Heatmap: Cluster_356 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.04 0.66 -1.69 -3.53 -6.03 -5.88 2.76 -6.44 -5.27 -6.18 -1.9 2.47 -0.16 1.63 -3.33 -2.67 -0.17 -2.87 -2.78 -3.34 -2.81 1.43 -5.87 -6.0 0.44 1.97 1.84 -4.94 -5.21 -6.4 -7.55 - -8.32
- - - - - - 1.6 - - - -0.2 2.72 1.68 1.02 -1.01 1.35 -2.13 0.82 0.72 0.32 -1.78 -0.6 -0.38 - 1.8 0.21 1.05 - -3.83 -2.11 -3.93 -3.87 -1.08
-0.22 1.88 -3.42 -3.17 -3.0 - 1.07 -2.82 -4.51 -6.46 -3.25 2.47 - 1.73 -4.84 - -1.62 -2.6 -4.87 -3.94 - 2.19 -4.97 -0.37 0.21 1.96 2.03 -3.15 -0.38 -1.53 -4.71 -4.88 -1.24
-1.84 -0.15 -1.52 -3.79 -3.77 - 2.9 -5.91 -4.88 -4.05 -1.49 2.81 -0.78 2.17 -1.12 -1.27 0.02 -3.99 -2.28 -1.61 -0.93 -1.59 1.18 -1.65 0.66 0.62 0.79 -3.04 -2.36 -4.53 -4.32 -5.16 -3.51
-1.09 -0.91 -0.72 -0.81 -0.7 0.33 1.05 -0.85 -1.29 0.17 0.08 1.73 -1.34 1.21 0.3 0.35 -0.99 -0.17 0.11 0.17 -0.13 0.17 -0.53 -1.1 -0.77 1.05 0.98 -1.01 -0.67 -0.45 -1.0 -1.13 -0.04
-4.1 -5.29 -2.71 -6.87 -4.01 -4.3 2.52 - - - -1.24 2.08 1.02 2.15 -2.17 - -0.12 -1.63 -2.88 -1.17 -1.77 0.53 1.71 0.81 1.51 1.05 1.04 - - - - - -
- -1.71 -3.83 -2.55 - -3.25 1.37 - - - -0.4 2.95 0.13 1.14 1.35 0.12 0.5 0.13 -2.14 -0.4 -1.59 -0.24 1.67 -1.78 1.45 0.77 0.77 - - - - - -4.08
-1.45 0.42 -2.65 -5.08 -2.93 - 2.81 - - -2.42 - 2.99 0.28 1.48 - -3.47 0.36 - - -4.48 - -0.82 1.3 -1.05 -0.02 1.26 1.82 - -5.5 - - - -
-4.64 1.15 -4.29 - - - 2.5 - - - -0.68 2.78 0.35 -0.76 -0.98 0.34 -0.54 - - -2.67 -2.63 -0.51 2.21 -0.82 0.17 1.3 1.76 - - - - - -
-0.52 0.06 -4.16 -2.02 -2.52 -1.22 1.68 -0.42 -1.1 -0.43 -0.32 2.44 -0.39 0.65 -1.52 0.35 0.54 -0.24 0.3 -0.35 -0.45 -1.33 1.12 0.36 -0.28 1.31 1.44 - -4.82 -5.97 - - -
1.65 2.03 -1.47 -4.53 -3.57 - 3.04 -4.57 -3.73 - - 1.59 - -1.02 - - -7.59 - - -4.82 - - -4.85 - - 2.54 2.92 - - - - - -
-2.76 -2.58 - - - - 0.28 - - - -3.44 2.02 -2.05 1.88 -2.98 - 0.47 - - - - 1.13 0.22 -1.24 -1.95 2.07 1.75 1.0 1.94 0.36 -1.9 -0.58 1.18
