Heatmap: Cluster_299 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - 0.46 - - - 4.41 - - - 2.24 - - - - -2.53 - - - - - - 1.99 - 0.0 -1.15 - - - - - -
- - - - 1.54 - - 4.64 2.35 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.51 3.35 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.3 - - - - - - 2.62 - -1.73 - - - - 0.1 - - - -1.99 - - - - - - 2.46
- - -1.43 -1.68 -0.18 -0.06 - 4.03 2.26 2.48 -0.86 - - - - - -4.72 - - - - - -0.02 - - -2.86 -1.24 - -0.74 - - -0.93 -0.88
- - - - - - - 3.72 3.74 - - - - - - - -1.16 - - - - - - - - - - 1.97 - - - - 1.06
- - - - - - - 4.25 3.15 - - - - - - - -1.66 - - - - - - - - - - - - - - - 2.25
- - - 3.68 0.8 - - - 4.2 - - - - - - - - - - - - - - - - - - - - - - - -
- - -1.57 - -0.79 - - 4.42 3.42 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 3.83 2.68 3.63 - - - - - - - - - - - - - - - - - - - - - - -
-0.01 1.46 1.17 1.52 0.43 3.4 - 3.34 0.29 - - - - - - - -3.53 - - - - - - - - - - - - - - -0.34 -
-2.27 0.02 -0.0 0.33 0.21 2.08 -0.99 3.37 3.04 2.28 - - - - - - -6.76 - - - - - - -2.81 - - - -3.49 - - - - -
- - - - -4.49 - - 3.29 2.85 3.02 -0.31 - -0.43 - -0.46 - -1.25 - - - - -0.33 -1.17 -2.3 - -0.59 -0.63 - 0.01 -1.08 -2.91 -1.42 -1.43
1.18 1.45 -0.34 -0.8 -1.28 -1.83 -0.23 2.78 2.12 1.64 -4.4 0.67 -1.65 -0.69 -4.25 -6.26 0.22 -6.05 -8.88 -8.94 -6.71 -0.63 -0.48 -2.92 -0.57 0.34 0.32 -2.8 -1.07 -0.92 -2.41 -3.07 -0.3
- - - - - - - 4.37 3.63 - - - - - - - - - - - - - - - - - - - - - - - -
-0.37 -0.97 -0.06 -0.28 0.07 0.0 -0.6 3.36 2.1 1.94 -1.94 -0.59 -1.9 -1.44 -1.37 -1.11 -2.25 -2.79 -2.9 -2.61 -1.3 -1.53 -2.16 1.55 -1.2 -3.11 -2.99 -1.86 -2.53 -2.67 -2.41 -3.88 -1.51
-0.47 -0.78 -0.31 -0.62 -0.52 -0.74 0.32 2.28 1.37 0.74 -2.64 0.27 -0.74 -0.55 -1.91 -3.5 0.44 -3.22 -2.86 -4.09 -2.81 0.54 0.09 -1.96 0.13 -0.09 -0.04 0.29 0.6 0.41 0.46 0.4 0.3
-2.12 -4.58 0.94 0.77 0.78 -1.79 0.16 3.07 2.18 2.18 - -0.61 0.17 -1.45 -3.71 - -1.57 -5.22 - - -6.36 -1.04 -2.96 0.32 0.74 -2.92 -2.43 -2.38 -0.41 -0.72 -3.12 -2.03 -2.87
1.0 0.04 0.24 -0.4 -0.42 -0.79 0.83 3.39 2.57 2.26 -7.86 -1.81 -0.51 -4.3 - - -0.77 - - - - -1.22 -3.42 -4.57 0.12 -4.49 -2.9 -5.58 -6.51 -7.29 -9.66 -6.4 -2.44
- - -0.27 - 1.71 2.57 - 3.77 3.17 - - - - - - - -1.52 - - - - - - - - - - - - - - - -
0.67 -0.26 -0.67 -0.5 0.27 0.09 -0.11 3.2 2.97 1.39 -2.45 -1.18 -1.63 -3.77 -2.45 -3.54 -0.72 -1.51 -2.48 -4.28 -3.83 -1.83 -2.31 -2.7 -0.4 -1.49 -1.57 -2.94 -1.4 -1.42 -1.46 -2.5 -1.4
- - - - - - - 4.74 2.66 - - - - - - - - - - - - - - - - - - - - - - - -
