Heatmap: Cluster_144 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Aerial tissue - Light - ZT1
Aerial tissue - Light - ZT3
Aerial tissue - Light - ZT5
Aerial tissue - Light - ZT7
Aerial tissue - Light - ZT9
Aerial tissue - Light - ZT11
Aerial tissue - Dark - ZT1
Aerial tissue - Dark - ZT3
Aerial tissue - Dark - ZT5
Aerial tissue - Dark - ZT7
Aerial tissue - Dark - ZT9
Aerial tissue - Dark - ZT11
Roots
Root elongation and differentiation zone
Root meristematic zone
Aerial roots and rhizophores
Shoot tips
Microphyll
Strobili
Shoot apical meristem - AC
Shoot apical meristem - Core
Shoot apical meristem - P1
Stem - Top
Stem - Bottom
Whole plant
Aerial tissue - Stress - Dark
Aerial tissue - Stress - High light
Aerial tissue - Stress - Cont
Aerial tissue - Stress - 37C 1h
Aerial tissue - Stress - 37C 3h
Aerial tissue - Stress - 4C 1h
Aerial tissue - Stress - 4C 3h
Smo10077 (PACid_15419008)
2.36 1.41 0.3 -0.26 -0.26 -0.52 0.39 0.14 0.51 0.63 0.75 1.36 -3.23 -1.31 -2.19 -2.22 -0.6 0.55 -0.2 - - -0.87 -1.64 -1.75 -1.12 -0.33 -1.02 -0.94 -0.15 0.12 0.0 -0.68
Smo101888 (PACid_15406335)
1.96 0.86 0.13 0.09 -0.24 0.13 -0.64 -0.44 -0.19 -0.07 0.23 0.81 -1.82 -0.72 -1.58 -0.65 -0.61 -3.35 -0.44 -1.9 0.44 -1.93 -0.53 -0.42 0.58 1.05 0.58 0.79 -0.49 -0.38 -0.71 -0.97
Smo103821 (PACid_15412075)
2.07 0.2 0.11 -0.58 -0.9 -0.42 -1.11 -0.95 -0.36 0.27 0.93 1.68 -1.71 -1.43 -0.75 -0.53 -0.03 -0.07 -0.42 -1.74 0.21 -3.87 -0.26 -0.38 -1.92 -0.5 -0.97 -0.64 0.66 0.77 0.25 0.2
Smo107260 (PACid_15419260)
1.57 0.5 0.28 0.02 0.18 0.39 0.09 0.16 -0.02 0.22 0.27 0.96 0.39 -0.66 0.49 0.02 -0.5 -0.94 -0.29 -2.19 -1.87 -0.52 -0.35 -0.06 -0.91 -0.18 -0.04 0.23 -0.72 -0.53 -0.8 -0.51
Smo111188 (PACid_15408098)
2.2 1.59 0.75 -0.05 -0.33 -0.94 -1.1 0.25 0.07 1.15 1.48 1.48 -1.7 -0.03 -3.19 -1.25 -1.69 -4.59 -1.28 -1.62 -1.11 -5.43 -1.01 -0.23 0.39 -0.67 -0.49 -1.27 -0.72 -0.63 -1.51 -0.89
Smo111272 (PACid_15408897)
2.45 1.41 0.59 0.52 -0.89 -0.95 -0.61 -0.28 -0.04 0.81 0.99 2.08 -3.86 -2.18 - -1.83 -0.34 -1.11 0.43 - -4.69 - -1.65 -2.12 -3.53 -0.56 -1.75 -0.61 0.01 0.3 -0.05 -0.32
