -0.19 -0.07 -0.27 -0.07
Smo402370 (PACid_15403522)
-0.16 -0.12 -0.64 -0.07 0.15 0.52 0.71 0.64 0.56 0.29 -0.1 -0.1 -0.14 -0.9 0.37 -0.22 -0.36 -1.51 0.45 -0.45 -0.64 -2.81 0.18 0.27 -0.23 0.07 0.65 0.64 -0.14 -0.1 -0.48 -0.42
Smo402672 (PACid_15405870)
0.07 0.21 0.05 0.16 0.43 0.42 0.48 0.42 0.31 0.27 0.24 0.35 -0.72 -0.39 0.28 -0.39 -0.29 -0.66 -0.24 -3.0 -0.72 -3.7 -0.61 -1.03 -0.99 0.59 1.22 1.5 -0.1 -0.09 -1.58 -1.49
Smo404484 (PACid_15410321)
-0.54 -0.39 -0.48 -0.14 0.76 0.46 0.53 0.93 0.65 0.19 -0.07 -0.2 0.01 -1.08 1.05 0.53 -0.79 -1.28 0.79 -1.69 -3.02 -4.29 -0.49 -0.32 -1.79 0.58 0.84 0.8 -0.08 0.13 -1.37 -0.87
Smo405512 (PACid_15413919)
-1.15 -0.71 -0.19 0.33 0.78 0.89 1.07 1.07 0.42 -0.12 -0.54 -0.98 -2.86 -2.07 -1.44 -2.18 0.06 -0.35 -1.1 -3.25 -2.28 -2.99 -0.55 -1.15 0.49 -0.54 1.79 1.65 -0.3 -0.37 0.18 0.4
Smo408505 (PACid_15422480)
-0.31 0.03 0.12 0.2 0.5 0.49 0.56 0.55 0.18 0.08 -0.08 -0.2 -0.46 -1.06 0.2 -0.21 -0.14 -0.34 0.52 -2.04 -2.2 -4.51 0.17 0.19 -0.16 0.31 0.85 0.7 0.04 0.19 -0.62 -0.58
Smo411103 (PACid_15406167)
-0.56 -0.4 -0.23 -0.05 0.54 0.61 0.64 0.65 0.22 0.06 -0.27 -0.43 0.09 -1.16 0.53 0.04 -0.46 -0.75 0.55 -0.91 -3.68 -3.03 0.12 0.21 -1.69 0.62 1.12 1.23 -0.12 0.11 -1.56 -1.31
Smo412438 (PACid_15411559)
-0.38 -0.18 -0.14 -0.14 0.23 -0.1 0.04 0.04 0.13 0.11 0.4 0.17 0.3 0.11 1.1 0.11 -0.54 -0.15 0.32 -0.79 -1.61 - -0.06 0.38 -1.01 0.78 0.57 0.48 -0.41 -0.18 -0.98 -0.05
Smo412499 (PACid_15411699)
0.06 0.26 0.26 0.45 0.44 0.46 0.52 0.52 0.22 0.26 0.07 -0.19 -0.09 -0.71 0.59 -0.06 0.27 -0.49 0.2 -5.19 -3.93 -1.86 0.01 -0.26 -0.57 -0.07 0.56 0.68 0.15 0.26 -0.87 -1.11
Smo418902 (PACid_15410519)
-0.27 0.13 0.26 0.57 0.48 0.5 0.63 0.4 0.28 0.21 0.05 -0.09 0.21 -0.52 0.33 0.12 0.0 -0.98 0.25 -8.83 -2.57 -3.37 0.46 0.41 -1.92 -0.01 0.47 0.77 0.03 0.28 -0.88 -1.37
Smo422902 (PACid_15422374)
-0.52 -0.23 0.07 0.14 0.61 0.48 0.48 0.58 0.63 0.44 0.18 -0.01 -0.47 -0.95 0.98 -0.35 -0.42 -0.96 -0.04 -0.83 -0.68 -1.99 -0.36 -0.33 -2.43 1.1 0.68 0.91 -0.42 -0.09 -1.55 -1.45
Smo431844 (PACid_15403655)
-0.62 -0.39 -0.27 0.2 0.51 0.62 0.84 0.86 0.41 0.41 -0.03 -0.29 -0.38 -1.37 0.24 -0.28 -0.09 -0.48 -0.02 -5.3 -3.33 -5.12 0.17 0.27 -2.92 0.9 1.08 1.17 0.1 0.03 -1.13 -1.32
