Heatmap: Cluster_141 (HCCA cluster)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo101169 (PACid_15423186)
-1.39 -2.32 -3.17 -2.93 -2.17 -2.05 -1.0 -1.2 -1.06 -0.78 -0.9 -1.0 -1.47 -0.67 -1.07 -0.43 0.79 1.34 0.22 -1.3 0.99 -0.6 0.01 0.37 0.1 -1.84 -0.4 -0.55 1.46 1.56 1.98 1.17
Smo111918 (PACid_15414253)
- - - - - - -2.49 - - - -2.23 - -0.41 - - -0.95 0.6 2.18 0.89 - - - 0.82 0.17 0.51 -0.3 0.69 -0.07 1.71 1.61 2.09 2.05
Smo112333 (PACid_15412583)
-3.31 -3.85 -2.8 -5.29 - - - -2.57 -2.82 -3.24 -3.5 -2.4 0.8 -4.65 -4.61 0.46 0.72 2.05 0.91 -0.23 -0.15 -0.55 0.84 0.94 1.49 -2.21 -1.88 -3.02 1.04 1.19 1.78 1.46
Smo112561 (PACid_15414231)
- - - - - - - - - - - - 1.27 - - 0.62 1.13 1.99 1.38 - - - 1.18 1.37 - - - - 1.41 1.67 2.16 2.03
Smo16279 (PACid_15415762)
- - - - - -1.32 - 0.23 0.64 - 1.88 - -2.54 - -2.31 - 0.49 - -1.05 - - - -1.57 -1.66 - 0.5 - - 2.97 1.92 2.08 2.33
Smo17644 (PACid_15421501)
-2.64 - -3.16 -1.61 - - -1.06 0.31 -1.07 -1.36 -1.57 -2.84 -0.55 - -3.18 -1.15 0.94 2.2 0.85 - - - 1.13 0.81 - -1.98 -2.27 -0.28 1.79 1.86 1.65 1.72
Smo19280 (PACid_15402171)
- - - - - - - - - - - - - - - -0.51 -0.49 2.04 1.34 - - - 1.7 1.59 - - - - 2.87 1.79 1.83 1.75
Smo19630 (PACid_15405033)
- - - - - - - - - - - - 0.13 - - 0.95 1.4 0.76 1.08 - -1.17 - 1.53 2.31 - - - - 1.95 1.93 1.91 1.49
Smo19741 (PACid_15405850)
- - - - - - - - - - - - 0.26 - - 2.17 0.27 1.12 1.2 - - - -0.85 1.19 - - - 3.09 0.94 2.3 0.31 0.26
Smo231064 (PACid_15413843)
0.15 -0.93 0.24 -0.05 -0.19 0.05 0.61 0.23 0.95 0.69 0.78 0.66 -4.91 -1.95 -1.82 -2.7 -0.54 -2.82 -0.25 -2.72 -1.79 - 0.58 -0.47 0.67 -0.5 -0.49 -0.54 1.67 1.68 -0.1 -0.59
Smo268490 (PACid_15414366)
-0.47 -0.65 -0.46 -0.7 -1.29 -0.52 0.4 0.05 0.63 1.02 0.71 0.2 -2.67 -1.47 -0.35 -1.77 -0.39 -0.39 -0.01 - 0.14 -1.29 0.41 -0.33 -0.4 -0.31 -0.23 -0.06 1.73 1.74 0.01 -0.54
Smo27771 (PACid_15407217)
-1.83 -0.48 - - - - -0.44 - - - - -0.41 -2.12 - - 0.01 0.23 2.08 1.42 - - - 0.91 0.09 - - 1.08 - 2.73 2.21 0.81 1.1
Smo28561 (PACid_15408651)