-7.17 -1.81 -4.62 -7.02 -5.66 -4.02 1.87 -6.29 -6.44 -4.54 -1.21 2.84 0.29 1.35 -0.07 -1.0 -0.08 -0.23 -1.29 -1.28 -0.97 -0.42 1.34 -0.2 1.01 1.3 1.73 -4.88 -2.96 -2.98 -5.47 - -0.58
-2.67 -2.91 - - -3.98 - 2.0 - - - 1.52 2.36 1.14 1.28 -0.99 0.69 0.63 -0.43 0.12 -1.08 -1.05 0.19 0.15 -1.24 1.25 0.97 1.34 - -4.43 - - - -
-0.96 -1.93 -1.81 -1.43 -1.05 -1.2 1.63 -1.54 -1.22 -2.03 0.53 1.72 -0.5 0.71 0.54 0.25 0.43 -0.22 -0.05 -0.38 -0.18 0.09 0.67 -0.13 0.09 1.22 1.19 -1.95 -1.18 -0.43 -1.43 -1.62 -0.68
-1.29 0.89 -4.35 -4.01 -6.36 -6.69 -0.09 -6.07 -6.44 -4.73 -2.06 3.35 -4.46 2.05 -4.29 -5.17 -6.4 -5.54 -9.07 -7.13 -6.35 1.55 -4.91 -3.03 -1.46 1.63 1.47 0.71 0.03 -0.99 -3.16 -1.27 0.88
-2.28 -0.0 -5.25 -5.31 - - -0.16 - -7.08 - -1.75 3.05 -5.34 1.4 -3.75 - -5.82 -6.0 - - - 1.23 -3.11 -2.12 -1.39 2.04 1.71 1.32 0.73 0.09 -2.56 -0.22 1.46
-1.37 -0.75 -5.96 -6.18 - - 1.37 - - - -0.58 2.68 0.81 1.62 -0.4 -0.16 0.49 - -4.43 -1.69 -4.46 0.27 2.0 -3.65 1.85 0.74 1.36 - -2.62 -4.44 - - -0.54
0.03 1.02 -2.08 -2.9 -1.45 -2.75 -0.42 -2.65 -1.92 -2.46 -3.51 2.52 -0.79 2.44 - -4.88 -1.73 - -5.15 -5.21 -4.86 2.03 1.08 -1.64 1.35 0.86 1.34 -5.87 -1.92 0.12 -2.99 -4.65 -0.95
0.19 1.44 -4.69 - -2.92 -3.59 2.23 - -4.84 - 0.06 2.9 0.4 -0.85 -0.85 -1.94 -1.07 - -3.46 - -2.5 -0.7 -1.56 - 1.81 1.76 2.13 - - - - - -
-4.49 -1.19 -5.21 -8.25 -7.08 -7.28 2.27 -4.86 -8.52 -8.16 -0.39 2.48 0.84 1.36 -1.23 -0.36 0.8 -0.89 -0.32 -0.75 -0.51 0.75 1.49 0.32 0.36 0.91 0.97 -8.44 -3.7 -1.85 -6.69 -5.17 -3.57
-2.82 -5.06 -3.05 -6.05 -4.57 -4.39 2.29 - - - 0.04 2.54 -0.21 1.72 -0.79 -1.17 -0.52 -1.37 -0.7 -2.03 -1.73 -2.06 0.32 2.79 1.14 0.23 0.53 -4.45 - -5.38 -4.47 -3.67 -
- - - - - - 2.57 - - - 0.08 2.89 -0.03 1.25 - -1.16 -0.03 -2.58 - -1.16 -2.72 - 0.03 -0.58 2.43 1.47 1.67 - - - - - -
0.51 2.64 -0.89 - 0.2 0.32 1.14 -1.19 -4.41 0.57 - 2.23 - -2.0 - - - - - - - - - - - 2.53 2.91 - - - - - -
-5.03 -1.28 -5.12 - -5.43 - 2.19 -4.42 -6.16 - -0.75 2.21 0.28 -1.35 -1.98 -1.43 1.32 -4.08 -2.18 -2.93 -1.89 -0.75 2.77 -0.76 1.48 0.58 1.46 -6.23 -0.83 0.11 -4.27 -3.8 -1.2
