Heatmap: Cluster_123 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo112442 (PACid_15413398)
- - - - - - - - - - - - - - - - - - 2.64 - - - - - 4.5 - - - - 1.66 - -
Smo119889 (PACid_15414731)
- - - - - - - - - - - - - - - - - - 1.57 - - - - - 4.68 - - - 1.74 - - -
Smo124489 (PACid_15404051)
- - - - - - - - - - - - - - - 0.61 - - -0.01 - - - - -0.08 4.42 2.61 - - - 0.09 - -
Smo147479 (PACid_15404862)
-2.3 0.21 - - -1.93 - -2.83 -0.91 - -3.4 - -5.83 -3.76 -2.87 - - -5.37 2.55 3.33 - - - -5.35 -5.42 3.65 -0.35 - - - -3.56 - -5.66
Smo18213 (PACid_15421305)
- - - - - - - - - - - - 3.24 - - - - - -0.29 - - - - - 4.38 - - - -0.11 - - -
Smo232270 (PACid_15418239)
-2.9 - - - - -4.37 -3.29 -4.25 -2.46 -3.22 -5.15 -2.83 - - - -3.77 -2.93 -1.59 1.93 -3.39 - - -0.64 1.16 4.28 -1.16 - -9.39 0.84 0.53 -1.4 -1.16
Smo26771 (PACid_15404288)
- 2.51 - 1.57 - - - - - - - - - - - - - - - - -16.75 - - - 4.25 - - - - 2.12 - -
Smo402641 (PACid_15405808)
- - - - 1.84 - - - - - - - - - 1.07 - 0.65 - 0.65 - - - - 0.7 3.61 - - - 1.67 0.69 - 2.2
Smo403171 (PACid_15404932)
-1.15 - - - -0.2 - -1.82 -2.08 -2.02 - - -1.9 - -1.77 - 0.0 0.56 -1.36 1.2 - - - 1.25 1.78 3.62 - -0.26 - 0.79 1.41 - -0.25
Smo403260 (PACid_15405714)
-0.44 - 0.23 - - - - - 2.72 - 1.33 -2.6 - - - - - - - - - - 0.77 0.03 4.18 - - - - - - -
Smo404583 (PACid_15411126)
-1.03 -0.41 - -18.83 - -7.13 - 0.31 - - - -23.0 2.06 -13.47 -2.0 - - - - - - -0.45 - - 4.51 0.66 - - - - - -
Smo406108 (PACid_15413722)
- - - - - - - - - - - - - - - - -0.41 - 1.59 - - - 0.64 -0.37 4.65 - - - - - - -0.43
Smo406688 (PACid_15417682)
- - - - - - - - - - - - 0.31 - - 0.5 1.26 - 1.77 - - - 1.34 1.12 4.14 - - - - 0.22 - -
Smo407210 (PACid_15417355)
0.22 - - - - 0.07 - - - - - - - - 1.05 0.55 - 0.14 0.24 - - - - - 4.58 - - - - - - -
Smo407647 (PACid_15420519)
- -0.77 2.02 1.67 - - - 0.88 - - 0.27 - - 1.0 - - - 1.39 - - - - - 0.4 3.37 - - - - 0.49 1.8 -
Smo407992 (PACid_15422799)
- - - 2.21 - - - - - - - - - - - - - - - - - - - - 4.77 - - - - - - -
Smo410351 (PACid_15404842)
- - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - -
Smo410924 (PACid_15409455)
- - - - - - - - - - - - - - 0.67 - - 2.76 2.44 - - - - - 4.19 - - - - - - -
Smo411340 (PACid_15407738)
0.3 2.06 - -1.21 - - -0.84 -1.1 - 0.3 - -0.92 1.47 - - 2.14 - - - - 1.6 - 0.46 0.93 3.12 - - - - - -0.71 -0.76
Smo414779 (PACid_15419760)
- - - - - - - - - - - - - - - - - - 2.17 - - - - - 4.78 - - - - - - -
Smo416776 (PACid_15403178)
-1.56 - - - - - - - - - - - -0.24 - -1.12 -0.25 - - 1.59 - - - - - 4.59 0.69 - - - -0.39 - -
Smo417334 (PACid_15402956)
-2.13 - - - - - -1.34 -1.6 -1.28 - -0.49 -1.32 - 0.3 -1.19 - -0.03 1.58 2.94 - - - -0.1 -1.06 2.75 - - 2.04 0.78 0.85 -1.19 -
Smo417923 (PACid_15407483)
-0.69 - - - - - - 0.05 - - - - - - - - - - - - - - 1.53 0.44 4.27 - 2.77 - - - - -
Smo419235 (PACid_15408005)
- - - - - - - - - -3.11 -2.87 - -0.24 - -2.41 0.09 1.17 -1.03 2.15 -0.02 0.61 -1.15 0.48 0.13 3.49 -0.64 0.17 -0.47 -1.19 0.63 -0.14 -1.2
