Heatmap: Cluster_129 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo110695 (PACid_15409117)
-1.88 -1.81 -0.62 -1.06 -0.86 -0.1 -0.93 -1.67 -1.84 -0.19 -1.89 -2.13 -2.26 -1.61 1.66 -1.14 -1.06 -0.7 3.87 2.15 - - -2.06 -3.79 - -3.68 -1.92 -2.56 -1.14 -1.55 -2.18 -2.26
Smo111449 (PACid_15410464)
-0.47 -0.98 -1.21 -0.7 -0.99 -0.42 -0.53 -0.22 -0.52 -0.08 -0.42 -0.22 -0.12 -0.28 -0.94 0.08 -1.45 -0.79 -0.01 2.48 0.98 2.0 -0.72 -0.47 -0.75 -0.87 -0.95 -1.81 -0.64 -0.63 0.16 0.22
Smo117066 (PACid_15402549)
-1.5 -1.91 -1.69 -1.78 -1.12 -0.76 -0.72 -0.71 -0.99 -0.71 -1.03 -1.52 -0.22 -1.18 -0.29 -0.47 -0.64 0.51 -0.81 2.82 0.72 2.17 -0.51 -0.31 -0.59 0.02 0.2 -0.53 -0.85 -0.92 -0.49 0.07
Smo122503 (PACid_15421121)
-0.65 -0.52 -0.46 -0.41 -0.46 -0.34 -0.35 -0.3 -0.16 -0.26 -0.21 -0.48 -0.0 -0.55 0.78 0.13 0.24 0.28 0.38 1.34 0.63 0.75 0.08 0.28 0.37 -0.22 -1.05 -0.71 0.0 0.06 -0.56 -0.77
Smo132836 (PACid_15408367)
-0.28 0.0 -0.17 -0.23 -0.28 -0.1 -0.36 -0.08 0.06 -0.31 -0.15 -0.18 -1.31 -1.06 -0.23 -0.85 -0.4 -0.58 -0.95 2.21 -0.51 2.15 -0.78 -0.87 -1.62 -0.22 -0.02 0.54 -0.9 -0.95 -0.4 -0.38
Smo134711 (PACid_15413527)
- - - - - - - - - - - - -2.81 - - -2.79 -4.37 - -4.29 4.11 1.36 3.2 -3.74 -5.44 1.12 - - - -3.58 -3.24 -4.18 -5.25
Smo141552 (PACid_15410496)
-5.77 -5.09 -6.97 -6.38 -3.18 -4.22 -3.35 -4.5 -6.5 -5.73 -5.86 -6.11 -7.18 -4.14 -9.26 -3.56 -6.05 -2.73 3.63 3.49 2.53 0.38 -8.72 -3.33 -5.75 -2.86 -2.79 -5.33 -4.56 -4.42 -4.64 -5.07
Smo164163 (PACid_15408179)
-4.07 -3.51 -4.34 -3.63 -2.67 -2.81 -2.22 -2.98 -2.91 -2.6 -3.37 -3.3 -2.89 -2.79 -0.0 -2.26 -2.66 -2.83 4.14 2.74 0.95 0.75 -5.67 -4.2 -3.8 -5.12 -3.42 -3.24 -3.94 -3.04 -3.51 -2.4
Smo16705 (PACid_15419361)
-1.08 -1.04 -1.6 -1.99 -1.73 -2.14 -2.17 -2.87 -2.63 -2.71 -1.71 -2.19 -1.91 -0.13 -0.04 -0.35 0.26 0.57 2.24 1.72 1.45 -1.73 0.11 0.25 -0.57 0.57 -0.91 -0.61 0.34 0.52 0.26 1.35
Smo168360 (PACid_15421372)
-0.42 0.45 -0.25 -0.34 -0.2 0.07 -0.09 -0.27 0.04 -0.19 -0.79 -0.72 -1.1 -0.2 1.17 -0.19 -0.66 -0.26 -0.1 1.88 0.69 1.01 -1.24 -0.95 -0.12 -0.32 0.48 -0.21 -0.76 -0.68 -0.75 -0.85