Smo111636 (PACid_15411939)
2.18 1.49 0.43 0.3 -0.19 -0.72 -0.42 -0.99 0.02 0.34 0.36 1.52 -2.23 -0.8 -1.31 -2.05 -1.62 -1.33 -0.16 -0.02 0.84 - -1.9 -1.79 -0.2 -0.27 -0.94 0.0 -0.62 -0.31 0.15 -0.45
Smo111647 (PACid_15411962)
1.59 0.95 0.06 -0.39 -1.37 -2.15 -2.13 -1.43 -1.05 -0.02 0.82 1.86 0.59 -1.03 -1.48 0.55 -0.33 0.04 0.15 -2.99 -3.32 -4.83 -0.58 0.25 -2.23 1.14 -2.54 -2.1 0.37 0.18 0.51 0.69
Smo115886 (PACid_15402865)
2.79 2.11 0.77 0.29 -0.57 -1.76 -1.08 -0.65 -0.13 -0.06 1.39 2.83 -8.43 -4.92 -4.08 -8.89 -0.28 -3.41 -4.7 - -6.71 - -2.27 -5.25 -5.02 -2.84 -2.48 -2.59 -0.2 -0.36 -1.28 -2.0
Smo116000 (PACid_15421777)
2.3 1.28 0.24 -0.54 -1.36 -1.41 -1.03 -0.28 0.21 0.96 1.26 2.37 -2.06 -2.37 -3.17 -1.39 -1.74 -0.49 -1.55 -1.81 -0.69 -2.38 -1.44 -1.41 -2.35 -1.37 -2.08 -1.8 0.44 0.35 0.15 0.1
Smo121598 (PACid_15418487)
1.47 1.23 0.45 0.16 -0.42 -1.25 -1.24 -1.25 -0.93 -0.23 0.42 1.36 -3.06 -2.98 -2.04 -0.34 -0.18 0.42 1.27 -6.0 -2.46 -8.53 -0.03 0.37 -3.66 1.22 -0.83 -0.59 0.58 0.46 0.1 0.23
Smo134899 (PACid_15414526)
2.31 1.59 0.87 -0.1 -1.3 -1.86 -1.59 -1.03 -0.73 0.67 1.28 2.67 - -14.62 -7.22 -8.15 -0.68 1.33 -2.48 -6.78 -1.87 -8.1 -1.92 -2.42 -2.24 -0.51 -1.78 -1.21 0.41 0.37 -1.7 -2.6
Smo141846 (PACid_15412753)
1.99 0.96 0.28 -0.0 0.0 -0.17 -0.63 -0.39 -0.19 -0.07 0.26 0.81 -1.69 -0.36 -1.21 -0.68 -0.7 -0.79 -0.4 -4.67 -3.1 -4.41 -0.49 -0.57 -1.63 1.36 1.07 0.95 -0.17 -0.24 -0.35 -0.54
Smo153433 (PACid_15422652)
1.42 1.05 0.58 0.16 -0.18 -0.42 -0.59 -0.54 -0.34 0.1 0.63 1.12 -0.79 0.15 0.42 -0.44 -0.2 0.05 0.03 -0.05 -0.8 -3.36 -0.7 -0.4 -0.65 -0.39 -0.73 -0.68 -0.3 -0.22 -0.01 0.13
Smo154356 (PACid_15402523)
1.55 0.66 0.28 -0.13 -0.32 -0.43 -0.64 -0.48 -0.02 0.26 0.96 1.36 -0.85 -0.56 -0.67 -0.53 -0.07 0.12 -0.42 0.08 0.46 -1.01 -0.96 -0.89 -1.42 -0.4 -1.37 -1.14 0.63 0.79 -0.6 -0.91
Smo155351 (PACid_15405440)
1.85 1.06 0.44 -0.33 -1.36 -2.69 -2.98 -2.46 -1.83 -0.44 0.82 2.15 -1.66 -1.38 -1.71 -1.14 -0.46 -0.54 0.48 -3.81 -0.84 -4.59 0.19 0.9 -0.5 1.4 -3.46 -3.1 -0.44 -0.69 0.64 0.75
