Heatmap: Cluster_151 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.75 0.9 -1.01 -1.73 -1.69 -2.45 -1.64 -3.15 -2.14 -2.77 -0.97 2.83 -1.98 -2.71 -1.82 -2.77 -2.16 -4.04 -4.14 -5.0 -3.9 3.85 -1.67 -2.87 0.74 -1.47 -1.26 -3.04 -2.93 -2.21 -2.26 -2.29 -2.11
-0.49 -0.6 -4.0 -3.66 -5.44 -5.21 -2.79 - - - -0.52 3.16 -4.55 - - - -4.12 - - - - 4.4 - - -3.43 -3.41 -2.97 - - -4.47 -4.34 - -
- - - - - - - - - - - 4.37 - - - - -1.54 - - - -2.13 3.35 - - 0.55 -5.1 -3.77 - - - - - -
- - - - - - -5.53 -9.16 - - -7.9 3.65 -4.86 2.29 - -6.89 -2.76 - - - - 3.42 0.22 -4.83 1.12 -2.67 0.14 - - - - - -
-4.27 -2.79 -4.57 -5.25 -5.79 -3.93 -1.11 -6.96 - -5.08 -0.29 4.08 -2.79 -2.72 -2.58 -1.74 -2.14 - -3.49 -3.14 -3.3 3.28 -3.58 -4.29 0.57 -0.58 -0.63 -4.62 -3.63 -3.31 -5.43 -5.38 -1.99
- - - - - - 0.25 - - - - 3.56 - 2.57 - - -3.18 - - - - 3.61 - - 0.63 - -2.22 - - - - - -
-2.12 -1.79 -3.96 -4.18 -6.71 - 0.22 -6.45 -7.6 - -3.7 4.05 -7.27 1.61 - - -5.05 - -7.21 -5.28 - 3.27 - -3.74 0.23 -2.36 -1.84 -7.19 -6.56 -6.62 -5.65 - -8.17
- -5.76 - - - - - - - - - 3.69 -3.21 -2.13 - - - - - - - 4.0 - - -3.09 0.95 0.68 - - - -3.22 - -
-2.44 -4.66 -4.16 -5.15 -3.3 - -4.39 - -4.56 -3.8 -1.42 3.22 -1.06 - 0.03 - -3.46 - -3.4 - -2.11 4.26 -3.49 - 0.13 -2.43 -1.7 - - - - - -
-0.61 -1.64 -1.1 -1.57 -1.3 -2.41 -1.84 -2.43 -2.46 -3.96 -1.35 3.15 -2.35 -1.99 -3.5 -3.4 -2.71 - -3.76 -5.41 -4.05 3.98 -2.11 -3.98 1.34 -1.77 -1.41 -4.79 -2.96 -4.04 -4.7 -3.08 -3.26
- -5.18 - - - - -5.4 -5.23 - - -0.58 3.08 0.24 - - 0.29 -1.15 - -2.41 -1.38 -2.12 4.2 -2.18 -4.63 0.3 -3.71 -2.41 - - - - - -
- -3.45 -4.18 - - - - - - - -0.22 3.14 - - - -1.73 -5.82 - - - - 4.43 - -2.9 - -0.91 -2.1 - - - -3.51 -2.47 -3.63
-1.38 -0.85 -2.33 -1.87 -2.1 -2.42 -4.2 -2.89 -0.34 -0.96 0.05 2.5 -1.92 - -2.48 0.21 -3.31 -2.73 -0.39 -1.68 -3.21 3.93 -4.93 - 0.67 -1.01 -0.28 -4.01 -0.76 -0.8 -3.8 -3.41 -1.56
-2.67 -0.56 - -4.92 - - -1.54 -2.9 -3.5 -0.84 -1.46 4.08 - 0.5 - -3.39 -6.82 - - - -3.37 3.24 -3.43 -3.56 -0.27 -2.01 -1.32 - -1.53 -2.08 -2.94 - -1.69
- -3.28 -4.19 -2.08 -5.58 - -4.23 - - - 0.89 3.67 -1.71 - -1.71 0.07 -3.98 -3.52 -1.88 -1.63 -1.29 3.78 -3.71 -4.43 0.03 -4.08 -3.38 -4.29 - - - - -3.52