-0.61 -0.87 -1.38 -1.0 -1.36 -1.3 -1.44 -0.88 -0.9 -0.4 -0.8 -0.44 0.58 -0.94 -2.05 0.69 0.95 1.22 0.83 - -0.56 -6.46 0.98 0.93 -1.15 -0.31 -1.71 -1.39 1.62 1.33 0.92 0.78
Smo28598 (PACid_15408730)
-1.65 -2.88 -0.85 -1.81 -0.76 -2.41 -1.56 -1.82 -1.35 -0.65 -1.11 -1.64 -0.9 -2.75 -2.35 -0.24 1.25 1.98 0.86 - - - 1.61 1.28 - -3.11 -1.58 -2.68 1.74 1.61 1.48 1.26
Smo28626 (PACid_15409384)
-1.71 -1.11 -1.38 -1.52 -1.73 -1.16 -2.07 -2.25 -2.19 -2.33 -1.44 -2.26 -0.69 -1.5 -2.38 0.43 1.43 1.99 0.46 - - - 1.67 1.02 - -2.7 -2.78 -2.3 1.4 1.19 2.14 1.43
Smo29162 (PACid_15408509)
-0.17 -1.34 -0.97 -0.06 -0.84 -0.95 -1.23 -0.47 0.11 -0.2 -0.21 -0.24 -3.18 - - -2.18 1.0 1.3 1.13 - - 0.12 -0.45 -1.19 - 0.34 -0.29 -0.36 1.78 1.54 1.09 1.47
Smo29495 (PACid_15410999)
- - - - - - - - - - - - 0.18 - - 1.22 1.75 1.61 1.52 - - -4.89 1.88 1.69 - - - - 1.91 1.73 1.53 1.25
Smo29617 (PACid_15412310)
- - - - - - - - - - - - -0.3 - - 0.37 0.7 1.3 0.62 - - - 0.56 -0.02 - - - - 2.96 2.84 1.51 2.02
Smo29653 (PACid_15412400)
-0.14 -1.33 -0.98 -0.06 -1.11 -1.65 -1.06 -0.81 0.36 -0.21 -0.68 0.38 -0.75 -3.69 - -1.09 0.92 0.26 0.98 - -0.17 -2.92 0.61 1.14 0.72 -1.1 -2.25 - 1.54 1.32 1.31 1.11
Smo39143 (PACid_15415765)
-0.63 -1.72 -1.22 -1.93 -3.01 -3.32 -2.08 -2.17 -1.97 -1.17 -1.21 -0.39 -1.88 -2.42 -2.87 0.42 0.26 0.6 0.84 -4.85 -4.01 - -0.54 -0.58 -1.04 1.34 -0.17 0.45 2.27 1.97 1.81 1.26
Smo39814 (PACid_15420959)
- - - - - - - - - - - - 0.23 - - 0.97 1.28 2.01 1.17 - -1.35 -2.13 1.43 1.56 - - - - 1.89 1.9 1.73 1.66
Smo402605 (PACid_15405716)
-4.74 -3.91 - - - -2.69 -1.2 -3.11 -4.85 -4.43 -5.06 -4.88 -0.55 -0.98 -2.32 -0.9 1.26 -0.97 1.21 -2.79 0.24 -0.47 0.85 0.47 -0.81 0.46 -0.06 0.61 1.78 1.87 2.1 1.51
Smo402709 (PACid_15406486)
-2.14 - -3.78 -1.85 -0.39 -0.78 -0.71 -2.81 -0.01 -1.63 -3.57 -1.58 -2.21 -3.21 -0.69 -0.31 0.18 1.61 0.2 - -1.11 - -0.09 -0.18 - -1.34 1.12 1.15 1.16 1.56 2.07 2.03
Smo403616 (PACid_15408670)
- - - - -2.18 -3.17 -3.21 -2.92 -3.41 - - -3.19 0.03 -0.04 -1.28 0.58 1.36 0.29 1.29 -2.18 - - 1.06 1.2 - -1.95 1.13 0.75 1.88 1.5 1.35 1.73
Smo413772 (PACid_15416834)