Smo236704 (PACid_15411296)
-1.19 -1.41 -1.05 -1.11 -0.41 -0.83 -0.56 -0.99 -0.35 -1.23 -0.98 -1.4 0.31 -0.76 2.13 0.73 -0.57 -1.05 0.15 2.89 -1.24 2.06 -1.15 -3.16 -2.54 -2.49 -2.74 -1.53 -1.07 -1.1 -0.65 -1.03
Smo27555 (PACid_15405704)
-0.64 -1.33 -1.65 -1.36 -0.81 -1.07 -1.73 -1.1 -1.03 -1.09 -1.85 -0.98 0.88 -1.35 -1.77 0.44 -0.68 0.19 -0.1 2.86 0.56 1.93 -0.03 0.14 0.66 -0.67 -1.62 -1.46 -0.79 -0.48 -0.59 -0.65
Smo38798 (PACid_15417519)
-0.1 -0.64 -3.77 -8.65 -4.67 1.41 -1.28 -2.02 - 0.56 0.05 -1.16 2.4 -0.57 - 0.96 -3.58 - -1.41 3.09 -4.17 2.04 -0.52 0.36 - -4.39 -1.03 - -2.7 -2.03 - -3.3
Smo402069 (PACid_15423549)
-0.19 -0.64 -0.8 -0.5 -0.87 -0.84 -0.76 -0.93 -0.47 -0.31 0.0 -0.04 -0.87 -0.5 0.02 -0.67 -1.5 -2.99 2.88 1.81 0.11 0.95 -1.25 -0.66 0.49 -0.31 -1.06 -1.17 -1.16 -0.89 -0.79 -1.03
Smo402120 (PACid_15401988)
-1.38 -0.89 -0.61 -0.74 -0.19 0.31 0.36 0.29 -0.19 -0.43 -1.02 -1.2 -1.14 -2.14 1.26 -0.91 -1.0 -1.16 -0.28 2.18 -0.18 1.18 -1.14 -0.91 0.84 -0.26 1.14 1.18 -1.27 -0.83 -2.0 -1.75
Smo402907 (PACid_15407950)
-0.42 -0.16 -0.23 -0.34 -0.25 -0.4 -0.22 -0.45 -0.3 -0.42 -0.41 -0.47 -0.68 -0.29 -0.83 -0.35 -0.35 0.07 1.04 1.92 0.6 0.13 -0.1 -0.34 1.41 -0.54 -0.32 -0.43 -0.34 -0.43 -0.64 -0.73
Smo404285 (PACid_15408696)
-0.34 -0.38 -0.33 -0.72 -1.25 -0.18 -0.77 -0.62 -0.14 0.07 -0.44 -0.45 -0.49 -0.01 0.24 0.1 -1.46 -0.58 -0.05 2.46 -0.06 1.01 -0.56 -0.27 1.03 -0.53 0.03 0.13 -1.03 -0.76 -0.93 -0.53
Smo404456 (PACid_15410257)
-2.85 -3.44 - 0.27 -0.23 -1.31 -0.15 -2.0 - -2.62 -1.21 0.4 -2.36 -2.38 0.54 - - -0.39 2.16 4.05 - - -3.32 - - - -0.07 -1.06 -1.68 -3.26 -1.12 -2.37
Smo405585 (PACid_15414081)
-3.02 -0.65 0.48 -0.69 -1.44 -2.18 -1.41 -1.21 -1.72 -1.83 -1.24 -2.46 0.07 -1.45 -0.37 0.07 0.27 -0.75 0.53 2.77 -0.36 1.39 0.32 0.51 -0.48 -1.54 -0.11 -2.57 0.42 1.22 0.2 -1.94
Smo407272 (PACid_15417499)
-1.35 - - - - - - - -2.84 -1.26 - -1.57 -2.25 - - -2.23 -1.32 - 4.3 3.32 - - - - - - - - - - - -2.5
Smo409950 (PACid_15406287)