-6.94 -4.52 - - - -4.03 -5.92 - -5.27 -5.29 1.23 2.93 -1.45 - -1.16 -2.49 -2.34 -2.33 1.2 -1.56 -1.6 3.71 -0.4 1.48 -1.07 -2.11 -1.04 -5.3 -2.78 -2.6 -4.84 -5.17 -1.58
- - - - - - -2.01 - -1.88 - -2.92 3.64 - - -1.36 - -4.26 - - - - 4.07 - -1.2 -1.91 -2.57 -2.41 -2.34 - -1.2 -2.54 -4.11 -0.46
- -6.46 - - - - - - -4.75 - -3.81 3.35 -2.83 - - - -7.59 - - - - 4.44 -4.78 - -1.71 -4.04 -3.24 -5.73 -5.68 -4.33 -5.87 -3.97 -2.7
-1.36 0.51 -2.48 -2.54 -4.11 -2.91 -4.81 -3.55 -6.16 -3.6 0.12 3.35 -2.03 - -1.66 - -2.99 - -0.74 -3.85 -1.73 3.6 - -1.55 0.88 -0.95 -0.74 -2.41 -1.84 -2.42 -1.27 -2.54 -0.25
-2.1 -1.99 -5.41 -6.08 -4.17 - -5.35 -3.71 -1.42 - -1.8 3.64 -5.38 - -4.29 - -7.52 - - - - 4.24 - - - -4.21 -4.05 - - -7.01 - - -4.85
-1.03 0.17 -2.26 -3.66 -2.09 -2.29 -3.31 -2.7 -1.23 -2.15 -0.15 3.53 -2.54 -3.05 -3.04 -3.27 -3.49 -5.43 -4.95 -6.6 -4.98 3.8 -2.63 - 0.73 -2.66 -1.47 -4.43 -6.53 -4.75 -7.37 -4.0 -2.86
-5.19 - -4.26 - -2.29 -4.25 -1.27 - - - -0.04 3.68 -2.39 - -1.31 - -2.8 - - - -4.18 3.75 - - -1.27 -2.59 -2.72 -2.52 -0.28 0.14 -3.07 -2.36 0.06
- - - - -6.58 - -4.61 - - - -1.84 3.91 -1.3 -5.88 -0.7 -1.64 -4.5 -3.8 -3.21 -5.97 -3.36 3.83 -3.68 -2.18 -0.24 -2.5 -2.47 -5.32 -6.71 -4.62 -6.27 -5.97 -5.04
-1.66 - - - - - - - - - - 3.72 -0.12 - - - - - - - - 3.6 - - 2.63 -4.25 -2.32 - - - - - -
-0.82 -0.64 -3.24 -4.45 -3.0 - -4.88 -3.7 -2.82 -5.84 -1.56 3.21 - - - - - - - - - 4.41 - - -2.79 -3.95 -3.77 - -6.25 - - - -
0.23 -0.03 -5.51 -5.18 -1.93 -2.57 - - - - - 3.33 -3.15 - - - - - - - - 4.33 - - - -3.74 -4.38 - - - - - -
- - - - - - -4.07 - - - - 4.08 -5.68 - - - -6.04 - - - - 3.6 - -4.85 -0.03 -2.32 -2.47 -2.61 -1.61 -1.75 -1.03 -1.94 -0.09
- - - - -4.07 -1.14 - - -3.34 - -1.13 3.66 - - - - -6.3 - - - - 4.25 - - - -2.98 -2.51 - - - - - -
-2.46 -5.2 -3.11 -7.58 -7.01 -4.96 -4.05 - - - -5.76 4.36 -2.98 -2.99 - - -5.85 - - - - 3.44 - - -0.68 -3.44 -1.98 - - - - - -
- - - - - - -0.58 - - - -0.49 3.53 - - - - - - - - - 4.33 - - - - - - - - - - -
- - - - - - -5.13 - - -4.52 -1.41 3.09 -1.16 - -1.28 - -0.94 - -1.42 - -3.57 4.29 -0.97 -5.34 -0.2 -1.38 -1.28 -3.18 -4.16 -5.15 -4.56 -5.07 -2.86