Smo431872 (PACid_15403719)
-0.02 -0.08 -0.23 0.52 0.68 0.55 0.57 0.51 0.35 -0.12 -0.28 -0.12 -0.23 0.37 0.62 0.27 -0.16 -0.59 0.63 - -4.01 -5.31 0.05 0.02 -1.88 0.28 0.86 0.59 -0.36 -0.19 -0.83 -0.47
Smo437596 (PACid_15419150)
0.09 -0.01 -0.05 0.19 0.31 0.24 0.52 0.35 0.37 0.3 0.18 0.08 -0.98 -0.83 -0.51 -0.58 0.52 -0.16 -0.08 -5.28 -1.52 -2.83 -0.11 -0.15 -2.32 0.05 0.91 1.1 0.41 0.52 -0.03 -0.13
Smo437676 (PACid_15419827)
-0.49 -0.19 -0.08 0.17 0.3 0.19 0.69 0.79 0.77 0.76 0.67 0.37 -2.3 -1.88 -2.49 -1.61 0.37 -0.8 -0.26 -4.01 -2.62 -4.95 -0.3 -0.85 -2.2 0.28 1.37 1.42 0.54 0.36 -0.2 -0.42
Smo440741 (PACid_15407131)
-0.15 -0.32 0.02 0.27 0.44 0.59 0.72 0.62 0.62 0.38 0.43 0.08 -2.05 -0.8 -1.26 -1.65 0.49 -0.04 -0.59 -2.44 -2.55 -2.83 -0.12 -0.24 -1.85 0.38 1.12 1.19 0.39 0.37 -0.35 -0.91
Smo441756 (PACid_15410246)
-0.76 -0.53 -0.52 0.02 0.16 0.32 0.46 0.59 0.43 0.26 -0.08 -0.25 -0.08 -0.68 0.87 0.05 -0.53 -0.81 0.41 -1.34 -1.0 -0.99 -0.16 0.12 0.4 0.61 0.61 0.7 -0.17 -0.08 -0.66 -0.79
Smo445481 (PACid_15419682)
-0.58 -0.3 -0.26 0.12 0.14 0.45 0.44 0.32 0.11 -0.13 -0.32 -0.47 -0.13 -0.1 0.26 0.04 -0.44 -0.58 -0.06 -1.76 -0.99 -2.56 0.39 0.55 -0.14 0.55 1.06 1.25 -0.28 -0.07 -0.8 -0.62
Smo63947 (PACid_15403463)
-0.71 -0.55 -0.37 0.1 0.35 0.29 0.54 0.3 0.3 0.2 -0.09 -0.28 -0.03 0.05 1.1 0.07 -0.18 -0.69 0.58 -0.69 -1.59 -2.57 0.13 0.33 0.34 0.1 0.37 0.15 0.06 0.09 -0.91 -1.03
Smo640 (PACid_15421435)
-0.7 -0.22 -0.57 0.02 0.36 0.25 0.08 0.38 0.44 0.15 0.2 -0.48 0.16 -0.82 1.37 0.24 -0.51 -0.4 0.57 -0.87 -6.12 -2.97 -0.09 0.14 -1.07 0.57 0.68 0.75 -0.34 0.11 -0.62 -0.32
Smo76220 (PACid_15414223)
-0.38 -0.25 -0.1 0.11 0.41 0.42 0.62 0.63 0.24 0.28 -0.03 -0.32 -0.05 -1.47 0.42 0.23 -0.07 -1.31 0.66 -3.8 - - 0.2 0.14 -3.03 0.85 0.87 0.94 0.15 0.06 -0.54 -0.23
Smo79915 (PACid_15405851)
0.2 0.2 0.26 0.55 0.44 0.71 0.65 0.71 0.48 0.46 0.06 0.2 -0.81 -0.6 0.39 -0.12 0.16 -1.04 0.04 -1.48 -2.45 -2.1 -0.33 -0.39 -1.63 -0.15 0.59 0.53 0.25 0.21 -0.83 -1.44
Smo80975 (PACid_15409267)
-0.29 0.36 0.06 0.09 0.18 0.97 0.88 0.7 0.23 0.08 -0.44 -0.58 -0.19 -1.61 0.39 -0.02 -0.06 -0.12 0.53 -0.77 - -2.37 -0.29 -0.23 -0.96 0.09 1.0 0.58 0.3 0.42 -1.78 -1.38
Smo84012 (PACid_15414036)