-0.72 -1.17 -1.15 -0.77 -0.88 -0.49 -0.68 -0.86 -0.29 -0.46 -0.25 -0.79 -0.75 -0.75 0.22 0.56 -0.67 -0.64 2.82 1.1 0.11 0.0 -2.48 -1.66 0.3 -0.56 -0.62 -0.83 -0.16 0.11 0.17 0.5
Smo412437 (PACid_15411558)
-1.93 -1.83 -1.03 -1.38 -2.18 -1.59 -1.38 -1.23 -0.85 -1.2 -0.51 -1.15 0.19 -1.34 -0.34 0.25 -0.53 0.1 0.2 2.7 -0.34 1.96 0.06 0.33 1.13 -0.32 -0.56 -0.82 -0.59 -0.22 -0.93 -0.14
Smo412486 (PACid_15411665)
-1.46 -1.83 -1.41 -1.36 -1.58 -1.6 -0.93 -1.15 -0.6 -2.36 -1.17 -1.1 1.2 0.08 1.55 0.35 -1.63 -3.39 -0.16 3.18 0.57 1.59 -3.41 -2.4 1.18 -3.15 -1.67 -0.98 -1.67 -1.5 -1.77 -1.64
Smo415764 (PACid_15422606)
- - - - - - - - - - - - 0.6 - -0.27 - - - 4.55 2.62 - - - - - - - - - - - -
Smo416410 (PACid_15423033)
-0.33 - -2.08 - - 0.69 - - - -1.1 - 0.15 - 0.18 -0.84 1.03 -1.82 -0.18 2.35 3.19 - 2.46 -1.81 - - - -0.48 - -0.88 -0.9 0.07 -
Smo416842 (PACid_15403835)
-0.77 -0.62 -0.7 -0.72 -0.68 -0.81 -0.87 -0.82 -1.05 -1.2 -1.21 -1.07 -0.0 -0.28 0.66 -0.24 -0.45 -0.36 -0.32 2.46 1.29 0.77 -0.38 -0.35 1.57 -1.34 -0.49 -0.49 -0.45 -0.36 -0.52 -0.65
Smo418336 (PACid_15405916)
-2.99 -0.51 1.09 -1.32 0.98 -1.32 - 0.25 - - - - 0.9 -1.25 -1.62 0.79 -0.68 - 3.33 1.76 - - -0.78 -0.79 0.51 - - - -0.4 -0.34 0.99 -0.83
Smo418528 (PACid_15407352)
-0.73 -1.35 -0.6 -0.27 -1.12 -1.12 -0.31 -1.11 -0.06 -0.25 -0.58 -0.18 -4.54 -4.83 -1.1 -2.16 -1.46 0.26 3.52 1.46 -2.4 -1.6 -0.71 0.43 0.99 -0.66 -1.93 -2.51 -1.69 -1.11 -0.82 -0.79
Smo418656 (PACid_15408223)
-2.49 -2.6 -1.84 -1.71 -2.38 -0.87 -3.58 -0.83 -1.19 -2.59 -2.85 -3.04 -1.78 -2.22 -1.3 -1.46 -0.31 -0.02 -1.49 3.61 1.78 1.14 -0.2 -1.0 -1.62 -3.43 -1.57 -0.62 0.35 0.29 0.42 -0.1
Smo419106 (PACid_15407170)
-0.29 -0.49 -0.08 -0.74 -0.06 -0.18 -0.26 -0.4 -0.84 -0.9 -1.21 -1.14 -1.57 -1.48 0.19 -1.6 -1.09 -4.54 -0.8 2.84 0.96 0.95 -0.83 -0.87 2.16 -1.08 -0.38 -1.63 -1.59 -1.65 -0.58 -0.36
Smo419324 (PACid_15408814)
-4.19 -4.41 -1.14 -2.61 -2.62 -3.36 -4.4 -0.79 -1.58 -0.26 -1.77 -1.86 1.4 0.36 0.23 -0.38 -0.94 -1.39 0.32 4.26 - - -2.79 -1.54 - - - - -1.01 -2.29 -2.32 -2.79