-0.63 -0.22 - - -5.41 - -1.8 - - - -0.93 3.09 - - - - - - - - - 4.39 - - -1.17 - -3.15 -3.2 -4.32 - - - -1.25
-0.51 -0.39 -2.1 -1.74 -1.9 -1.54 -3.08 -4.57 -3.81 -5.46 -0.32 2.81 0.59 -2.72 -0.51 -0.16 -2.94 -2.56 -3.05 -3.12 -4.01 3.7 -2.09 -0.3 0.79 -0.26 -0.52 -1.64 -3.55 -3.42 -2.04 -1.68 -3.17
-2.31 -0.18 -4.87 -8.91 -6.64 -7.33 -0.64 -6.93 -6.05 -7.55 -0.04 3.7 -2.8 0.06 -1.45 -3.3 -2.55 -2.96 -2.57 -3.04 -3.1 3.47 -2.24 -4.05 1.5 -2.26 -1.41 -6.37 -8.24 -7.16 -6.59 -8.28 -4.91
-1.35 -0.6 -3.77 -4.14 -4.93 -2.73 -3.21 - - -6.34 -0.11 3.06 -0.7 -2.78 -1.85 -5.33 -4.25 - -4.27 -6.34 -5.3 4.25 - -4.49 0.59 -2.67 -2.32 -4.3 - - -5.46 -5.16 -4.21
- - - - - - - -2.03 - - -1.14 3.96 -0.53 - - - -4.49 - - - - 3.63 - - 0.97 -1.69 - -1.43 - -2.31 -1.05 -1.48 -
-2.37 -2.89 -3.71 - -3.9 - -4.13 - - -2.15 0.75 3.66 -1.84 - -0.24 - -4.08 - -0.27 - -3.14 3.54 - -1.33 0.53 -0.61 -0.88 -1.9 -4.2 -2.35 -2.05 -4.22 -1.75
-3.02 -3.15 -4.29 -5.09 -4.09 -3.56 -3.07 -5.12 -4.17 - 0.68 3.27 -1.43 - -2.76 1.24 -3.28 -3.27 -0.47 0.08 -0.5 3.74 -3.47 -3.6 0.6 -2.05 -2.52 - -4.47 - -4.56 - -
-0.57 -2.7 -0.78 -4.87 -3.24 - -1.32 - -2.68 - -1.5 2.67 -2.46 -1.62 0.57 -0.31 -1.13 0.93 0.21 0.15 0.14 3.54 - -2.75 -0.8 -0.73 -0.73 -0.91 -4.1 -2.09 -1.87 -0.77 -1.28
-3.61 -3.79 -2.72 -4.85 -7.68 - -3.97 - - - 1.52 3.29 0.2 - 0.35 -1.63 -1.06 -3.16 -2.18 -6.33 -1.3 3.72 - - 1.32 -3.4 -2.67 -6.56 -6.36 - - -5.4 -
-6.22 -3.37 -7.68 - - - -4.4 - - - 0.01 3.69 -2.23 - -2.06 - -5.76 -3.75 -0.65 -6.24 -2.75 4.01 -3.95 -4.08 -1.02 -2.96 -2.04 -3.79 -6.27 -4.95 -4.27 - -1.85
- - - - - - -2.04 - - - 0.51 3.03 - - - - -4.29 - - - - 4.23 - -1.24 1.91 -5.03 -3.27 - - - - - -
-4.5 -1.79 - -5.16 - -3.01 -0.14 -6.19 -6.35 -3.42 -2.62 3.7 -1.71 -0.0 -2.09 -0.86 -2.91 -1.02 -3.13 -3.19 -1.45 3.17 - -1.9 1.65 0.38 0.19 - -5.22 -2.36 - - -
- - - - - - - - - 1.01 - 3.69 - - - - - - - - - 4.18 - - - - - - - - - - -
- -0.31 -4.51 - -5.19 - -2.78 - - - 0.05 3.48 -1.21 - - - -3.6 - - - -2.81 4.02 - -3.0 0.16 -1.75 -1.73 -5.28 -2.88 -2.51 -1.42 - -1.83