Smo164498 (PACid_15410680)
2.28 1.53 0.74 -0.15 -1.45 -2.86 -2.79 -1.29 -0.5 0.48 1.44 2.17 -3.0 -2.94 -5.74 -1.32 -2.17 -1.35 -0.91 -2.08 -1.12 -5.56 -1.66 -0.84 -1.02 1.53 -3.47 -2.56 0.39 0.35 -0.19 -0.32
Smo172264 (PACid_15410437)
2.35 1.31 0.63 -0.02 -0.87 -1.82 -1.66 -1.12 -0.79 -0.07 0.58 1.37 0.82 0.48 -0.12 0.29 -1.25 -0.86 0.77 -2.07 -0.62 -4.78 -1.31 -0.83 -2.58 -0.2 -1.53 -1.92 0.29 0.23 -1.2 -1.62
Smo173139 (PACid_15412523)
1.78 0.81 0.32 0.22 0.2 -0.1 -0.17 -0.02 0.43 0.72 0.99 1.44 -0.77 -1.04 -1.36 -0.48 -0.56 -1.85 -0.15 -6.23 -2.12 -6.39 -0.41 -0.05 -1.48 0.57 -0.65 -0.33 -0.01 0.05 -0.43 -0.57
Smo178031 (PACid_15403879)
2.59 1.19 0.69 0.29 -1.15 -1.96 -0.93 0.06 0.36 0.87 1.26 1.88 -3.36 -6.69 -7.04 -5.0 -2.35 -5.87 -0.9 -1.54 -1.92 -8.3 -3.57 -2.69 -2.35 1.71 -1.65 -1.87 -0.45 -0.42 0.11 0.07
Smo179380 (PACid_15409349)
2.18 1.67 1.05 0.2 -0.73 -2.11 -1.92 -0.92 -0.35 0.78 1.74 2.76 -6.56 -6.15 -7.23 -6.47 -1.41 -0.26 -2.91 -6.8 -3.88 -9.76 -2.43 -2.66 -2.81 -0.11 -1.85 -1.3 0.32 0.22 -0.98 -1.62
Smo180365 (PACid_15412550)
3.04 2.07 0.35 -0.76 -1.42 -1.94 -3.04 -2.99 -2.9 -1.83 -0.06 1.98 -0.96 -0.37 -2.88 0.58 -1.54 -1.22 -0.21 -5.65 -1.42 - -2.62 -2.09 -4.3 -0.79 -1.25 -2.36 0.87 1.29 -1.39 -2.1
Smo183183 (PACid_15419787)
2.49 1.35 1.1 0.57 -1.12 -1.58 -0.82 -0.24 -0.09 1.06 1.46 1.88 -3.59 -5.55 -9.81 -4.97 -2.41 -1.84 -0.46 -0.99 -1.13 - -3.62 -2.56 -2.01 1.42 -2.2 -2.57 -0.77 -0.84 -0.72 -0.07
Smo185898 (PACid_15408628)
1.9 1.03 0.48 -0.57 -1.75 -2.93 -3.2 -2.53 -2.26 -0.38 1.4 2.12 -2.63 -2.99 -3.96 -1.9 -0.96 -0.02 -0.22 -2.33 -1.94 -1.97 -1.41 -0.86 -3.03 1.63 -2.21 -1.8 1.05 1.2 0.21 0.71
Smo231223 (PACid_15415240)
2.62 1.07 0.2 -0.17 -0.08 -0.92 -0.29 0.53 0.77 0.98 1.2 1.91 -1.39 -1.7 -3.56 -1.94 -1.42 -2.96 -1.69 -1.92 -1.33 -3.06 -3.5 -3.5 -0.92 0.22 0.0 -0.3 -0.45 -0.95 -1.4 -1.81
Smo233607 (PACid_15401688)
1.34 1.08 0.51 -0.16 -0.42 -0.94 -0.59 -0.29 -0.06 0.14 0.61 1.45 -0.72 -0.08 -1.11 -0.13 0.06 -0.9 -0.08 -2.21 0.03 -3.58 -0.15 -0.16 0.04 -0.13 -0.12 0.44 0.25 0.26 -1.16 -1.58