Smo420682 (PACid_15414620)
-2.22 -0.75 -0.16 0.06 -0.57 -0.57 -0.57 -0.34 -0.63 -0.47 -2.15 -0.75 -26.84 -3.77 -0.25 -5.9 1.19 - 2.53 0.99 -0.77 -0.85 0.73 0.59 - 0.55 0.81 0.8 0.55 0.52 -0.91 -0.83
Smo421975 (PACid_15419720)
-3.02 -2.87 -4.36 -1.46 -0.73 -0.29 -2.92 -0.9 -1.09 -1.76 -3.06 -1.99 -4.4 -2.82 -0.65 -3.33 -0.53 -2.89 3.25 1.76 -0.83 -2.79 0.36 -0.23 -0.68 1.24 1.65 1.4 -1.32 -0.49 -0.83 -2.52
Smo424810 (PACid_15405176)
-1.77 -0.01 -0.54 0.08 -0.85 0.66 1.2 -1.06 -29.26 -0.06 -1.19 -1.31 -3.48 0.57 1.92 -1.79 -1.21 -1.92 -2.64 3.0 - - -3.68 -0.07 0.52 -1.48 - 1.23 -1.39 -0.62 0.34 -1.71
Smo425043 (PACid_15402107)
-0.64 -0.41 0.12 -0.38 -0.27 -0.2 -0.42 -0.49 -0.03 -0.53 -0.42 -0.65 1.61 -3.35 2.06 -0.96 -1.03 -1.63 -1.52 2.29 0.86 1.81 -2.71 -2.64 -1.7 -1.44 -1.1 -1.02 -1.6 -1.13 -1.62 -1.85
Smo426368 (PACid_15407267)
-1.09 -1.34 -1.37 -0.31 -0.49 -0.21 -0.78 -2.53 -0.99 -0.14 -0.41 -0.98 -3.37 -4.37 1.23 -2.06 -1.14 -0.88 -0.86 3.55 -1.82 2.43 -3.11 -2.48 -0.49 -3.09 -1.04 -2.92 -2.84 -2.52 -0.89 -0.62
Smo431280 (PACid_15421430)
-0.75 -0.63 -0.68 -0.21 0.32 0.37 0.83 0.36 0.37 0.45 0.44 -0.4 0.86 -0.26 -0.63 0.33 -0.37 0.37 -0.62 1.35 -0.79 0.44 -0.03 0.52 -1.51 -0.77 -1.52 -1.62 -0.54 -0.33 -0.35 -0.26
Smo432576 (PACid_15404325)
-0.56 -0.19 -0.15 -0.74 1.16 0.35 0.6 -0.25 -0.28 -0.89 -1.14 -1.49 -1.23 -0.97 2.13 -0.88 -0.94 -0.79 -0.96 2.98 -0.29 - -1.23 -1.32 -2.41 -2.32 0.01 0.18 -1.26 -0.64 -3.01 -2.44
Smo432580 (PACid_15404347)
- - - - - - - - - - - - - - - - - - 3.74 4.22 - - - - - - - - - - - -
Smo437650 (PACid_15419776)
-3.92 -5.48 -2.52 -3.15 -1.93 -3.33 -2.86 -2.54 -3.96 -3.29 -1.57 -2.8 0.08 -1.16 -0.8 -1.09 -5.54 -2.72 3.11 3.16 2.89 0.12 -3.86 -1.75 - -2.64 -2.85 -1.45 -3.88 -1.89 -4.48 -2.96
Smo438260 (PACid_15419675)
-3.02 -2.47 - -1.47 -4.21 -0.74 -1.26 -2.88 -2.86 -2.63 -1.96 -2.11 -0.71 -1.36 0.97 -1.26 -1.49 - 1.35 3.15 0.65 0.78 0.19 -0.24 1.71 0.27 0.05 0.97 -0.88 -0.83 -2.32 -2.8
Smo439471 (PACid_15401806)
