Heatmap: Cluster_458 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-2.58 -1.32 -2.08 -2.41 -2.94 -1.23 -0.71 -2.56 -1.69 -1.53 0.31 -0.09 0.56 -0.29 -1.25 -0.53 0.41 0.02 0.04 0.14 0.17 0.13 0.3 0.4 0.19 -0.18 -0.06 1.02 1.14 1.17 0.93 0.6 1.2
-3.78 -3.57 -6.4 -5.28 -6.25 -3.62 -0.76 -4.85 -6.48 - -0.15 -0.13 0.35 -0.27 0.02 0.19 1.23 0.04 0.29 -0.71 0.35 0.49 -0.11 -0.93 0.66 0.02 0.4 1.01 1.01 1.15 1.01 0.92 1.38
-0.95 -1.33 -4.88 -3.23 -3.24 -1.6 -1.05 -3.46 -2.31 -0.89 0.62 -0.18 0.27 -0.13 -1.54 0.37 0.47 0.44 0.88 0.68 0.76 -0.34 -0.21 -0.63 -0.92 -0.06 -0.01 0.46 0.95 1.25 0.86 0.24 1.41
-1.52 -0.55 -3.49 -3.68 -2.72 -3.63 -1.8 -2.66 -3.61 -4.12 0.62 -0.66 0.15 - -0.65 -0.3 0.91 0.78 -0.1 0.54 0.47 -0.99 0.84 -3.75 -2.46 0.19 0.27 0.8 1.5 1.83 0.9 0.53 1.36
-3.38 -1.97 -5.78 -3.63 -4.29 -3.56 -1.64 -1.97 -2.98 -1.42 0.59 -0.99 -1.47 -0.9 -1.81 -1.17 1.1 -0.91 -0.11 -0.04 1.1 -0.45 -0.94 -1.24 0.09 0.13 0.38 1.39 1.66 1.47 1.06 0.93 1.73
-3.71 -2.27 -2.43 -2.73 -6.07 -2.95 -1.19 - -6.2 -1.31 -0.25 0.05 0.05 -0.04 -3.79 0.02 0.38 -0.4 0.42 0.11 0.05 -0.27 0.08 -0.24 -0.44 -0.09 0.11 1.27 1.58 1.62 1.0 0.36 1.87
-0.98 -0.84 -2.85 -3.72 -2.54 -1.86 -0.18 -1.6 -1.28 -1.41 0.16 -0.24 -0.07 -0.78 -1.14 -0.87 0.38 -0.66 -0.14 -0.49 -0.04 -0.14 0.77 0.55 -0.29 0.25 0.19 1.15 1.41 1.2 0.85 0.57 1.37
-3.0 -1.85 -1.24 -2.27 -0.72 -0.08 -0.72 -2.81 -3.33 -4.07 0.29 -0.23 0.71 -0.55 -2.96 0.22 0.82 0.17 0.46 -0.06 0.19 0.34 0.08 -0.9 -0.81 0.19 0.52 0.64 1.15 1.28 0.69 0.34 1.24
-0.66 -1.17 -1.31 -1.41 -1.78 -2.04 -0.57 -2.03 -2.9 -2.87 -0.06 -0.29 1.01 -0.4 0.25 0.31 -0.01 -0.12 0.08 0.11 0.08 -0.05 0.04 -0.24 -0.41 0.37 0.4 0.81 1.21 1.07 0.83 0.57 0.75
-1.45 -1.99 -2.6 -2.43 -2.88 -1.95 -1.11 -1.53 -2.73 -1.93 0.35 0.03 0.83 -0.79 -1.54 0.25 1.23 0.41 -0.42 -0.13 0.27 0.17 0.51 -0.21 -0.35 -0.33 0.09 1.0 1.34 0.86 0.59 0.45 1.28