-0.75 -1.55 -1.5 -1.83 -1.37 -3.32 0.05 3.72 3.38 1.95 -2.47 -1.9 -2.29 -2.42 -6.65 -3.38 -4.35 -1.99 -1.83 -3.04 -2.62 -3.74 -5.19 -6.32 -2.01 -5.61 -4.43 -5.54 -5.86 -4.95 -5.28 -4.81 -4.44
- - - - - - - 4.34 2.79 - - - - - - - - - - - - - - 2.54 - - - - - - - - -
- - - - - - - 3.61 4.38 - - - - - - - - - - - - - - - - - - - - - - - -
- - -0.49 3.21 1.95 - - 2.06 3.91 - - - - - - - - - - - - - - - - - - - - - - - -
- 0.51 - 1.0 0.28 - - 4.35 2.39 1.48 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.61 3.1 - - - - - - - - - - - - - - - - - - - - - - - -
- - 2.06 - - - - 4.56 2.38 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.53 3.3 - - - - - - - - - - - - - - - - - - - - - - - -
0.59 -0.1 -0.16 0.09 -0.03 0.22 0.15 2.93 3.21 1.52 -3.56 -0.16 -1.08 -1.03 -2.92 -4.37 -2.58 -4.33 -4.97 -4.79 -5.25 -2.43 0.28 -1.2 -0.04 -2.54 -2.89 -6.66 -6.52 -6.79 -5.56 -5.02 -7.97
- - - - 1.31 - - 4.93 - - - - - - - - - - - - - - - - - - - - - - - - -
- -0.03 - - -0.74 - - 2.83 3.68 - - - - - - - - - - - - - 3.29 - - - - - 0.76 - - - -
0.21 0.38 -0.78 -1.04 -0.33 0.5 -0.6 2.32 2.36 1.72 -4.32 0.35 -5.7 -1.38 -3.59 -3.68 -5.7 -3.76 -5.37 -6.08 -4.65 1.33 -3.34 -2.7 -2.52 -1.22 -2.61 0.25 -0.32 -0.61 1.13 0.98 -0.39
0.41 -0.5 -0.87 0.22 0.93 0.88 0.47 3.55 2.85 -0.8 - - -0.56 - - - -4.25 - -0.67 - - 0.06 - -0.21 - - -2.98 - -1.47 -1.59 - - -0.93
- - - - - - - 3.56 3.33 - - - - - - - -0.1 - - - - - - - - - - - - - - - 3.36
- - - 3.46 - - - - 4.46 - - - - - - - - - - - - - - - - - - - - - - - -
0.18 0.37 0.42 0.65 0.81 0.53 0.52 2.18 2.51 2.45 -1.73 -0.14 -6.96 -0.79 -2.47 -2.21 -3.04 -2.3 -2.22 -1.87 -2.35 -1.85 -5.34 -4.04 -3.94 -0.14 -0.1 -4.95 -0.77 -0.58 -3.22 -3.43 -1.51
-2.67 -2.11 -3.75 -3.69 -3.6 -1.0 -2.82 1.59 1.37 2.56 -4.96 -1.33 -3.99 -1.56 -3.52 -3.77 -5.19 -5.37 -5.21 -6.28 -5.24 -3.58 -5.08 -1.24 -3.73 0.43 0.26 1.69 2.24 0.54 1.39 1.6 -0.1
- - - 0.78 1.03 - - 4.87 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
3.17 - - - - - - 4.05 2.89 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 1.85 - - 4.04 3.5 - - - - - - - - - - - - - - - - - 0.69 - - - - - -
- - - - 1.3 - - 4.64 - - - - - - - - 0.24 - - - - - - - - - - 2.15 - - - - -
-1.08 -2.06 -2.09 -2.02 -1.66 -3.24 -0.43 2.75 2.06 1.58 -3.05 -0.94 0.54 -1.53 -0.15 -2.21 -0.3 -4.81 -3.77 -4.98 -3.65 1.19 -2.87 -0.66 0.77 -2.33 -1.89 0.08 -0.84 -0.4 -0.07 0.8 0.91
- - - - - - - 4.79 - - - - - - - - 2.44 - - - - - - - - - - - - - - - -