-0.99 -0.96 -1.89 -0.87 -0.86 -0.09 -2.23 -1.13 0.38 -1.37 -0.34 2.75 -2.02 -0.07 0.08 0.07 -1.83 -2.14 -1.32 -0.72 -1.2 2.19 -1.74 0.37 0.71 0.08 -0.2 -0.5 -0.82 -0.25 -0.09 0.15 -0.59
- - - - - - - 0.78 - - - 4.27 - - - - - - - - - 3.56 - - - -2.32 - - - - - - -
-5.22 -2.11 - - - - -3.04 - - - -2.65 3.79 -3.06 - -0.98 - -4.27 - - - - 3.91 - - 0.83 -2.4 -2.27 -3.69 -2.75 -4.13 -1.4 -4.07 -3.52
-2.64 -0.19 -2.29 -3.55 -5.2 - -3.82 - - - 1.69 3.05 -2.84 - - - -5.3 - -2.79 - - 4.24 - - -1.06 -2.46 -2.98 - - - - - -
-2.22 -2.51 -2.27 -2.78 -1.96 -1.16 -3.12 -2.15 -1.03 -2.08 -0.43 2.94 -0.98 0.22 -0.33 0.6 -1.87 -0.68 -1.07 -0.57 -0.77 2.33 -1.61 0.72 0.64 0.16 -0.05 -0.64 -0.89 -0.21 -0.1 0.09 -0.36
- - - - -2.11 - - - - - -0.43 3.56 -1.23 - - - -4.69 -0.07 0.91 - -1.21 3.79 - - 0.8 -4.27 - - - -1.63 - -1.6 -2.09
- -6.19 - - - - -3.12 - -3.8 - -3.76 3.66 0.06 - 1.77 - -4.62 - -2.83 - - 3.49 - -3.05 0.18 0.41 -0.43 -2.37 - - -2.44 -1.69 -2.34
-4.28 -5.53 - - -7.78 - -4.42 - - - -0.81 3.5 -0.1 - -3.94 - -3.41 - - - - 4.1 -4.65 -5.78 1.04 -2.6 -2.55 -3.54 -5.55 -5.33 -6.62 -3.5 -3.74
0.04 -0.64 -1.32 -3.55 -5.12 -3.9 - - -0.37 - - 3.23 - - - - - - - - - 4.35 - - -3.71 -4.16 -4.05 - -4.58 - - - -
-3.01 -3.07 - - - - - -3.32 - - 1.13 3.79 -3.02 - -0.46 - -3.31 - -0.91 - -1.53 3.43 - -2.72 0.74 -1.6 -1.42 -2.27 -2.39 -3.42 -2.18 -2.12 -0.86
-1.13 -1.62 -2.5 -3.84 -3.67 -4.96 -4.05 -6.52 -4.51 -4.53 0.01 3.52 -1.56 -4.55 -2.49 -3.69 -1.2 -6.59 -5.28 -3.7 -2.85 4.01 -5.05 - 0.26 -2.41 -1.53 -7.98 - -7.62 -7.76 - -7.57
- - - - - - - - - - - 3.68 - - - - - - - - - 4.34 - - - - - - - - - - -
-3.66 -4.5 - - - - -4.01 - - - -0.04 3.55 -0.03 -1.37 1.05 - -0.84 - -0.66 -3.05 -3.01 3.22 - -2.2 2.26 -2.16 -3.11 - -3.97 - - - -0.88
-6.44 -7.17 -5.89 - -5.15 - -3.96 - - - -1.78 3.49 -0.6 - -5.36 - -4.57 - - -5.46 - 4.2 -5.49 - 0.45 -2.22 -2.07 - -4.59 -2.62 -4.18 -3.16 -3.58
-0.78 -2.07 -1.8 -3.06 -3.55 - - - -0.77 -0.48 -2.23 3.16 -1.77 - - - -4.89 - - - - 4.24 - - 0.4 -1.26 -2.04 - - - - - -
0.02 0.32 -2.66 -4.08 -4.41 -4.48 -2.27 -3.76 -4.97 - 0.15 3.45 -1.29 -4.89 -1.13 0.92 -3.01 -2.65 -0.67 -2.52 -0.43 3.37 -5.01 - 0.57 -1.51 -0.89 -4.75 -4.47 -3.13 -4.26 -3.87 -1.3