-0.8 -1.36 -1.56 -1.28 -0.19 0.1 -0.42 -0.22 -0.29 -0.24 -0.59 -0.97 -0.42 -1.19 0.68 0.66 -0.77 -0.64 2.77 1.63 -0.05 0.16 -1.47 -2.17 0.42 0.04 -0.39 -0.04 -1.21 -1.05 -1.35 -1.68
Smo439531 (PACid_15402431)
-0.85 -0.82 -0.56 -0.83 -0.52 -0.57 -0.62 -0.63 -0.56 -0.58 -0.64 -0.8 0.2 -0.83 1.67 0.54 -0.39 -0.82 -1.21 1.99 0.31 1.66 0.16 0.32 0.75 -0.83 -0.8 -0.51 -0.99 -0.66 -1.12 -1.22
Smo440510 (PACid_15405599)
-0.13 -0.2 0.14 0.04 -0.02 0.15 0.11 0.39 0.25 0.31 0.4 0.24 -0.63 -0.68 -0.31 -0.49 -0.38 -0.06 -0.74 1.56 -0.3 0.92 -0.39 -0.24 -1.65 0.01 0.02 -0.14 -0.43 -0.29 -0.53 -0.35
Smo443302 (PACid_15412880)
-0.11 -0.2 -0.33 -0.41 -0.2 0.28 0.12 0.28 -0.15 -0.13 -0.4 -0.52 -0.32 -0.83 0.9 -0.55 -1.04 -5.95 0.06 2.6 -2.67 -0.65 -1.05 -0.88 0.68 -0.5 0.71 0.94 -1.55 -1.12 -0.77 -1.31
Smo448682 (PACid_15407528)
-1.63 -0.96 -1.15 -0.8 -0.61 -0.62 -0.25 -0.48 -0.26 -0.66 -0.3 -0.91 -2.26 -1.7 1.63 -1.25 -1.03 -0.96 -0.55 2.75 1.52 1.59 -2.53 -2.39 0.69 -1.32 -0.18 -0.2 -2.01 -1.18 -0.61 -0.53
Smo54363 (PACid_15417089)
-3.66 -3.78 -4.45 -3.37 -1.81 -2.23 -3.45 -2.56 -3.94 -1.88 -2.3 -2.99 1.0 -1.08 0.03 -0.29 -2.53 -2.39 4.11 2.57 - -0.86 -1.85 -2.25 -1.99 -1.74 -3.22 -2.4 -3.07 -2.78 -5.63 -2.69
Smo68945 (PACid_15418187)
0.03 -0.09 -0.17 -0.07 -0.1 0.08 -0.02 -0.23 -0.37 -0.28 -0.27 -0.44 0.11 -0.33 -0.41 0.29 -0.39 0.25 0.04 1.85 -0.89 1.42 -0.23 -0.19 -1.54 -0.71 -0.05 0.03 -0.26 -0.31 -0.7 -0.69
Smo69626 (PACid_15418786)
-2.13 -1.88 -3.72 -1.22 -1.24 -1.74 -1.96 -2.71 -1.56 -1.48 -2.55 -2.12 0.17 -2.94 -1.43 0.51 0.34 0.45 1.62 2.18 1.55 0.84 0.09 0.21 1.47 -3.24 -2.5 - 0.23 0.48 0.56 0.53
Smo76880 (PACid_15418893)
-2.74 -13.18 - - -1.45 -1.7 -2.75 - - - -0.52 -2.35 0.68 -3.63 -1.37 1.34 0.52 2.1 -1.54 2.42 1.1 -0.17 1.09 0.45 -0.62 - -2.47 - -0.15 0.86 1.02 1.05
Smo76965 (PACid_15419584)
-1.86 -0.98 -1.49 -1.15 -0.78 -0.59 -0.95 -1.65 -1.37 -1.72 -1.3 -1.87 -0.54 0.04 0.74 0.38 -1.39 -0.7 2.91 2.19 -1.56 -0.21 -0.25 0.45 -0.89 -3.56 -0.71 -1.39 -0.85 -0.64 0.59 0.56
Smo79151 (PACid_15422070)