-3.55 0.34 -3.65 -5.4 -4.22 - 2.65 - -3.71 -3.47 -2.33 3.22 0.29 1.4 -3.03 -1.01 0.02 - - -3.71 -3.68 -0.28 1.24 -0.55 0.67 0.54 0.75 -1.99 -1.43 -2.52 -3.34 - -1.39
-4.3 -2.96 -7.39 - - -6.73 2.19 -7.42 - - 0.31 2.17 -0.55 1.5 -0.23 0.33 -0.11 0.06 -0.8 -0.5 -0.21 0.25 1.51 1.26 0.43 0.3 0.71 -3.72 -2.22 -0.31 -0.93 -1.51 -3.0
0.63 0.82 -0.39 -1.1 -4.91 -3.69 2.7 -2.4 -1.98 -2.78 -1.86 2.66 -1.61 -2.07 - - -3.47 -2.67 - - - 0.97 -2.87 - -1.44 2.41 2.52 - -4.47 -3.58 - -6.22 -2.55
-2.25 -0.22 -4.94 -6.28 -5.21 -6.38 2.19 -7.77 -8.05 -7.35 0.32 2.3 0.73 2.05 -1.34 0.48 -0.1 0.35 0.35 -0.16 0.32 -0.33 0.63 -2.51 0.81 -0.16 0.31 -5.02 -2.07 -0.42 -2.06 -3.79 -2.78
-2.65 -0.12 -5.5 -4.69 -6.58 -6.99 2.17 -7.63 -6.58 -5.7 0.45 2.38 0.33 1.99 -4.62 0.12 -0.08 0.53 0.5 0.17 0.27 0.53 1.06 -1.2 0.4 -0.71 -0.51 -4.86 -0.84 -0.79 -3.78 -6.26 -1.43
1.2 2.41 -0.6 -0.87 -3.25 -1.52 2.77 -2.94 -2.83 - - 0.37 -0.29 -1.57 - - 0.19 - - - - -0.21 -1.69 -1.82 0.77 1.81 2.52 - -2.88 -1.46 -5.36 -5.09 -3.04
- - - - - - 2.48 -3.44 - - 0.5 2.76 0.66 1.03 -0.08 -0.17 -0.15 - -0.7 -0.44 -1.32 0.68 1.48 0.4 1.37 0.21 0.31 - - - - - -1.64
-5.77 -0.61 -6.92 - -5.9 - 3.13 -7.49 - - -1.12 2.83 0.08 1.22 -3.64 -1.11 0.1 -1.61 -2.09 -3.93 -2.38 -0.61 0.66 -1.47 0.61 1.12 1.13 -2.11 -0.56 -1.61 -2.12 -4.96 -2.96
-2.61 -0.49 -4.14 -4.06 -5.66 -4.3 2.12 -6.48 -6.43 - 0.23 2.08 1.07 1.28 -3.35 -0.54 0.85 -1.15 -1.27 -2.23 -1.65 0.95 0.7 -1.62 1.42 1.24 1.56 -3.14 -1.46 -0.88 -1.94 -2.28 -1.75
- -3.58 -3.96 - - - 3.15 - - - -2.38 3.34 -2.48 1.52 -3.55 -4.96 -1.88 -3.8 -2.44 - -2.93 -0.77 -0.19 -1.22 -0.11 1.82 1.73 - -5.71 -4.38 - - -4.23
- -4.99 -6.0 -8.05 - - 2.08 - - - 0.16 1.93 0.76 1.46 0.79 -1.96 0.46 0.37 0.0 -0.23 -0.17 -1.38 0.51 -2.13 1.05 0.9 1.16 -2.4 0.03 0.24 -2.16 -5.28 0.14
-2.77 -1.16 -3.44 - -4.24 - 3.8 - - - -2.55 2.55 0.22 -0.03 -3.03 -3.12 -0.12 - - - - -1.03 0.01 1.24 -0.67 1.13 1.24 - - - - - -