-0.59 -0.34 -0.52 -0.7 -0.68 -0.54 -0.34 -0.93 -1.03 -0.63 0.41 -0.11 0.31 -0.3 -0.31 -0.02 0.5 0.49 0.25 0.29 0.3 -0.17 0.15 -0.56 -0.29 0.07 0.24 0.22 0.54 0.66 0.3 0.15 0.7
-0.8 -0.96 -1.93 -2.11 -1.86 -1.91 -0.92 -2.78 -3.57 -2.95 0.73 -0.27 0.03 -1.39 0.17 0.01 0.93 1.11 0.69 0.89 0.83 -0.16 0.24 -0.87 -0.1 0.15 0.31 0.19 0.74 0.65 0.53 0.41 0.7
-1.5 -1.36 -2.01 -2.69 -2.29 -2.32 -0.42 -2.82 -2.17 -2.49 0.2 -0.05 0.83 -0.21 0.09 0.22 0.02 -0.05 0.06 0.28 0.08 0.06 0.9 0.93 -0.26 0.36 0.19 0.49 0.84 0.77 0.67 0.49 0.93
-0.37 -0.87 -0.9 -1.68 -1.97 -1.91 -0.94 -2.19 -2.23 -2.14 0.18 -0.49 0.95 -0.23 0.21 0.22 0.09 0.2 0.23 0.37 0.32 0.02 0.73 -0.24 -0.41 0.4 0.29 0.65 0.75 0.62 0.79 0.53 0.56
-0.64 -0.85 -1.33 -1.02 -1.01 -0.8 -0.85 -1.35 -1.01 -0.9 0.28 -0.7 0.33 -1.23 -0.56 0.23 0.74 1.07 0.55 0.62 0.84 -0.43 -0.32 -0.26 -0.32 0.24 0.31 0.16 0.58 0.64 0.26 0.24 0.82
-6.74 -4.06 -9.47 -7.2 -7.22 -8.1 -1.88 -6.14 -7.35 -6.67 -0.24 -0.5 0.75 -0.37 -0.59 -1.01 0.75 -0.54 -1.15 -0.98 -1.22 0.16 1.11 -0.72 0.71 0.23 0.37 1.0 1.23 1.72 1.0 1.08 1.98
-0.06 -0.14 -0.55 -0.77 -0.74 -0.51 -0.66 -0.91 -1.23 -0.91 0.33 -0.46 0.34 -0.14 -0.29 -0.04 0.39 -0.09 0.14 0.09 0.04 -0.42 -0.02 -0.21 -0.33 0.37 0.45 0.5 0.62 0.67 0.64 0.4 0.65
-2.56 -2.81 -5.14 -3.42 -5.59 -2.38 -1.15 -3.38 -5.22 -4.24 0.17 -0.91 0.1 -0.9 -0.72 0.1 0.86 0.17 0.11 -0.21 0.58 -0.18 -0.41 -0.36 -0.19 -0.08 0.19 1.15 1.23 1.65 1.0 0.87 1.81
-3.83 -4.16 -6.71 -2.64 -5.58 - -0.44 -4.16 - -3.12 0.35 -0.22 0.12 -3.3 -1.98 0.85 0.69 -0.42 0.52 0.3 0.49 -0.32 -0.03 -1.1 0.78 -0.33 -0.26 1.11 1.22 1.72 1.1 0.66 1.51
-5.43 - - - - - -1.18 - -4.65 - 0.84 -0.82 -0.01 -0.33 -4.72 0.1 1.02 0.11 0.16 0.04 0.31 -0.12 0.44 -0.88 -0.22 0.25 0.57 1.27 1.27 1.61 0.95 0.72 1.55
- - - - -5.82 - -0.7 - - - 0.52 -0.72 -0.26 -1.71 -1.34 0.64 0.68 -0.19 0.41 0.43 0.71 0.13 -0.39 -0.6 -0.16 0.23 0.35 0.77 1.55 1.49 1.06 0.92 1.65