-1.66 -1.1 -1.68 -1.11 -1.47 -0.99 -0.74 -1.63 -0.38 -2.4 -2.0 -1.36 -0.77 -2.19 -0.48 -0.74 -0.84 -0.2 -1.19 3.4 0.09 2.79 -0.62 -1.0 -0.12 -1.86 -1.8 -1.22 -1.1 -0.94 -2.17 -2.17
Smo81074 (PACid_15405236)
-0.87 -1.47 -1.41 -1.19 -0.9 -0.6 -1.19 -0.7 0.08 -0.65 -0.56 -0.72 -0.35 -1.42 -0.76 0.09 -1.14 -0.88 0.74 2.6 -0.42 1.87 -0.33 -0.21 1.68 -0.11 -0.69 -0.82 -0.25 -0.51 -2.19 -1.41
Smo83360 (PACid_15413470)
-0.73 -0.99 -1.32 -0.92 -0.4 -0.71 -0.39 -0.14 -0.3 -0.22 -0.22 -0.36 -1.18 -0.49 1.32 -0.44 -1.35 -1.19 2.0 2.29 -2.18 -1.86 -1.67 -1.46 -0.43 0.54 1.25 1.07 -1.19 -1.22 -1.54 -1.16
Smo85448 (PACid_15419978)
-1.0 -0.87 -0.9 -0.69 -0.9 -0.47 -0.47 -0.82 -0.75 -0.76 -0.92 -0.81 0.34 -0.54 0.17 0.3 0.17 0.65 0.01 1.99 -0.33 0.38 0.14 0.35 1.02 -0.58 -0.06 0.27 -0.08 -0.19 -0.25 -0.02
Smo85986 (PACid_15401546)
-4.32 - - -2.43 -3.77 -2.76 - -2.67 - -4.22 -3.98 -2.05 - -1.24 0.93 -1.96 - -0.16 3.73 3.68 -2.49 - - -2.25 - - - - -1.3 -2.25 -1.55 -2.93
Smo88990 (PACid_15410417)
-0.62 0.1 0.4 0.21 0.25 1.04 -0.53 0.36 -1.23 -0.63 -0.27 -0.8 -1.03 -0.73 -1.3 -0.63 -0.81 0.66 -0.41 2.85 -1.6 - -0.58 -0.11 -1.42 -1.22 0.47 0.79 -1.24 -0.28 -2.32 -0.97
Smo92029 (PACid_15415387)
-0.22 -2.36 -2.33 -1.77 0.07 -0.37 0.11 -0.85 -2.38 -0.87 -0.24 -1.46 -1.37 -3.65 1.71 -0.32 0.02 -1.16 3.33 1.34 0.83 -1.94 -3.37 -3.51 0.63 -2.38 -1.63 -2.27 -0.45 -1.03 -1.07 -1.78
Smo95560 (PACid_15405618)
-0.48 -1.52 -2.42 -2.45 -0.22 -3.23 -1.56 -0.54 -1.33 -0.52 -0.6 -0.23 0.57 0.32 1.54 1.16 -2.23 - 3.7 1.51 - - -2.69 -2.44 -1.71 -0.36 -5.1 -2.19 -2.48 -3.5 -4.11 -4.03
Smo98161 (PACid_15411430)
-1.36 -1.06 -0.88 -0.73 -0.54 -0.31 -0.49 -0.58 -1.07 -1.19 -1.39 -1.51 -0.33 -0.46 1.45 -0.25 -1.11 -1.14 0.03 2.37 0.65 2.32 -1.02 -0.71 0.65 -0.56 -0.02 -0.14 -1.12 -1.09 -1.96 -1.86
Smo98284 (PACid_15412207)
-1.68 -1.75 -1.94 -1.52 -2.25 -1.22 -1.4 -1.1 -1.93 -1.35 -1.03 -1.85 1.0 0.3 0.71 0.98 -0.15 0.85 2.24 1.52 1.07 -0.04 -0.06 0.26 -0.47 0.09 -0.98 -1.48 -0.24 -0.39 -0.64 -0.75

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.