Smo267397 (PACid_15410653)
1.9 0.84 0.4 0.25 0.05 -0.12 0.04 0.06 0.35 0.35 0.93 1.27 -2.04 -1.16 -0.96 -1.09 -1.03 -0.93 -1.01 -0.17 -0.46 0.31 -1.44 -1.0 -0.05 -0.35 -0.39 -0.13 -0.53 -0.36 -0.52 -0.8
Smo270291 (PACid_15418923)
1.96 0.76 -0.31 -0.69 -1.28 -2.07 -1.5 -0.77 -0.33 0.81 1.52 2.45 -0.48 -1.15 -1.09 -0.45 -1.56 -1.07 -0.57 -0.79 -2.13 -2.2 -1.04 -0.02 -1.97 0.48 -2.28 -2.06 0.5 0.36 -0.46 -0.64
Smo270998 (PACid_15401931)
1.84 0.87 0.12 -0.14 -0.41 -0.64 -0.59 0.17 0.31 0.58 1.16 1.93 -1.71 -0.14 -0.21 -0.69 -1.07 -1.2 -1.45 -5.52 -1.1 -1.53 -0.8 -0.68 -0.89 0.56 -0.38 -0.48 -0.39 -0.32 -0.28 -0.43
Smo29451 (PACid_15410887)
2.4 1.87 -0.07 -1.5 -2.25 -3.9 -3.27 -2.61 -1.5 -0.05 1.4 2.19 -1.23 -1.95 -2.65 -0.37 -1.72 -0.44 -0.42 - - - -1.73 -0.92 -6.81 0.48 -3.58 -3.2 0.77 0.58 0.81 0.94
Smo402072 (PACid_15401281)
1.79 0.86 0.32 -0.1 -0.2 -0.28 -0.16 0.12 0.2 0.51 0.95 1.52 -0.86 -0.85 -0.35 -0.62 -0.68 -0.76 -0.63 -1.58 -2.72 -2.73 -0.83 -0.74 -2.6 -0.17 0.13 0.31 0.04 0.12 -0.02 -0.3
Smo403293 (PACid_15405795)
2.15 1.02 0.08 -0.44 -0.78 -1.12 -1.2 -0.96 -0.65 -0.33 0.41 1.58 -0.46 0.51 0.3 -0.36 -0.4 -0.42 0.2 -0.67 -3.39 -2.75 -0.5 -0.27 -2.26 -0.19 -0.85 -1.05 0.36 0.42 0.04 0.0
Smo403832 (PACid_15410337)
1.16 0.87 0.17 0.14 -0.57 -0.68 0.19 0.07 0.45 1.09 0.98 1.93 -1.77 -0.89 -0.66 -1.51 -0.78 -2.3 -0.81 -1.19 1.3 -1.48 -1.38 -1.42 -0.41 -0.92 -1.45 -1.94 -0.23 -0.23 0.11 0.09
Smo404340 (PACid_15409417)
2.72 1.9 1.43 0.23 -0.84 -0.85 -1.22 -1.61 -0.46 -0.17 1.11 1.54 -1.91 -1.6 - -0.79 -2.74 -0.01 0.21 - - - - - - 1.55 -0.73 0.17 -2.09 -1.78 -1.23 -2.88
Smo406290 (PACid_15414717)
1.1 0.95 0.53 0.15 -0.09 -0.9 0.07 0.2 0.72 1.11 1.33 1.91 -2.15 -1.45 -1.31 -1.7 -1.05 -1.14 -0.62 -0.52 1.1 -2.45 -1.65 -1.88 -0.57 -0.58 -1.75 -1.87 -0.29 -0.47 -0.27 -0.27
Smo407706 (PACid_15421082)
2.22 1.4 0.09 0.1 -0.26 -0.14 -0.7 -0.36 0.14 0.53 0.97 1.68 -1.98 -2.62 -2.47 -1.65 -0.74 -0.96 -0.25 -3.49 -4.73 -3.59 0.46 -0.25 -1.41 -0.14 -1.22 -1.54 0.38 0.23 0.04 -0.22