1.03 2.19 -1.95 -3.94 -5.59 -4.88 2.8 -5.38 -6.01 -6.91 -4.17 2.57 -1.86 -0.06 -4.03 -9.11 -2.61 -9.53 -8.47 -9.12 -9.35 -0.49 0.15 -5.98 -0.65 1.66 2.06 -4.96 -0.18 -1.25 -5.8 -7.95 -1.5
-5.41 -2.64 -6.13 -7.94 -8.28 - 1.98 - - - 0.4 2.04 0.9 1.15 0.63 0.14 0.62 -0.08 -0.06 -0.4 -0.41 -1.2 1.06 2.24 0.43 0.61 0.7 - - - - - -9.64
- -3.17 -4.77 -6.76 -3.41 -4.33 2.11 -2.16 -1.19 -3.62 0.2 2.22 0.8 1.35 -0.26 0.6 -0.97 -1.64 -0.34 -0.41 -0.23 -0.78 -0.54 -0.07 2.09 1.09 1.48 - -5.24 -1.96 -4.17 -6.2 -2.32
-2.13 -0.08 -3.58 -5.37 -5.37 -6.73 2.44 -6.18 -5.17 -6.74 0.21 2.31 -1.93 0.98 -3.29 -1.84 -2.24 -1.72 -0.93 -1.48 -1.26 0.63 -3.28 -3.33 0.42 1.55 1.6 0.26 -0.08 -0.38 0.26 0.21 0.43
- -2.8 -4.8 - - - 2.81 -0.37 - - -3.36 3.63 0.11 1.48 - - -0.32 - - - -1.23 - - - 2.1 0.92 0.34 - - - - - -
-3.9 0.77 -3.58 -3.34 -3.57 -4.12 2.55 - - - -2.63 2.73 0.75 1.28 -2.97 -3.74 0.16 -1.57 -3.41 -5.06 -2.45 0.12 2.1 0.15 1.29 0.57 0.78 -6.9 -6.81 - - - -6.95
-1.72 0.91 -4.01 -4.17 -5.81 -6.04 0.3 -4.88 -4.25 -4.79 -3.65 2.4 -1.34 1.05 -2.78 -6.78 -0.48 - - -6.32 -8.75 2.2 1.26 -1.74 0.18 2.05 1.77 -0.22 0.72 -0.86 -2.65 -1.83 0.16
-6.84 -3.9 - -4.88 -7.55 - 1.85 - - - 0.5 1.76 0.23 0.07 1.05 1.43 1.12 -0.22 0.45 -0.15 0.48 0.44 -1.64 0.99 0.55 1.44 1.43 -4.21 -5.12 -3.58 - - -3.49
-1.23 -0.78 -2.47 -2.32 -1.92 -1.15 2.11 -2.52 -2.21 -2.33 0.62 2.16 -1.3 1.54 -0.03 0.95 -0.48 0.27 0.09 -0.05 0.06 0.8 -0.42 -0.58 -0.2 -0.49 -0.44 -1.19 -0.69 -0.41 -1.23 -1.18 -0.67
-0.87 0.06 -1.74 -1.02 -1.25 -0.67 1.2 -1.87 -1.29 -0.01 0.72 0.89 -0.65 0.56 -0.23 0.92 0.05 1.02 0.85 0.24 1.04 0.11 -0.15 -0.76 0.11 0.94 0.96 -2.47 -2.12 -1.54 -2.07 -2.52 -1.16
0.04 1.8 -1.9 -3.61 -5.91 - 1.0 -6.74 - - -5.85 0.84 -1.54 -1.98 -3.3 - -1.14 - - - - -1.91 0.77 2.02 -0.07 1.65 1.72 0.89 1.1 -0.32 0.46 1.62 -0.98
-0.19 0.98 -4.3 - -6.12 -5.76 1.31 -8.0 -5.79 -5.93 -0.07 2.25 0.87 1.02 -2.56 -1.38 0.58 -1.68 -1.01 -1.41 -1.04 0.87 0.73 -0.29 1.15 1.42 1.67 -2.72 -1.72 -1.27 -2.02 -2.65 -0.75