-4.21 -6.43 - -6.41 - - -1.18 -4.84 - - 0.82 -0.35 0.35 -0.63 -0.72 -0.07 0.63 1.48 0.34 0.53 0.72 -0.36 -0.11 -0.67 0.11 0.0 0.31 0.61 1.14 1.45 0.8 0.36 1.37
-3.26 -5.0 - -4.19 -6.44 - -0.93 -4.99 - -5.76 0.21 -0.82 0.26 -0.81 -2.13 -0.14 0.86 -2.48 -0.08 -0.53 0.19 -0.26 -0.26 -0.69 -0.1 0.41 0.57 1.45 1.37 1.58 1.33 1.01 1.98
-3.52 -1.63 -4.34 -4.1 -5.12 - -0.16 -5.72 - - 0.14 -0.65 0.17 0.65 -1.81 -0.58 0.42 -0.28 0.33 -0.32 0.13 -0.48 -0.23 -1.06 -0.31 -0.28 0.17 1.13 1.78 1.66 0.88 0.6 1.96
-4.04 -2.14 -4.47 -4.12 -2.38 -2.19 -1.0 -1.75 -3.24 -1.37 0.52 -0.12 0.6 0.22 -0.04 -0.2 0.11 0.36 0.42 0.24 -0.03 -0.15 -0.16 -0.29 -1.0 0.09 0.24 0.72 1.05 1.58 0.69 0.39 1.67
- -4.06 -2.63 -4.91 -6.61 - -1.04 -3.08 - - 0.07 -0.85 -0.02 -2.16 -3.16 -0.0 0.63 -0.18 0.66 0.06 0.3 -0.23 -0.83 -0.03 -0.67 0.13 0.32 1.17 1.67 1.66 1.2 1.06 1.84
- -2.18 -5.5 -2.35 -3.88 -2.5 -2.26 -3.37 -3.14 -2.25 0.67 -0.36 0.26 -0.68 -2.35 -0.68 0.57 -0.43 -0.46 0.14 0.72 -0.12 0.06 0.02 -1.18 0.31 0.44 1.08 1.35 1.42 1.22 1.0 1.72
-0.87 -0.9 -2.19 -2.12 -2.0 -0.89 -0.89 -3.42 -3.61 -1.84 0.22 -0.31 0.04 0.34 -1.52 0.18 0.5 -0.01 0.36 0.23 0.95 -0.85 1.07 -0.36 -0.29 0.36 0.51 0.84 0.73 0.77 0.65 0.81 0.78
-2.08 -2.97 -4.32 - -4.25 - -1.39 - - - 0.53 -0.72 0.58 -0.35 -0.71 -0.29 1.2 -1.13 -0.09 -0.29 -0.26 -0.6 -0.18 0.23 -0.48 -0.23 0.39 1.37 1.36 1.26 0.99 0.65 2.13
- - - - - - -2.66 - -4.2 - -0.1 -0.88 -0.94 -1.61 - -0.96 1.06 -0.54 0.09 0.17 0.55 -1.37 -1.0 -0.87 -1.58 0.42 0.64 1.57 1.83 1.68 1.45 1.22 2.03
-3.47 -2.69 - - -5.98 -3.9 -1.8 -3.62 - - -0.39 -1.77 0.57 0.24 - 0.73 1.09 -0.37 0.11 -0.54 0.08 0.75 0.11 -0.11 -0.73 -0.01 0.36 1.2 1.35 1.68 1.0 0.62 1.6
-0.23 -0.43 -1.29 -1.0 -1.25 -0.96 -0.62 -1.97 -1.58 -1.22 0.08 -0.58 0.43 0.43 -0.31 0.54 0.04 0.1 0.53 0.03 0.51 -0.71 0.75 -0.53 -0.44 0.19 0.24 0.56 0.77 0.56 0.67 0.62 0.48