Smo407707 (PACid_15421083)
2.34 1.18 0.38 -0.11 -0.08 -0.38 -0.78 -0.26 0.52 0.46 1.35 1.8 -4.12 -2.18 -2.68 -3.33 -1.06 -0.95 -0.51 -0.87 -6.69 - 0.46 -0.72 -3.54 0.27 -1.17 -0.87 0.11 -0.16 -0.32 -0.64
Smo408050 (PACid_15418859)
3.09 1.89 0.27 0.33 -0.3 -0.99 -0.77 -0.8 -0.24 -0.04 0.45 1.37 -1.42 1.04 0.91 -0.67 -3.94 -4.49 -3.34 - -6.19 - -3.42 -4.05 -2.1 0.74 -0.05 -0.48 -4.08 -3.19 -5.47 -7.57
Smo409561 (PACid_15403198)
2.7 0.94 0.53 0.29 0.35 0.32 -0.37 -0.62 -0.3 -0.4 -0.12 0.96 -0.04 1.51 -0.64 0.97 -1.46 -1.39 -2.12 -4.11 -4.84 -2.89 -0.85 -0.59 -1.06 -0.44 -1.22 -1.42 -0.62 -0.64 -2.07 -2.87
Smo419510 (PACid_15410416)
1.32 1.45 0.6 -0.32 -0.97 -1.14 -0.67 -0.3 -0.09 0.66 1.23 2.52 -0.32 -1.83 -0.73 -0.91 -2.11 -1.37 -0.83 -1.53 -0.94 -5.55 -1.76 -1.0 -2.25 1.06 -2.33 -2.22 -0.38 -0.75 -0.08 0.41
Smo422474 (PACid_15418812)
2.68 1.3 0.7 0.02 0.8 -0.28 -1.21 0.17 0.78 1.47 0.44 1.55 -2.27 -3.17 -0.65 -2.15 -2.39 -3.23 -0.14 -1.3 - - -1.29 -1.87 - - 0.87 -1.0 -1.85 -3.37 -0.79 -0.28
Smo425253 (PACid_15403565)
3.18 1.29 -1.2 -2.4 -3.94 -1.78 -1.65 -0.19 -0.34 0.01 0.24 2.38 -5.32 1.13 -3.63 -1.27 -3.81 -2.23 -1.98 - 0.06 - -1.63 0.02 -1.93 -1.21 0.38 -2.18 -0.86 -0.47 -0.41 -1.93
Smo437695 (PACid_15419870)
1.37 0.75 0.51 -0.02 -0.83 -1.31 -0.44 0.17 0.52 1.23 1.7 1.93 -9.22 -6.87 - -4.19 -1.15 -0.81 -1.72 -2.86 1.28 -6.51 -1.57 -2.06 -0.09 0.84 -1.11 -1.13 0.22 -0.03 -0.61 -0.56
Smo438203 (PACid_15419512)
2.1 1.15 0.46 0.07 -0.34 -0.43 -0.56 0.11 0.4 0.46 0.87 1.46 -1.7 -1.66 -2.07 -1.32 -0.75 -1.9 -0.63 -3.55 -3.46 -3.43 -1.11 -1.05 -1.92 0.63 -0.07 0.33 0.38 0.44 0.04 -0.3
Smo441116 (PACid_15405454)
2.0 0.78 -0.74 -1.23 -1.36 -1.61 -1.13 -1.37 -0.83 -0.33 0.56 1.86 -0.41 -1.85 -1.1 -0.46 -0.56 -0.26 0.54 - -2.21 -6.13 -0.43 -0.17 -0.89 0.55 -0.87 -0.61 0.79 0.71 1.14 0.5
Smo441510 (PACid_15408512)
2.1 1.01 0.33 -0.35 -0.39 -0.55 -0.34 -0.25 0.44 0.23 0.87 1.5 -2.34 -1.26 -0.9 -1.31 -1.17 0.81 -0.3 -0.75 -0.87 0.47 -0.61 -0.47 -0.86 -0.35 -0.99 -0.63 -0.3 -0.44 -1.04 -1.32
Smo442023 (PACid_15407574)