- - - - - - - 3.92 3.76 - - - - - - - - - - - - - - - - 1.11 1.12 - - - - - -
- - - - 0.88 - - 4.96 - - - - - - - - - - - - - - - - - - - - - - - - -
-0.24 -1.51 -1.18 -1.86 -1.49 -3.05 1.08 3.55 3.07 2.34 - -0.59 -2.33 -2.85 - - -3.83 - - - -8.47 -0.83 - -3.66 -1.7 -2.02 -1.62 -4.89 -2.32 -4.11 -9.5 -7.06 -1.22
- - - - - - - 4.37 3.63 - - - - - - - - - - - - - - - - - - - - - - - -
-0.19 -0.02 0.49 0.91 0.7 -0.05 -1.09 2.29 1.56 1.52 -2.02 -0.2 -0.8 -0.88 -1.39 -1.83 0.07 -0.87 -2.3 -2.46 -1.57 0.59 0.04 -1.1 0.49 -0.65 -0.27 -0.78 -0.67 -1.49 -1.04 -1.32 -0.89
- - - - 1.03 - - 4.71 2.24 - - - - - - - - - - - - - - - - - - - - - - - -
-0.23 -0.48 -1.3 -2.2 -1.91 -3.08 1.57 3.2 2.55 1.56 -5.37 0.2 -0.12 -1.72 -7.69 -8.78 0.58 - -7.14 -7.79 - 0.22 -1.29 -4.04 1.08 -3.01 -1.73 -2.96 -1.2 -3.27 -5.84 -5.18 -0.48
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
0.44 0.17 -0.79 -1.89 -2.29 -2.9 0.93 2.41 1.9 1.24 -3.98 -0.1 0.51 -2.17 - -4.82 0.53 -7.98 -7.08 -5.56 -8.12 1.14 0.37 0.2 0.15 -1.2 -0.79 -0.5 -0.31 -0.19 -1.5 -0.88 0.87
0.53 -0.25 0.33 0.46 0.37 0.69 -0.42 3.04 1.92 1.81 -5.7 -1.25 -1.31 -2.24 -2.63 -3.7 -1.47 -5.22 -5.16 -5.49 -5.69 -0.43 -0.61 -1.43 -0.84 -1.03 -1.17 -0.62 -0.37 -0.8 -0.44 -1.05 -0.64
-0.4 -1.18 -0.57 -1.42 -1.13 -1.86 0.27 1.39 0.07 0.88 -4.19 -0.21 0.02 -1.0 -1.89 -2.93 -0.03 -3.54 -3.84 -4.71 -4.26 0.44 0.66 -0.04 -0.08 0.54 0.42 0.97 1.12 0.76 1.22 0.63 0.92
- - - - - - - 4.16 3.92 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 2.38 - - 4.8 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.25 - - - - - - - - - - - - - - - 3.81 - - - - - - - - -
- - 1.73 - - - - 4.89 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
- - -4.21 -2.3 -1.3 -4.17 - 3.16 2.82 2.13 0.6 -2.81 -6.67 - 0.35 1.34 -2.46 0.71 0.43 -1.18 0.35 - -5.73 - -2.11 -2.47 -2.93 -3.67 -1.9 -1.57 -3.01 -2.7 -4.51
- - - - 1.67 - - 4.16 - 3.58 - - - - - - - - - - - - - - - - - - - - - - -
- - - - -2.6 - - 2.64 - - 0.92 - - - - 1.43 -0.55 1.96 0.68 1.43 0.65 - 1.76 -0.54 1.56 -1.44 - -1.61 - -0.25 -1.38 0.85 -0.26
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
- - 1.46 - 0.02 - - 3.97 2.33 - - - - - - - -2.09 - - - - - - 2.08 - -2.03 0.32 - - - - - 1.35
1.0 0.5 0.88 0.57 0.56 0.32 -1.27 3.47 2.96 1.99 - -3.09 -6.11 -4.76 - - -7.13 - - - - -12.14 -4.94 -6.29 -4.49 -10.53 -7.93 - -7.63 -8.73 - - -5.06
0.48 0.07 -0.39 -0.85 -0.67 -0.01 -0.82 2.69 2.03 1.3 -1.85 0.55 -0.17 0.25 -3.26 -1.82 -0.77 -2.58 -3.68 -4.16 -3.39 1.57 0.3 -1.0 -0.41 -1.09 -0.63 -3.16 -0.36 -1.11 -4.18 -3.78 -0.26