-2.29 -1.72 -4.32 -2.53 -3.63 -1.5 -0.76 -1.6 -2.12 -2.33 0.59 -0.19 -0.08 -0.21 -0.99 -0.05 0.58 -0.33 -0.32 -0.14 0.39 -0.02 -0.2 -0.3 -0.37 0.08 -0.01 0.98 1.52 1.36 0.91 0.66 1.66
-2.04 -1.1 -2.84 -2.43 -3.28 -1.95 -0.95 -1.43 -2.03 -1.45 0.27 0.36 0.57 -0.26 -1.68 -0.12 0.46 0.1 0.45 -0.04 0.16 0.22 0.07 -0.11 0.21 0.3 0.5 0.6 1.19 1.12 0.52 -0.05 1.5
-2.44 -1.65 -4.16 -2.79 -3.26 -3.39 -1.38 -3.54 -2.98 -1.72 0.42 -0.55 0.27 -1.55 -1.54 -0.25 0.6 -0.0 0.08 0.08 0.18 0.09 0.27 0.65 -0.46 0.07 0.01 1.13 1.41 1.43 1.11 0.88 1.35
-2.85 -2.46 -6.26 -3.92 -3.37 -2.75 -0.65 - - -3.76 0.03 -0.56 -0.62 -1.82 -0.97 -0.9 0.57 -0.26 0.69 -0.06 0.32 -0.25 -0.26 0.07 -0.93 -0.09 0.24 1.52 1.71 1.55 1.07 0.22 2.04
-2.83 -2.47 -4.29 -3.86 -5.75 -4.28 -2.12 -5.25 -4.78 -5.18 0.95 -0.96 1.43 -0.16 -0.83 0.71 0.59 0.6 0.86 0.8 0.82 -0.76 0.51 -0.88 -2.63 -0.8 -0.51 0.69 1.29 1.26 0.5 0.38 1.27
- -6.6 -6.32 -6.58 -7.1 - -1.67 -5.71 -4.62 - 0.37 0.63 0.14 -0.21 -0.54 -0.42 0.59 -0.02 0.13 0.07 0.84 0.23 -0.11 -1.72 0.37 0.12 0.18 1.14 1.09 1.44 1.06 0.7 1.7
-3.02 -2.95 -2.81 -3.58 -4.8 -2.65 -1.21 -2.75 -5.91 -1.57 0.2 0.36 0.27 -0.59 -1.32 0.78 0.9 0.28 0.83 -0.27 0.25 0.05 0.03 -1.58 -0.37 0.11 0.29 0.83 1.33 1.14 1.12 0.49 1.34
-4.54 -2.41 -4.91 -4.3 -4.69 - -1.63 -5.12 -3.29 -1.1 0.26 -0.44 -0.14 0.13 -1.37 0.64 0.78 -0.36 -0.4 0.21 -0.31 0.16 -0.37 -0.69 -1.21 0.01 0.43 1.2 1.44 1.72 1.05 0.62 1.78
-3.87 -3.47 -5.49 -4.91 -3.85 -4.37 -0.8 -3.49 -1.57 -2.27 0.3 0.0 0.02 -0.35 -3.16 0.21 0.76 -0.0 0.94 -0.09 0.3 -0.16 -0.2 -0.09 0.52 -0.32 -0.14 1.16 1.23 1.43 0.72 0.75 1.55
-4.62 -2.55 -4.58 - -3.69 - -0.71 - -6.33 -1.84 0.41 0.12 0.49 -2.1 -1.45 -0.36 0.57 0.41 0.38 0.45 0.02 0.03 0.14 -0.64 0.21 -0.1 -0.06 1.13 1.37 1.6 1.15 0.57 1.46
-0.56 -0.2 -1.02 -1.25 -1.45 -2.21 -0.94 -1.64 -1.73 -0.97 0.4 -0.63 -0.04 0.0 0.32 -0.26 0.56 0.1 0.02 0.15 -0.1 -0.09 0.45 -0.65 0.01 -0.06 0.13 0.58 0.75 1.02 0.67 0.69 1.18
