Heatmap: Cluster_206 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo106449 (PACid_15417816)
0.37 0.28 0.34 0.24 0.08 0.23 0.43 0.17 0.19 0.36 0.68 0.77 0.64 -0.3 1.69 0.55 0.2 -0.29 -0.27 -10.62 -8.2 -8.51 -0.54 -0.01 -7.55 -1.05 -1.92 -1.09 0.42 0.55 -0.88 -0.99
Smo10944 (PACid_15403373)
1.65 1.08 0.48 0.27 -0.02 0.13 0.43 0.34 0.42 0.62 0.83 1.16 -0.83 -1.02 1.03 -0.91 0.41 -0.4 -1.24 -3.79 -5.09 -2.02 -1.41 -2.19 -3.28 -1.46 -0.74 -0.65 0.42 0.5 -0.83 -1.16
Smo115488 (PACid_15422066)
1.27 0.66 0.39 0.25 0.29 0.17 0.23 0.22 0.49 0.61 0.6 0.6 -0.97 -1.46 -0.77 -0.39 0.05 -0.16 0.2 -1.74 -3.25 -3.14 0.15 0.34 -3.91 -0.48 -0.3 -0.15 0.26 0.39 -0.31 -0.25
Smo120972 (PACid_15418579)
0.32 0.17 0.26 0.54 0.64 0.28 0.66 0.65 0.71 0.63 0.61 0.45 -0.11 0.58 0.46 0.41 -0.71 -1.55 -0.04 -7.13 -0.57 -5.77 -0.15 -0.26 -2.34 -0.4 -0.44 -0.36 0.02 -0.26 -0.81 -0.73
Smo124989 (PACid_15407872)
0.17 0.52 0.01 0.65 0.75 0.64 0.28 0.31 0.74 0.86 0.68 0.49 -0.7 0.79 1.58 0.43 -2.57 -2.06 -1.04 -1.28 -3.33 -0.82 -2.89 -1.31 0.6 0.03 -0.53 -0.3 -2.17 -0.99 -2.34 -0.96
Smo146738 (PACid_15404136)
0.74 0.4 0.58 0.51 0.86 0.61 0.43 0.61 0.94 0.98 1.13 0.63 -2.02 -2.96 1.02 -1.32 -0.3 -1.04 -1.17 -1.95 -5.49 -7.0 0.33 -0.75 -5.65 -0.1 -0.84 -0.46 -0.44 -0.38 -0.19 -0.12
Smo149244 (PACid_15409215)
1.11 1.03 0.76 0.39 0.1 -0.07 -0.05 0.01 0.22 0.28 0.49 0.65 -0.21 -0.41 -0.8 -0.23 -0.22 -0.09 0.36 -5.36 -0.03 -4.05 -0.93 -0.87 -1.02 0.16 0.06 0.14 -0.1 -0.17 -0.32 -0.28
Smo168175 (PACid_15419982)
1.43 0.72 0.57 0.36 0.32 0.45 0.38 0.14 0.6 0.58 0.77 0.91 -0.42 0.04 0.19 -0.04 -0.35 -0.12 -0.34 -4.24 -3.26 -2.52 -0.28 -0.03 -6.27 -1.54 -1.5 -1.17 -0.01 0.26 -0.45 -0.55
Smo173388 (PACid_15414217)
0.33 0.34 0.22 0.35 0.34 0.28 0.26 0.18 0.52 0.46 0.4 0.45 -0.25 0.61 0.49 -0.33 0.01 -0.13 -0.19 -1.3 -0.87 -1.77 -0.11 -0.11 -0.61 -0.46 -0.41 -0.32 -0.17 -0.09 -0.39 -0.45
Smo20797 (PACid_15409245)
1.86 1.4 0.44 0.13 0.69 0.81 0.63 0.35 0.34 0.55 0.79 1.29 -3.13 -0.91 -1.29 -2.09 -1.32 -1.45 -2.54 - - - -1.74 -2.24 -1.71 -0.68 1.42 0.72 -0.76 -1.27 -0.25 -1.5
Smo21497 (PACid_15409874)
0.1 0.56 0.68 0.63 0.69 0.68 0.4 -0.05 0.15 0.09 0.12 -0.01 -0.49 0.02 1.11 -0.16 0.38 -0.27 -0.82 -3.28 -2.94 -2.25 0.01 0.02 -2.32 -0.89 0.37 0.81 -0.24 -0.1 -1.02 -0.83
Smo22039 (PACid_15409592)
0.59 0.9 1.06 0.93 0.48 0.39 0.63 0.4 0.52 0.66 0.53 0.59 -0.55 0.12 -0.07 -0.21 -0.32 -0.52 -0.98 - - - -0.06 -0.19 - -0.77 -1.24 -1.08 0.02 0.11 0.2 -0.1