- -4.47 - - - - 1.65 - -6.59 - 0.26 2.83 -0.52 1.07 0.22 1.08 0.07 0.03 0.25 0.61 -0.15 -1.36 0.26 -0.38 0.82 1.31 1.65 - - - - - -
1.15 3.01 -3.4 -4.95 -4.45 -3.55 2.02 - -4.71 -1.11 -3.18 1.11 -5.98 1.62 - -5.01 -3.42 - - - -3.99 -1.24 -2.01 -4.69 -1.45 1.88 2.9 - -3.36 -4.9 - - -5.36
-0.79 -0.14 -1.83 -3.61 -2.73 -2.04 2.51 -3.12 - -1.21 0.1 1.57 -1.31 0.47 1.22 0.11 -1.61 0.24 -0.01 -0.47 -0.49 -1.73 0.84 -3.16 -0.02 1.59 1.76 -2.47 -1.83 -0.67 -5.26 -4.47 -0.78
-0.02 1.58 -1.66 -1.78 -3.42 -1.87 1.42 -3.06 -4.14 -1.36 -1.89 2.58 -0.65 0.71 -1.76 -1.98 -0.62 -4.63 -4.0 -3.8 -3.54 1.68 -1.28 -2.84 1.42 1.51 1.52 -2.25 -0.44 -0.42 -2.76 -3.36 -0.41
- -1.94 -1.61 - - - 2.97 - - - -2.14 3.29 -0.22 1.6 -2.08 -2.75 -0.17 -1.01 -3.69 -1.3 -1.73 -3.68 0.38 -2.6 1.28 1.02 1.07 - - - - - -
-0.75 -0.62 -2.65 -3.73 -5.99 -7.49 1.94 -4.86 -5.67 -9.97 -3.0 2.59 0.73 1.53 -4.95 -5.43 0.05 -3.6 -7.05 -7.12 -7.09 1.65 1.63 -2.03 0.66 1.21 0.8 -1.84 -2.1 -1.02 -0.66 -1.15 0.58
0.4 0.54 -1.2 -4.78 -6.24 -4.21 1.68 - - - - 3.82 - 0.32 - - -3.6 - - - - 0.36 -3.12 -1.31 -1.02 2.19 2.05 -5.32 - -5.12 - - -4.98
-3.43 -3.23 -4.8 -4.58 -5.15 - 1.26 -5.69 -4.25 - 0.78 1.52 0.6 -0.01 -0.11 0.63 0.43 0.41 0.27 0.16 0.56 0.5 1.43 1.46 -0.57 1.55 1.14 -3.13 -1.47 -1.44 -2.49 -3.03 -1.35
-3.93 -2.33 -6.56 - -7.03 - 1.76 -8.62 -8.11 - -0.25 2.82 0.19 2.13 0.24 0.35 0.54 -0.93 -0.7 -0.72 -1.02 0.24 1.27 0.41 0.9 0.14 0.47 -5.96 -3.7 -1.94 -5.5 - -3.34
0.29 1.66 -1.05 -1.79 -1.42 -0.16 1.12 -0.97 -0.34 -0.83 0.62 1.03 -1.43 -0.18 -0.2 -0.27 0.08 0.74 -0.07 0.32 0.04 -0.86 0.21 -2.24 0.31 1.37 1.67 -5.0 -2.95 -1.6 -5.85 -5.34 -0.77
0.32 1.42 -2.5 -2.36 -3.74 -3.27 2.17 -4.39 -4.88 -3.64 -3.23 2.54 -1.89 1.21 -5.21 -3.64 -1.31 -4.97 -5.45 -5.24 -6.28 0.64 -1.02 -1.52 -0.65 2.1 1.84 -3.19 -0.62 -0.17 -3.66 -3.32 1.01
-4.25 -2.25 -3.94 -5.67 -4.35 -4.85 1.93 -5.45 -5.69 -5.0 -1.08 1.0 0.55 1.38 0.88 1.94 -0.21 -1.01 -1.77 -2.87 -2.53 -0.7 1.65 1.88 -0.03 0.56 0.27 -0.91 -0.95 -0.57 -1.09 -0.69 -0.71