Smo419297 (PACid_15408172)
- - - - - - - - - - - - - - - 0.1 1.53 - - - - - - 0.88 4.03 2.63 1.87 - - - - -
Smo419406 (PACid_15409583)
-0.03 - - - - - - - - 0.11 - - - - 2.43 0.27 - - 0.11 - - - - - 3.92 1.11 - 2.33 - - - -
Smo419484 (PACid_15409749)
- - - - - - - - - - - - - - 2.66 - - - 2.14 - - - - - 4.13 1.89 - - - - - -
Smo420286 (PACid_15411488)
-0.03 -0.05 -0.46 0.01 -1.38 -0.42 -0.2 -0.58 -0.18 -0.64 -2.09 -0.2 0.07 0.2 -1.3 0.71 0.65 0.91 1.63 -4.66 -2.64 -2.6 0.57 0.84 1.8 -0.53 -1.28 -1.59 0.19 -0.07 -0.32 -0.34
Smo421425 (PACid_15415792)
- - - - - - - - - - - - - - - - - - 2.03 - - - - - 4.8 - - - - - - -
Smo424397 (PACid_15401574)
-0.96 - - - - 0.07 - - - - - 0.95 - - - - 0.06 0.76 3.06 - - - - 1.7 2.99 - - - 0.12 1.1 - 1.6
Smo424583 (PACid_15403023)
- - - 0.07 -1.04 - - - - -1.18 -0.6 - -0.83 0.76 1.51 -0.68 0.08 -0.22 1.82 - 1.74 - - - 2.88 1.29 0.55 1.35 - -0.95 -0.99 -
Smo424711 (PACid_15404371)
- - - - - - - - - - - - - - - - - 2.39 - - - - - - 4.57 - - - - - - 1.63
Smo425461 (PACid_15405154)
- - - - - - - 0.24 - - - 0.31 1.68 - -0.18 1.77 - - 2.54 - - - - - 3.35 - 1.75 - 0.42 - - 0.44
Smo427689 (PACid_15412676)
- -0.36 2.43 - - - - 1.29 - - 0.67 - - 1.41 - - - - - - - - - 0.8 3.78 - - - - 0.9 0.87 -
Smo428206 (PACid_15412352)
- - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - -
Smo428365 (PACid_15413293)
-27.33 - - - - - - - - - - - - - - - - - 1.75 - - - 2.18 0.88 4.48 - - - - - - -
Smo429929 (PACid_15420643)
-1.18 - - -0.03 - - - - - - - - - - - 0.46 1.3 2.1 2.62 - - - 0.44 0.23 3.16 - - - 0.22 0.32 0.29 0.24
Smo430535 (PACid_15420825)
- - - - - - 1.87 - - 1.7 - - - - -0.28 - 0.28 2.34 1.87 - - - - 1.33 3.23 - - - 0.26 - 0.32 -
Smo430703 (PACid_15422161)
- - - - - - - - - - - - - - - - - - - - - - - - 5.0 - - - - - - -
Smo431548 (PACid_15401415)
- - - - - - - - - - - - - - - 0.01 - 1.36 1.36 - - - - 0.98 4.11 - 2.33 - - - - 0.67
Smo431837 (PACid_15403635)
-0.89 - - - - - 2.3 - - - - - - - 0.14 - - - - 1.51 - - - - 4.01 2.37 - - - 0.35 - -
Smo431924 (PACid_15404348)
- - - - - - - - - - - - - 1.0 1.12 2.29 - - 0.97 - - - - - 3.93 - 2.53 - - - - -
Smo431931 (PACid_15404377)
-1.11 - - - - - - - - - - 0.17 - - - -0.38 0.94 0.83 0.31 - - - - 1.69 3.21 - 2.26 1.62 0.26 0.92 0.33 -
Smo432393 (PACid_15402888)
-1.1 - 0.5 - -16.39 - 0.81 - 0.73 - 0.94 - -15.24 0.74 - - - - 0.46 - - - 0.19 2.34 3.58 - - - - - - 1.83
Smo4954 (PACid_15419687)
-2.43 - - -0.62 - 1.97 0.53 - 0.5 -0.3 - -1.02 0.04 - - 0.39 -0.62 0.96 0.22 0.16 - - 0.3 -0.08 3.5 - - - -0.2 -0.26 -0.63 -
Smo5873 (PACid_15421783)
-1.74 - - -1.32 - 0.84 -0.91 - - - - - - - - - 1.4 0.55 1.05 - - - -1.0 -0.9 4.07 1.2 - - 0.04 0.68 - -
Smo66995 (PACid_15412495)
- - - - - - - - - - - - - - - - - 1.87 - - - - - - 4.63 - - - 1.84 - - -
Smo78040 (PACid_15418490)
0.61 - - - - - - - - - - - - - - - - - - - - - - - 4.93 - - - - - - -
Smo96440 (PACid_15407664)
- - - - - - - - - - 2.06 - - - - - - - - - - - - - 4.8 - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.