Smo228338 (PACid_15406856)
0.82 0.45 0.19 0.09 0.02 0.21 0.17 0.04 0.24 0.37 0.55 0.6 -0.02 0.64 1.1 0.09 -0.43 0.33 0.01 -1.28 -1.14 -1.39 -0.34 -0.31 -0.93 -1.15 -1.53 -1.47 -0.03 0.19 -0.62 -0.28
Smo232921 (PACid_15423350)
0.54 0.44 0.38 0.37 0.17 0.48 0.54 0.16 0.29 0.5 0.76 1.03 0.4 -0.51 1.43 0.23 0.05 -0.19 -0.53 -2.7 -1.22 -2.27 -0.83 -0.16 -1.33 -1.52 -2.36 -1.66 0.14 0.22 -1.18 -1.24
Smo233622 (PACid_15401734)
1.05 0.5 0.56 0.34 0.32 0.3 0.77 0.13 0.42 0.53 0.52 0.41 -0.75 0.49 0.71 -0.55 0.62 0.09 -0.66 -3.67 -6.39 -6.11 -0.82 -0.69 -4.04 -0.84 -0.75 -0.47 0.02 0.27 0.14 -0.25
Smo234346 (PACid_15402388)
1.08 0.7 0.49 0.49 0.36 0.45 0.27 0.15 0.42 0.59 0.49 0.56 -0.55 -0.52 -0.09 -0.33 -0.16 -0.46 0.38 -3.81 -2.85 -3.3 -0.04 -0.0 -3.46 -0.68 -0.31 -0.03 0.01 0.13 -0.03 -0.19
Smo267823 (PACid_15414336)
0.41 0.82 0.93 0.75 0.51 0.39 0.59 0.42 0.3 0.4 0.58 0.64 -0.95 -0.27 -0.82 -0.8 -0.02 -0.35 -0.77 -3.78 -2.05 -4.42 -0.43 -0.43 -1.56 -0.42 0.29 0.14 -0.48 -0.75 0.42 0.48
Smo28213 (PACid_15406257)
2.68 2.39 2.32 0.8 -1.17 -4.85 -1.29 -0.83 0.01 1.35 1.93 2.14 - -8.35 - - -5.59 -4.07 - - - - - -7.41 -5.73 -2.13 -4.49 - -7.32 -6.17 -7.29 -
Smo31903 (PACid_15420666)
1.16 0.57 0.2 0.02 -0.05 -0.1 0.06 0.33 0.59 0.78 0.9 1.04 -1.43 -0.55 -0.01 -0.71 -0.31 -0.54 -0.14 -0.88 -1.03 -1.7 0.07 0.22 -2.87 -0.46 -0.84 -0.68 0.28 0.31 -0.36 -0.2
Smo402905 (PACid_15407949)
0.88 0.69 0.56 0.43 0.42 0.4 0.4 0.47 0.53 0.57 0.52 0.64 -0.43 -0.06 0.54 -0.51 -0.36 -2.47 -0.2 -1.66 -1.72 -2.88 -0.54 -0.61 -0.23 -0.27 -0.43 -0.36 -0.21 -0.07 -0.37 -0.21
Smo403736 (PACid_15409529)
0.26 0.68 0.64 0.67 0.55 0.13 0.28 0.26 0.26 0.1 0.58 0.17 0.38 0.53 0.98 0.68 -0.46 -0.22 -0.2 -1.6 -1.12 -2.41 -0.32 -0.22 -1.62 -0.28 -1.22 -1.02 -0.72 -0.71 -0.59 -0.3
Smo403954 (PACid_15411178)
0.7 0.73 0.84 0.88 0.73 0.72 0.65 0.01 0.3 0.52 0.67 0.64 -1.87 -0.88 0.81 -0.72 -0.33 -0.46 -0.59 -4.44 -3.62 -1.79 -0.09 -0.14 -5.29 -0.36 -0.86 -0.44 -0.1 0.54 -0.42 -0.85
Smo404824 (PACid_15413266)
0.55 0.64 0.86 0.72 0.6 0.73 0.59 0.67 0.56 0.6 0.43 0.32 -0.56 -0.01 -2.64 0.32 0.1 0.2 -0.69 - -4.01 - -0.51 -0.91 -3.73 -0.48 -0.51 -0.5 0.3 0.31 -0.05 -0.32
Smo406755 (PACid_15418374)
1.18 1.18 0.75 0.34 0.03 -0.1 0.61 -0.1 0.13 0.33 0.54 0.89 -0.9 0.47 -0.25 -0.47 -0.36 0.11 -0.01 -4.24 -3.27 -4.64 -0.57 -0.54 -1.56 -0.57 -0.21 0.07 0.24 0.23 -0.35 -1.09