1.75 1.14 0.35 0.45 0.12 -0.0 0.02 -0.15 0.39 -0.07 0.49 0.85 -1.27 0.29 0.57 -0.61 0.05 -0.02 -0.1 -2.07 -0.45 -3.29 -0.96 -1.17 -0.89 -0.68 -0.33 0.04 -0.46 -0.25 -0.96 -1.04
Smo443866 (PACid_15416855)
1.88 0.96 0.55 0.22 0.06 -0.11 -0.0 0.09 0.29 0.5 0.78 1.15 -2.63 -0.99 -0.72 -1.51 -1.03 -1.97 -1.05 -0.17 -0.69 -0.18 -1.6 -1.08 -1.18 0.26 0.51 0.41 -0.58 -0.47 -0.41 -0.84
Smo445437 (PACid_15419549)
1.79 0.65 0.05 -0.16 -0.19 -0.53 -1.28 -0.75 -0.57 -0.19 0.22 0.74 0.53 0.76 -0.88 0.36 -0.83 -0.72 0.06 -3.69 -6.38 -6.52 -0.29 0.09 -3.11 0.19 0.57 0.34 -0.05 0.09 0.77 0.23
Smo448386 (PACid_15405275)
1.94 0.55 -0.02 0.09 -0.18 -0.33 0.21 0.31 0.66 1.3 1.09 1.76 -4.0 -3.1 -3.54 -4.26 -0.21 -0.2 -0.58 -4.26 -0.54 - -0.87 -1.94 -2.35 -1.08 -0.11 0.41 0.24 0.06 -0.25 -0.36
Smo66864 (PACid_15411649)
2.46 1.03 -0.33 -0.62 -1.36 -1.77 -0.89 -1.27 -1.03 -1.02 -0.15 1.26 -1.29 -0.91 -2.38 -0.62 -1.46 -0.94 0.78 -1.69 0.19 -3.27 -1.43 -0.71 -0.48 0.89 -0.76 -1.29 0.55 0.62 1.02 0.67
Smo77032 (PACid_15415602)
2.93 1.9 -0.04 -0.59 -1.11 -1.14 -1.02 -0.98 -0.54 -0.08 0.68 1.73 -1.86 -2.19 -1.67 -1.74 -1.67 -0.16 -1.48 0.21 -0.31 -0.14 -1.85 -1.5 -0.62 -1.36 -1.88 -1.67 -0.29 0.04 -1.23 -1.09
Smo78151 (PACid_15419286)
2.22 1.19 0.38 -0.64 -1.02 -1.08 -1.71 -1.49 -2.15 -1.26 0.12 1.36 -0.18 -1.66 -0.94 0.31 -0.38 0.58 0.36 - - - -0.3 0.26 - 0.44 -0.59 -1.0 0.84 0.68 0.38 0.52
Smo79928 (PACid_15405883)
3.39 1.5 -0.65 -0.95 -1.5 -1.3 -2.28 -1.58 -1.98 -1.51 -0.56 0.72 -0.07 0.04 -0.4 1.05 -1.82 -0.28 1.14 - -1.08 -2.31 -1.53 -1.2 -1.15 -1.4 -1.45 -2.26 -0.21 0.12 -2.36 -2.32
Smo85643 (PACid_15421387)
2.42 1.62 0.36 -0.25 -0.26 -0.25 -0.44 -0.12 0.19 0.48 1.15 1.88 -3.95 -4.02 -3.98 -3.26 -1.46 -0.9 -0.79 -9.07 -6.34 -5.98 0.21 -0.6 -1.72 0.12 -1.0 -0.61 0.52 0.21 -0.89 -1.49
Smo99090 (PACid_15413671)
2.47 1.24 -1.1 -1.68 -1.89 -1.67 -0.92 0.2 0.18 0.58 1.04 1.77 -1.36 -0.66 -3.11 -2.27 -2.41 -0.56 -1.46 -6.4 -1.28 -6.85 -2.79 -2.67 -0.49 0.66 1.14 0.75 0.24 0.11 -0.47 -1.0

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.