- - - - - - - 4.51 3.35 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.6 3.12 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.04 2.8 3.27 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.52 - 3.33 - - - - - - - - - - - - - - - - - - - - - - -
- - - - 0.08 2.21 - 3.89 1.41 3.31 - - - - - - - - - - - - - - - - - - - - - - -
0.5 0.25 0.63 0.9 0.49 -0.81 1.03 3.18 2.95 2.25 - -2.28 -5.97 -3.34 - - -5.75 - - - - -5.28 -5.91 -6.52 -4.85 -2.83 -2.72 -4.33 -1.71 -3.45 -4.36 -5.17 -2.77
- 1.08 - - - - - 4.14 3.73 - - - - - - - - - - - - - - - - - - - - - - - -
- 0.51 - - - - - 4.4 3.02 - - - - - - - - - - - - - - - - - - - - - - 1.28 -
0.85 -0.12 -0.24 -1.13 -0.69 -1.02 0.41 2.68 1.79 0.41 - -0.08 0.72 -0.56 -3.88 -3.97 -1.6 - -2.33 -1.65 -1.62 0.07 -0.54 2.19 -0.39 -2.3 -2.46 -1.52 0.08 -0.8 -3.0 -0.91 -0.57
- - - - 1.18 3.14 - 4.45 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.7 2.68 - - - - - - - - - - - - - - - - -0.81 - - - - - - -
0.7 0.36 0.23 -0.04 0.67 -0.46 -1.49 2.6 2.14 0.19 - -4.2 -7.9 -3.11 -5.03 - -9.56 - - - - -3.15 -6.96 - - -0.61 -2.58 1.79 0.28 -1.17 2.1 0.89 0.29
- - - - - - - 2.4 1.26 3.23 - 2.65 - - - - - - - - 2.6 1.73 - - - - -1.67 - - - - - -
- - - - - - 2.85 4.69 - - - - - - - - - - - - - - - - - - - - - - - - -
0.25 0.47 -0.37 -0.41 -0.54 -0.23 -0.1 0.66 0.15 0.08 -0.98 -0.26 -0.19 -0.23 -0.82 -0.61 -0.29 -0.11 -0.52 -0.93 -0.7 0.16 0.58 -0.46 0.6 0.21 0.26 0.32 0.04 0.37 0.47 0.41 0.38
0.25 -0.21 0.12 -0.08 -0.56 -0.54 0.47 1.64 1.16 0.41 -0.29 0.16 0.16 -0.32 -1.65 -0.48 0.04 -0.19 -0.48 -0.41 -0.57 -0.54 -0.55 -1.52 0.35 -0.65 -0.61 -0.08 -0.07 -0.18 0.04 0.28 0.3
- 1.59 - - 1.41 - - 4.39 2.66 - - - - - - - - - - - - - - - - - - - - - - - -
-3.5 -3.52 -5.39 -3.1 -3.12 -2.23 -4.43 0.89 1.24 1.63 - -2.7 - -1.64 - - - - - - - - -7.0 -4.13 -6.85 -2.06 -1.28 2.19 2.91 1.22 1.94 2.16 0.13
- - - - - - - 4.68 2.86 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 5.04 - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 3.82 - 4.24 - - - - - - - - - - - - - - - - - - - - - - -
- - -1.41 - -1.5 - - 3.75 - - - - - - - - - - - - - - 2.59 - - - - -0.6 - 2.17 1.33 -0.32 2.09
-0.25 -0.59 -1.26 -1.23 -1.1 -3.02 -1.53 3.76 3.27 2.14 - -1.24 -2.3 -3.14 - -10.35 -4.53 - - - - -3.95 -2.79 -4.72 0.08 -9.61 -6.64 -11.2 -10.29 -10.71 - - -4.71
1.06 0.83 0.04 -0.39 0.23 0.73 0.91 2.86 2.0 1.54 -2.88 -1.08 -2.35 -2.32 -3.4 -5.66 -0.17 -3.49 -2.9 -4.34 -4.05 -0.71 -1.94 -0.48 -1.53 -1.34 -0.85 -1.34 -0.7 -0.55 -0.9 -1.46 -0.61