-0.02 0.12 -0.02 0.39 0.43 0.79 0.86 0.94 0.59 0.18 -0.15 -0.06 -0.57 -1.13 0.5 -0.11 -0.04 -1.08 0.35 - - -4.85 -0.13 -0.4 -2.55 0.24 0.83 1.11 0.13 0.29 -1.41 -1.14
Smo85220 (PACid_15418411)
-0.77 -0.33 -0.31 0.25 0.41 0.43 0.88 0.96 0.7 0.52 0.09 0.02 -1.03 -1.29 -0.5 -1.11 0.02 -0.56 -0.24 -3.83 -5.37 -3.04 -0.19 -0.34 -0.98 0.55 1.24 1.15 0.09 0.28 -0.32 -0.14
Smo86079 (PACid_15419919)
-0.3 -0.16 0.19 0.33 0.65 0.76 1.05 1.01 0.87 0.58 0.25 0.01 -0.76 -0.7 0.43 -0.74 -0.03 -0.47 -0.24 -5.81 -6.05 -7.97 -0.35 -0.32 -2.44 -0.31 0.68 0.79 0.22 0.24 -0.68 -1.25
Smo92998 (PACid_15422246)
-0.6 -0.47 -0.4 0.03 0.25 0.23 0.37 0.36 0.2 0.04 -0.06 -0.46 0.14 -0.25 0.94 0.12 -0.07 -0.19 0.43 -0.79 -1.62 -1.5 0.39 0.4 0.08 -0.04 -0.13 -0.3 -0.12 -0.01 -0.08 0.49
Smo93775 (PACid_15401324)
-0.96 -0.91 -0.15 -0.17 0.52 0.7 0.69 0.8 0.86 0.57 -0.23 -0.36 -0.31 -1.86 0.48 -0.31 -0.58 -0.85 0.27 - - -1.65 -0.08 -0.13 -5.16 1.3 1.12 1.28 -0.39 -0.4 -0.8 -0.44
Smo96340 (PACid_15406928)
-0.43 -0.27 0.2 0.06 0.82 0.35 0.49 0.27 -0.11 -0.16 -0.01 -0.52 0.09 -0.69 0.69 0.24 -0.11 -0.09 0.33 -3.48 -3.09 -0.65 0.31 0.46 -1.61 0.25 0.83 0.75 -0.19 0.05 -1.17 -0.58
Smo96496 (PACid_15407800)
-0.71 0.03 -0.06 0.31 0.56 0.39 0.62 0.66 0.3 0.02 -0.58 -0.83 -0.27 -0.66 0.73 -0.04 -0.11 -0.55 0.5 -6.56 -3.51 -3.11 0.03 0.14 -0.98 0.1 1.36 1.23 -0.06 0.18 -1.45 -1.42
Smo97243 (PACid_15409176)
0.21 0.28 0.35 0.44 0.54 0.47 0.33 0.35 0.24 0.16 -0.13 -0.03 -0.21 -0.36 0.53 0.21 -0.04 -0.78 0.59 -3.8 -2.25 -1.4 -0.14 -0.2 -1.29 -0.16 0.66 0.73 -0.1 0.03 -0.68 -0.84
Smo98426 (PACid_15413640)
-0.34 -0.03 0.03 0.17 0.57 0.34 0.31 0.53 0.32 0.33 0.25 -0.11 0.01 -1.4 0.65 0.46 -0.36 -1.26 0.79 -5.71 - -2.49 0.5 0.58 -2.51 0.63 0.65 0.34 -0.06 0.18 -0.9 -1.08
Smo98506 (PACid_15414388)
-0.16 -0.27 -0.28 -0.04 0.28 0.44 0.71 0.63 0.62 0.52 0.32 0.0 -0.03 -0.6 0.89 0.07 -0.52 -0.89 0.22 -0.37 -2.17 -2.23 -0.36 -0.16 -2.13 0.68 0.4 0.6 -0.17 0.01 -0.94 -0.82
Smo99934 (PACid_15420359)
-0.05 0.29 0.21 0.36 0.58 0.39 0.34 0.46 0.17 -0.29 -0.26 -0.48 -0.3 0.41 0.8 0.19 0.07 -1.54 0.46 -2.66 -1.69 -4.24 0.17 -0.21 -0.77 0.44 0.77 0.89 -0.11 -0.1 -1.13 -1.8

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.