-0.67 -2.45 -4.21 -2.45 -3.95 -1.81 -0.06 -0.58 0.08 -0.41 -2.32 -1.64 -1.22 -3.83 -0.92 -0.8 1.21 1.58 0.23 - -3.5 - 0.74 -0.01 - -0.8 0.92 1.49 1.35 1.48 1.8 0.77
Smo415394 (PACid_15419668)
0.37 0.03 -1.42 -0.33 -2.66 -1.09 -1.38 -0.6 0.1 -0.37 0.45 1.23 -0.06 -4.94 -4.42 0.04 0.85 -2.62 -0.04 - 0.3 - 0.58 0.35 0.02 -1.95 - -2.02 1.76 1.78 1.37 0.44
Smo419482 (PACid_15409743)
-1.41 -0.66 -0.73 -0.74 0.24 -0.05 0.36 0.88 0.73 -0.28 -0.24 -0.23 -3.77 -0.66 -0.9 -2.55 0.89 0.33 -0.49 -2.84 -1.81 - 0.87 0.36 0.31 0.05 -0.09 0.77 1.57 1.28 -0.83 -0.58
Smo423585 (PACid_15422437)
-2.55 -2.56 - - - - - - -0.42 - -2.27 -2.47 0.78 0.54 -1.35 0.43 1.42 0.19 -0.78 - - - -1.22 -2.43 0.71 -0.34 -0.87 0.96 2.41 2.11 1.95 1.14
Smo424029 (PACid_15421361)
-2.26 - - -2.82 - - - -1.03 -2.84 - - - -0.33 -1.35 0.2 -0.29 0.98 1.52 0.65 - - - 1.59 1.72 - -0.64 -0.34 0.47 1.64 1.86 1.52 1.45
Smo426866 (PACid_15411265)
-1.64 - -0.71 - - - - - - - -0.55 - - - - 1.41 0.67 1.08 0.66 - - - 0.72 1.98 - - - 3.03 0.56 2.27 1.24 -
Smo431549 (PACid_15401416)
-2.16 -0.13 -1.23 -0.08 0.02 0.49 -1.15 0.12 -0.15 0.2 -2.85 -0.29 0.75 -1.93 -3.34 1.14 0.53 0.58 0.75 - - - 0.46 1.4 -0.14 -0.96 0.04 1.19 0.03 0.61 0.8 -0.69
Smo445941 (PACid_15423297)
- -0.3 - - - - -1.23 -1.38 - -1.34 - -1.16 - -1.17 -0.21 1.02 0.54 -0.46 - - - - 0.96 -0.08 0.97 0.98 - 1.15 2.76 2.69 -0.13 -0.21
Smo447838 (PACid_15406091)
-0.16 -0.98 -0.18 0.27 -0.18 -0.21 0.21 0.03 0.47 0.52 0.86 -0.16 -1.83 -2.62 -7.13 -1.89 1.56 -13.53 0.55 -2.51 -0.65 -3.91 0.01 -0.85 -0.56 0.18 -0.62 -0.73 1.21 0.91 0.94 1.2
Smo49950 (PACid_15406701)
-4.8 - -5.64 -5.33 -3.63 -3.79 -4.45 -3.37 -4.66 -4.95 - -3.91 1.1 -2.17 -4.97 1.3 0.63 1.59 1.37 - - - 1.2 1.12 - - - - 2.12 2.46 1.61 1.09
Smo58719 (PACid_15409397)
-0.38 -0.55 -0.36 -0.15 -0.03 -0.08 -0.04 -0.08 -0.23 -0.19 -0.44 -0.32 -0.46 -0.52 -1.83 0.03 0.28 0.56 0.4 -0.21 -0.28 -1.55 0.06 -0.15 -0.04 0.18 0.1 -0.04 0.63 0.64 0.8 1.05
Smo59591 (PACid_15411023)
-0.06 -0.55 -0.56 -0.57 -0.46 -0.27 -0.35 -0.54 -0.71 -1.03 -0.84 -1.21 -1.05 -1.31 -4.3 -0.57 0.51 1.43 0.4 -9.7 -0.85 -6.75 1.13 0.83 -1.71 -1.47 0.45 0.43 0.35 0.38 1.74 1.59