- - - 1.95 2.21 - - 3.69 3.53 - - - - - - - - - - - - - - - - - - - - - - - -
0.53 0.61 -0.72 -0.77 -0.61 -1.96 -0.77 3.29 2.9 1.92 -3.88 -0.26 -4.79 -0.38 - -5.4 -3.58 -4.39 -3.5 - -2.94 -1.44 -6.17 -1.84 -1.9 0.52 0.42 -6.77 -4.03 -4.02 -5.32 -3.35 -2.17
- - - - - - - 3.82 - 4.24 - - - - - - - - - - - - - - - - - - - - - - -
-0.31 -0.34 -0.78 -1.05 -0.41 0.87 -0.27 1.75 0.87 0.46 -1.22 -0.44 -2.64 -0.48 -2.32 -4.08 -1.35 -2.24 -1.95 -3.33 -2.63 -0.58 -1.64 -5.89 -1.04 0.25 -0.18 1.51 1.13 0.25 1.45 1.31 0.94
-0.61 -0.48 0.02 1.14 1.56 0.92 -5.15 2.58 2.76 2.53 -0.67 -2.12 -3.38 -2.31 -3.53 -1.36 -0.62 -1.3 -3.56 -5.21 -2.59 -3.29 -4.24 - -3.49 -1.53 -1.04 -6.19 -4.06 -1.2 -1.95 -4.64 -2.88
2.39 1.28 -0.82 -1.08 -0.61 - - 3.5 3.13 1.85 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.18 2.8 - - - 2.75 - - - 0.31 - - - - - - - - - - - - - - - -
0.15 0.54 0.14 0.4 -0.1 0.24 -0.82 2.53 1.75 1.96 -1.37 -1.21 -2.25 -1.94 -0.24 -1.79 -1.84 -1.64 -1.79 -1.88 -1.62 -1.91 -1.62 -1.31 -1.96 -0.37 -0.43 -0.08 -0.06 -0.14 -0.38 -0.33 0.29
0.96 0.54 0.39 0.8 1.05 1.17 -1.43 3.33 2.83 1.8 - -2.84 -3.23 -3.9 - - -2.66 - -8.53 - - -4.64 -2.91 -4.34 -2.29 -3.57 -3.08 - -7.41 -6.46 - - -3.42
-0.77 0.37 -1.27 -1.45 -0.74 0.27 -1.32 1.57 1.46 1.73 -2.85 0.56 -5.53 -1.42 -2.54 -2.15 -5.44 -3.66 -4.16 -2.72 -3.45 1.2 -2.24 -1.74 -2.98 -0.31 -2.12 0.8 0.15 -0.06 1.78 2.05 -0.1
- - - - - - - 4.72 2.75 - - - - - - - - - - - - - - - - - - - - - - - -
0.72 0.02 0.03 -1.82 -2.41 -4.13 -0.12 3.85 2.95 1.85 - -2.42 - - -3.99 - -6.22 - - -3.5 - -4.51 -4.12 - -2.96 -4.23 -4.22 -2.88 -1.82 -2.31 -3.12 -1.61 -1.32
- - - - - 2.64 - 3.59 3.36 2.16 - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - 4.67 2.92 - - - - - - - - - - - - - - - - - - - - - - - -
- - - - 0.32 - - 4.99 - - - - - - - - - - - - - - - - - - - - - - - - -
-0.93 -1.66 -0.88 -0.41 -0.21 0.61 0.25 2.25 1.44 1.74 -1.21 -1.21 -0.43 -2.53 -2.27 -3.09 -0.15 -4.4 -2.79 -2.76 -2.6 -0.96 0.07 -1.16 1.47 0.19 0.33 -1.08 0.32 0.59 -1.35 -0.76 0.67
- - - - - - 2.44 3.16 - - - 3.46 1.63 - - - -1.39 - - - - - 0.76 0.63 - - - - -0.14 - - - -
- - - - 1.73 - - 4.83 - - - - - - - - 0.31 - - - - - - - - - - - - - - - -
- - - 2.77 - - - - 4.35 - - - - - - - 2.53 - - - - - - - - - - - - - - - -
- - -0.85 0.09 -0.58 2.06 - 4.25 2.84 - - - - - - - - - - - - - - - - -1.36 - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.