- -4.91 -5.51 - -6.43 -4.32 -0.83 -3.44 - - -0.14 -0.42 0.14 -0.79 -1.11 0.38 0.99 -3.04 0.99 -0.12 0.68 -0.45 0.16 -1.36 0.01 0.05 0.38 0.91 1.41 1.68 0.97 0.84 1.78
-2.04 -1.46 -3.04 -2.37 -2.34 -0.75 -0.77 -1.19 -1.68 -1.18 0.14 0.17 -0.06 -0.27 -0.39 0.13 0.49 -0.32 0.1 0.29 0.37 -0.2 -0.57 -0.84 -0.65 -0.13 0.07 0.83 1.13 1.49 0.9 0.51 1.62
-3.0 -1.79 -6.16 -3.79 -5.97 -1.92 -3.8 - -3.91 -3.38 0.2 -0.45 0.53 0.82 -3.76 -0.15 1.18 -1.1 0.3 -0.4 -0.5 -0.91 0.2 -0.69 -0.4 0.17 0.53 1.14 1.72 1.4 0.99 0.36 1.78
-0.43 -0.45 -0.69 -1.49 -1.32 -0.93 0.32 -0.87 -1.41 -1.62 -0.35 -0.1 0.31 0.1 -0.33 0.17 0.88 0.2 0.25 0.13 -0.02 0.22 -0.51 0.06 -0.01 0.13 0.4 0.44 0.37 0.76 0.64 0.21 0.63
-3.26 -1.53 -5.59 -5.81 -3.7 -4.18 -1.06 -3.08 -3.36 -2.78 0.8 -0.7 0.4 -0.56 -1.43 0.28 1.02 0.51 0.7 -0.11 0.24 -0.28 0.56 -0.69 -0.08 -0.18 -0.17 0.98 1.31 1.36 0.84 0.43 1.38
-4.19 -3.58 -5.87 -6.89 - - -2.17 - - - 0.09 -1.14 0.18 -1.31 -0.85 -0.07 0.94 0.52 0.25 0.64 0.49 -0.79 -1.85 -1.56 -0.46 0.22 0.24 0.79 1.55 1.87 0.88 0.58 2.21
-1.69 -1.53 -2.64 -3.49 -3.02 -3.46 -0.6 -3.58 -2.95 -2.72 0.32 -0.08 0.13 -0.82 -0.37 0.15 0.65 -0.35 0.67 0.18 0.27 0.56 0.57 -0.01 -0.54 0.19 0.53 0.79 1.22 1.14 0.43 0.33 1.45
-0.7 -0.6 -2.38 -2.14 -2.35 -2.34 -2.12 -3.5 -2.75 -2.68 1.03 -1.23 -0.13 -2.84 0.63 0.33 1.3 1.07 1.12 0.51 0.9 -1.27 -0.23 -1.0 -0.05 0.42 0.75 -0.08 0.3 0.84 0.79 0.47 0.13
-1.49 0.05 -2.72 -2.07 -3.03 -3.21 -1.7 -1.64 -4.53 -3.76 0.33 -1.25 0.3 -1.02 -0.27 0.13 1.16 0.34 1.26 0.55 1.03 -0.25 0.08 -3.32 0.88 0.1 0.49 0.11 0.39 0.85 0.85 0.97 0.32
-0.57 -0.29 -2.33 -1.6 -2.24 -2.06 -1.08 -2.35 -3.5 -2.9 0.59 -0.01 -0.57 -0.44 -0.26 -0.58 1.15 0.27 0.51 0.51 0.36 0.01 0.7 -1.36 -0.61 0.24 0.71 0.46 1.06 0.83 0.5 0.54 1.04
-2.94 -1.69 -4.07 -2.46 -4.19 -2.55 -1.19 -2.36 -3.81 -1.44 0.21 -0.7 -0.04 -0.4 -0.69 -0.24 0.59 0.43 -0.1 -0.32 0.3 -0.58 -1.2 -1.06 -0.04 0.1 0.53 0.76 1.38 1.77 0.99 0.74 1.92