Smo71846 (PACid_15404058)
-2.02 -1.71 -1.33 -0.76 -2.19 -0.4 -1.07 -0.52 0.08 0.21 -1.3 -0.21 -3.74 - - -3.14 0.49 1.79 1.0 - - - 0.72 -0.09 0.52 0.94 -0.06 0.41 1.44 1.48 1.27 0.69
Smo72132 (PACid_15401656)
-0.85 -2.59 -1.03 -2.28 -1.36 -0.08 -1.41 -0.78 0.21 -1.02 -1.34 -1.68 -0.53 -2.04 0.24 0.22 0.84 0.46 0.75 - - - 0.84 0.53 -2.66 -0.28 0.57 0.37 1.4 1.54 1.44 1.35
Smo7233 (PACid_15422916)
- - - - - - - - - - - - 0.52 - - 1.52 0.76 0.87 1.47 - - - 0.91 0.61 - - - - 3.0 2.28 1.65 0.99
Smo73157 (PACid_15404553)
- - - - - - - - - - - - 0.66 - - 1.14 0.56 1.65 1.91 - 0.03 1.39 0.6 0.49 -2.57 - - - 1.84 2.15 1.26 1.44
Smo73189 (PACid_15404634)
-1.83 -1.14 -1.31 -0.42 -1.18 -0.85 -0.65 -1.45 -0.83 -0.2 -0.53 -0.85 0.12 -1.03 -0.59 0.58 0.83 0.86 0.99 - -3.85 - 1.26 0.75 -3.7 -2.36 -2.92 -2.37 1.63 1.56 1.58 1.22
Smo78481 (PACid_15421531)
-4.44 -5.73 - -7.03 -6.83 - -5.08 -2.06 -2.48 -1.2 -1.96 -2.49 0.13 -1.01 -1.74 -0.79 -3.26 -1.1 -0.72 - - - -1.31 -2.36 - -1.46 -3.58 -4.29 3.13 2.82 2.19 2.45
Smo85261 (PACid_15418492)
-1.07 -0.7 -0.61 -0.5 -0.6 -0.75 -0.38 -0.11 -0.68 -0.9 -0.81 -0.37 -0.09 -0.47 -0.28 0.05 0.55 1.43 0.48 -0.33 -1.45 -3.79 0.43 0.39 0.49 -2.09 -0.43 -0.98 0.88 0.69 1.25 1.27
Smo8657 (PACid_15406711)
-0.29 -0.99 -1.14 -0.77 -0.07 -0.59 -1.41 0.07 -0.02 -0.4 -0.56 -0.37 1.29 -0.88 -2.63 1.09 0.05 0.1 0.64 -2.8 -1.84 1.11 0.57 0.53 -1.15 -0.52 -2.46 -2.51 0.94 0.97 0.85 0.81
Smo89924 (PACid_15413201)
- - - - - - - - - - - - -0.5 - - 0.32 1.22 0.97 1.29 - - - 2.17 2.42 - - - - 2.11 1.95 1.51 1.28
Smo99234 (PACid_15415049)
-2.55 -4.49 -2.96 -3.12 -5.85 -3.84 -2.07 -2.78 -4.29 -2.54 -2.46 -3.73 -0.69 -4.3 -4.74 0.12 1.57 0.87 0.93 - - - 2.21 2.25 -2.84 -2.87 -4.68 - 1.48 1.38 1.99 1.6
Smo99676 (PACid_15418152)
-0.61 -0.86 -0.85 -0.93 -1.33 -1.16 -0.96 -0.8 -0.49 -0.24 -0.38 -0.26 0.09 -0.36 0.09 0.0 0.34 0.86 0.42 -1.3 0.83 0.31 -0.22 -0.2 -0.16 -0.86 -1.23 -1.39 0.89 1.05 1.3 1.33

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.