Smo407278 (PACid_15417511)
0.89 0.35 0.21 0.22 0.39 0.29 0.14 0.4 0.52 0.54 0.57 0.73 -0.88 -0.39 0.63 -0.62 -0.62 -0.59 -0.62 -1.31 -1.44 -1.34 -0.31 -0.1 -1.42 0.03 0.22 0.42 -0.41 -0.27 -0.26 -0.15
Smo409852 (PACid_15405504)
0.87 1.89 1.65 1.34 0.68 0.99 0.44 0.32 0.19 1.01 0.82 1.0 0.52 0.1 0.9 0.54 -3.08 - - - - - -5.35 -3.86 -1.35 -2.24 -0.27 -3.73 -5.33 -3.64 -5.28 -4.76
Smo411688 (PACid_15410284)
0.78 1.25 0.8 0.86 0.56 0.54 0.27 -0.09 0.52 0.24 0.6 0.66 0.25 0.72 1.42 0.16 -0.35 -0.11 -2.97 -6.41 -25.59 -6.17 0.3 0.14 -3.74 -1.77 -1.09 -0.73 -1.52 -1.35 -1.97 -1.8
Smo413735 (PACid_15416722)
0.51 0.9 0.67 0.53 0.59 0.44 0.28 -0.01 0.37 0.11 0.4 0.14 -0.73 0.62 1.36 0.3 0.15 -0.72 -1.09 -3.07 -1.96 -7.8 -0.1 -0.52 -2.79 0.05 -0.36 0.2 -0.26 0.05 -1.45 -1.54
Smo418320 (PACid_15405876)
2.38 1.75 0.98 0.67 0.91 0.36 0.21 0.68 0.57 0.95 1.36 1.83 -2.63 -0.28 -0.29 -2.6 -3.05 -5.2 -2.1 -5.67 - - -2.8 -5.05 -4.01 -0.83 -1.03 -1.04 -4.89 -4.23 -3.2 -3.78
Smo418337 (PACid_15405917)
1.63 1.35 1.15 0.62 0.35 0.07 0.22 0.26 0.3 1.0 0.96 1.18 -0.85 0.2 0.51 -1.01 -1.86 -4.59 -1.52 -1.98 -0.88 -2.64 -1.66 -1.95 -0.63 -0.01 -0.17 -0.58 -2.68 -2.67 -1.03 -0.7
Smo419371 (PACid_15408928)
1.58 1.1 0.39 0.19 -0.08 -0.25 -0.32 -0.06 0.07 0.37 0.51 0.83 -2.01 -1.77 -2.78 -0.98 0.12 -0.14 0.46 -0.17 -3.36 -5.14 -0.26 -0.82 -1.97 0.38 0.12 0.16 0.28 0.52 0.2 -0.31
Smo422043 (PACid_15415723)
0.91 1.25 0.88 0.95 0.71 0.39 0.01 0.14 0.34 0.49 0.34 0.63 1.09 1.11 1.12 0.91 -1.62 -1.37 -1.57 -2.23 -1.77 -3.51 -1.71 -1.59 -2.04 -0.45 -1.3 -1.03 -2.27 -1.92 -2.17 -1.94
Smo422260 (PACid_15417243)
1.14 0.68 0.66 0.56 0.55 0.28 0.39 0.24 0.58 0.53 0.74 0.72 -0.84 0.35 -0.26 -0.79 -0.31 -1.41 -0.03 - -6.42 -9.48 -0.61 -0.84 -4.09 -0.25 -0.08 0.01 -0.49 -0.24 0.53 0.28
Smo431230 (PACid_15421339)
0.52 1.16 0.72 0.56 0.55 0.62 0.56 0.75 0.45 0.32 0.83 0.46 -0.53 1.61 1.03 -0.37 -1.86 -2.73 -1.45 - - - -1.46 -0.93 -2.39 0.4 0.45 0.42 -2.04 -1.99 -2.65 -2.47
Smo437285 (PACid_15416791)
1.04 0.87 0.8 0.53 0.42 0.34 0.43 0.12 0.45 0.64 0.81 0.73 -0.83 0.42 0.81 -0.22 0.01 0.01 -0.44 -3.58 -3.62 -4.32 -0.3 -0.5 -4.36 -0.82 -1.32 -1.42 -0.28 -0.14 -0.38 -0.58
Smo438355 (PACid_15420420)
0.75 0.54 0.03 -0.09 -0.14 -0.43 -0.4 -0.25 0.29 0.47 0.61 0.92 0.16 -0.66 1.4 0.11 -0.59 -0.8 -0.26 -1.9 -0.52 -3.05 -0.41 0.34 0.16 -0.16 -0.99 -0.93 0.05 0.32 -0.21 -0.37
Smo438544 (PACid_15421813)