-3.75 -1.15 - -4.74 - - 1.84 -2.63 -3.45 - -0.71 1.65 -0.65 1.35 -1.45 -2.13 0.81 - -2.07 - - -0.56 1.84 -1.29 1.58 1.28 1.56 -1.61 0.1 0.52 -1.21 -0.55 1.06
-2.27 -4.59 -2.86 -3.68 -4.81 - 2.52 - -4.91 - -1.2 2.77 -0.09 2.47 -0.92 -0.34 -1.99 -0.04 -1.53 -0.79 -1.4 -1.08 1.21 0.05 0.06 0.45 0.91 -4.58 -3.09 -2.58 -2.49 -1.09 -4.41
-2.22 -0.82 -2.92 -3.76 -3.35 -2.8 1.21 -3.81 -3.14 -3.38 1.27 1.49 -0.1 -0.59 0.12 0.05 0.17 0.66 0.77 0.29 0.75 -0.18 0.89 -0.84 0.56 1.42 2.0 -4.64 -1.48 -1.64 -4.86 -8.01 -0.45
-0.73 0.91 -5.42 -7.11 -5.76 -4.66 2.57 - - -3.97 -1.1 2.38 -1.18 1.98 -1.33 -0.78 -1.06 -1.1 -1.36 -0.79 -2.98 -0.67 -1.04 -3.75 -0.56 1.37 1.97 - -2.05 1.29 -5.59 - -1.87
- - - - - - 2.78 -1.28 - - - 3.32 0.73 - -1.42 0.07 -0.68 - 0.42 -1.52 -1.49 -2.36 -1.13 - 1.67 1.34 1.66 -4.09 -2.93 - -4.1 - -2.33
-1.72 -2.44 -1.72 -1.62 -2.05 -1.79 2.51 -4.77 -4.11 -2.09 -1.41 1.84 -2.04 0.67 0.62 -0.94 -0.04 -1.63 -0.99 -1.21 -0.98 0.25 0.77 -2.13 0.06 0.86 1.34 0.14 0.08 -0.3 -0.22 -0.28 0.64
1.03 2.03 -3.3 - -4.89 - 3.05 -3.38 - - -4.43 2.34 -6.14 -1.88 - - -5.58 - -5.08 - - 0.35 0.07 -5.31 -1.43 1.88 2.41 - -3.93 -0.18 - - -2.21
0.12 1.56 -0.69 -0.94 -1.56 0.17 1.73 -1.8 -1.48 -0.7 -1.53 1.87 -0.51 0.96 -0.61 -0.23 0.01 -2.39 -2.5 -2.09 -1.98 -0.37 1.69 -0.27 0.12 1.15 1.21 -2.87 -1.81 -1.43 -2.61 -3.61 -1.84
-4.92 -2.23 - - - - 3.22 - - - -1.49 2.59 -1.12 1.2 - -0.77 -2.73 - -1.88 - -0.74 0.59 1.16 1.63 -0.11 1.24 1.32 - - - - - -3.79
- -3.08 -6.4 - -7.92 - 1.82 -5.43 - - -1.41 2.91 0.76 1.41 0.1 -1.58 0.65 -0.8 -1.52 -2.21 -1.94 -0.28 1.43 1.68 0.32 1.21 1.3 - - - - - -
-3.28 -0.28 -5.58 -6.49 -6.97 -5.72 2.32 -6.98 -8.08 -4.3 0.14 2.53 -0.77 1.73 0.05 0.17 0.03 -0.3 -0.56 -0.63 -0.37 0.02 0.94 -0.48 0.33 0.97 1.41 -7.66 -3.26 -2.0 -6.38 -9.31 -2.19
- - - - - - 3.07 - -2.14 - -3.68 3.54 -1.48 0.09 -1.13 - 0.5 - - - - -0.85 0.97 - 0.91 1.46 1.08 - - -3.72 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.