-3.42 -2.77 -6.28 -5.52 -6.03 -3.88 -2.04 -6.17 -7.73 -6.75 0.83 -0.72 0.17 -1.07 -0.49 0.11 0.83 0.66 0.95 0.25 0.69 -0.87 0.08 -2.7 -1.62 -0.0 0.2 0.92 1.46 1.67 1.03 0.5 1.58
-4.74 -4.83 -4.55 -5.81 -5.34 - -0.68 - - -3.0 0.49 -1.03 0.19 0.15 -0.7 0.89 0.39 -0.78 -0.25 0.13 -0.0 -0.01 0.38 -0.69 -0.08 0.08 0.41 0.72 1.33 1.61 1.16 1.11 1.5
-2.0 -1.37 -2.2 -2.13 -2.26 -1.29 -0.63 -1.95 -1.62 -1.53 -0.29 -0.29 0.5 0.05 -2.37 -0.25 0.39 -0.39 0.62 0.08 0.02 0.13 -0.07 -0.17 0.15 -0.1 0.13 1.06 1.33 1.31 0.82 0.53 1.36
-1.49 -1.28 -5.36 -2.11 -2.19 -1.76 -1.39 -1.65 -1.84 -0.82 0.02 -0.24 0.11 -1.05 -1.58 -0.47 0.38 -0.62 -0.0 -0.22 0.08 0.06 -0.64 -0.3 -0.28 0.1 0.2 1.24 1.61 1.43 0.89 0.86 1.7
-0.97 -0.95 -2.21 -1.87 -1.83 -1.46 -0.24 -1.6 -1.36 -1.74 0.13 -0.21 0.28 -0.23 -1.97 -0.44 0.43 0.22 0.12 -0.22 0.27 -0.19 0.59 -0.35 -0.14 0.33 0.44 0.53 1.18 1.26 0.54 0.14 1.56
- -6.59 - - - - -1.02 - - - 0.56 -0.4 -0.13 -0.09 -3.2 0.12 0.89 -0.39 0.13 0.07 0.64 -0.49 -0.52 -1.72 -0.23 0.32 0.18 1.25 1.56 1.49 1.23 0.9 1.85
-0.05 -0.03 -0.82 -1.32 -1.39 -1.24 -1.17 -0.92 -1.09 -1.49 0.46 -0.32 -0.09 -0.19 0.13 0.11 1.12 0.39 0.26 -0.1 0.4 -0.01 -0.5 -1.02 0.88 0.34 0.54 0.3 0.35 0.62 0.5 0.17 0.05
-3.27 -1.95 -3.36 -4.59 -4.26 -3.56 -1.09 -3.94 -2.16 -3.08 -0.03 -0.43 0.68 -0.67 -0.56 -0.18 0.36 0.32 0.27 -0.18 -0.27 0.09 0.34 -0.2 0.59 -0.09 0.13 1.02 1.39 1.47 0.95 0.87 1.38
-0.51 -0.26 -0.75 -1.17 -0.96 -0.42 -0.53 -0.57 -0.64 -0.65 0.39 -0.96 0.39 -0.95 -0.85 -0.35 0.31 0.53 0.44 0.42 0.28 -0.71 -0.57 -0.4 -0.09 0.1 0.21 0.54 0.85 0.95 0.63 0.28 0.84
-0.07 -0.4 -0.73 -1.03 -1.26 -1.81 -0.39 -1.95 -2.27 -2.0 0.31 -0.87 -0.48 -0.56 -0.01 -0.42 0.37 0.53 0.53 0.59 0.58 -0.7 0.22 -0.94 -0.39 0.61 0.61 0.9 0.66 0.59 0.86 0.63 0.58

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.