1.34 0.43 0.31 0.1 0.16 0.05 0.01 0.08 0.17 0.38 0.46 0.65 -0.04 -0.27 -0.66 0.27 -0.26 -0.35 0.68 -10.41 -6.13 -8.01 -0.32 -0.25 -5.84 0.77 -0.18 0.11 0.18 0.31 -0.31 -0.27
Smo439353 (PACid_15423234)
1.43 0.97 0.61 0.51 0.4 0.36 0.17 -0.03 0.36 0.6 0.46 0.74 -0.19 -0.12 -0.76 -0.22 -0.35 -0.74 -0.26 -3.57 -4.79 -2.68 -0.57 -0.63 -2.53 -0.56 0.26 0.24 -0.16 -0.08 -0.14 -0.29
Smo444748 (PACid_15418991)
0.73 0.43 0.28 0.26 0.25 0.22 0.06 0.1 0.26 0.47 0.43 0.5 0.31 0.17 0.06 0.41 -0.25 -0.05 0.25 -1.76 -1.88 -0.68 -0.32 -0.17 -2.57 -0.6 -1.17 -0.91 0.21 0.37 -0.08 -0.02
Smo446268 (PACid_15420965)
0.54 0.8 0.95 1.02 0.92 0.48 0.64 0.78 0.7 0.62 0.58 0.31 -0.64 0.37 -1.74 -0.78 -0.95 -0.75 -1.78 -7.11 -2.93 - -0.18 -0.1 -1.26 -1.58 -0.14 -0.57 -0.39 -0.3 -0.09 0.45
Smo447922 (PACid_15406806)
0.4 0.55 0.54 0.58 0.38 0.45 0.44 0.67 0.55 0.66 0.46 0.47 0.14 0.28 0.8 0.18 -0.27 -0.88 0.24 -6.48 -5.24 - -0.31 -0.17 -2.3 -0.5 -0.61 -0.61 -0.29 -0.1 -0.51 -0.56
Smo448335 (PACid_15405171)
0.62 0.62 0.58 0.46 0.22 0.23 0.45 0.44 0.5 0.62 0.66 0.52 -0.38 0.25 0.54 -0.29 -0.46 -1.23 -1.7 -2.57 -2.37 -1.82 -0.87 -1.16 -0.49 -0.67 -0.05 0.06 -0.46 -0.35 0.71 0.27
Smo79938 (PACid_15405909)
0.63 0.61 0.53 0.4 0.72 0.47 0.31 0.26 0.4 0.35 0.35 0.32 -0.22 0.09 0.67 0.04 -0.14 -0.04 0.2 -2.74 -2.04 -1.14 -0.3 -0.49 -3.58 -0.72 -0.25 -0.19 -0.25 -0.24 -0.52 -0.23
Smo90221 (PACid_15411054)
0.35 0.39 0.53 0.31 0.48 0.35 0.41 0.14 0.36 0.65 0.79 0.36 -0.32 -0.19 0.31 -0.39 0.07 -0.21 -0.31 -1.16 -3.36 -1.01 -0.06 0.0 -2.53 -0.27 -0.51 -0.05 -0.13 0.16 -0.35 -0.21
Smo90314 (PACid_15411772)
0.33 0.38 0.43 0.44 0.39 0.26 0.67 -0.04 -0.01 0.0 -0.19 -0.09 0.3 0.94 0.78 0.09 -0.47 -0.24 0.1 -1.58 -0.67 -3.09 -0.57 -0.43 0.37 -0.28 -0.01 0.03 -0.71 -0.59 -0.49 -0.57
Smo92823 (PACid_15421309)
0.41 0.62 0.23 0.13 0.39 0.26 0.21 0.14 0.48 0.27 0.41 0.31 0.66 0.6 1.16 0.48 -0.57 -1.66 -0.4 -1.82 -0.23 -3.86 -0.68 -0.44 0.55 -0.04 -0.51 -0.31 -0.73 -0.64 -1.5 -1.57
Smo93784 (PACid_15401357)
0.89 0.64 0.58 0.3 0.49 0.45 0.22 0.01 0.1 0.22 0.61 0.29 -0.14 0.28 0.71 0.61 -0.09 -0.0 0.04 -6.14 -4.1 -2.88 -0.36 -0.38 -4.96 -0.05 -0.05 -0.09 -0.03 -0.04 -0.91 -0.91
Smo96572 (PACid_15408555)
0.75 0.83 0.96 0.66 0.56 0.6 0.51 0.46 0.69 0.85 0.82 0.75 -1.06 -1.9 1.05 -0.18 -1.7 -1.73 -2.21 -3.95 -1.43 - -0.83 -0.75 -5.68 1.07 0.52 0.57 -1.53 -1.24 -1.97 -2.37

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.