- - -2.42 - - - - - - - - 3.5 -1.38 2.7 - - - - - - - 3.38 - - 1.91 -1.79 -2.63 - - - - - -
-1.65 -0.41 -2.11 -3.78 -3.95 - - - - - - 3.43 -1.07 - - - -3.0 - - - - 3.82 -0.38 - 0.16 1.08 0.66 - -3.6 -3.53 -3.67 - -1.94
-2.91 -3.05 - - -3.57 - -3.89 - -1.93 - -2.06 3.57 -2.18 - -2.83 - -4.21 - - - - 4.21 - -3.08 -0.68 -2.33 -1.69 - - - - - -3.73
-5.2 -0.56 - - - -3.68 -6.18 - -3.95 -3.97 1.75 3.35 -2.3 - -0.8 -2.63 -5.29 - -2.57 -5.22 -2.61 3.93 - -0.29 -2.51 -1.96 -2.67 -2.63 - -6.13 -1.72 -4.1 -4.05
- - - - - - -7.07 -5.88 -3.49 -3.33 -0.97 4.1 0.42 0.12 -0.99 -3.58 -1.91 -2.34 -3.07 -4.47 -3.2 3.0 -2.37 - 1.62 -5.76 -3.82 - - - - - -
-0.2 -0.87 -1.93 - - - -3.68 - - - - 2.97 -2.69 - - - -4.98 - - - - 4.43 -2.74 - -0.45 -2.59 -2.53 - - -3.44 - - -1.5
-3.91 -1.44 -3.15 -1.33 -3.29 - -2.28 -0.51 0.69 -0.07 -0.59 3.95 - 1.16 -5.31 - -7.42 - -2.88 - -2.92 3.03 - -3.56 -0.6 -2.11 -1.83 - -2.5 -2.94 - - -4.43
-1.44 -1.67 - - -6.08 - - - - - 0.04 3.43 - - - - -7.87 - - - - 4.27 - - -0.27 -4.31 -5.93 - -4.95 -4.79 -2.46 -3.67 -
-0.21 -0.84 -2.37 -3.71 -2.78 -5.37 -1.97 - - - -1.81 3.14 -3.92 - -0.41 -4.25 -2.32 - - - - 4.17 -2.48 -1.72 -4.13 -1.85 -2.7 -2.78 -1.67 -1.37 -3.33 -1.71 -1.08
0.58 0.03 -0.93 -2.68 -5.93 -1.33 - - - - -0.87 3.54 - - - - - - - - - 4.07 - - - -3.24 -2.26 - - - - - -3.15
-1.98 -2.01 -4.14 -3.13 -4.79 - -0.75 - -3.76 - -0.37 4.13 - -0.97 - -1.44 -6.59 - -4.7 -1.68 -1.93 3.23 - - -2.18 -0.95 -0.92 -4.28 -3.07 -0.34 -4.57 -5.7 -2.16
- - - -6.07 - - - - - - 0.37 3.38 -1.75 -1.79 0.02 2.13 -4.97 0.7 -0.15 0.12 0.32 3.16 -1.91 -4.62 -0.25 -4.26 -5.36 - - -3.91 - - -2.49
-2.34 -2.92 -4.72 -7.33 -3.42 - -2.19 -6.39 -4.94 -4.97 -0.09 3.6 -2.91 -1.63 -1.95 0.75 -2.44 -1.46 -1.4 -0.53 -2.01 3.29 -2.34 - -0.17 -0.03 0.21 -2.3 -0.77 -1.99 -2.09 -2.41 -1.22
- -3.85 - - -5.32 - - -4.87 -6.75 - -0.79 4.19 -4.1 -2.01 -4.01 1.52 -3.13 -0.62 -3.04 -2.11 - 2.9 -4.14 - -1.39 -0.96 -0.84 - -3.52 -5.01 -4.05 -4.44 -1.2
- - -7.75 - -8.66 - -3.81 - -4.52 - -0.9 3.93 -3.05 -3.63 - - -3.39 - - - - 3.96 -6.34 -4.88 -1.23 -2.68 -1.95 -4.17 -5.75 -3.65 -4.1 - -3.02
-0.89 -3.99 -1.65 -2.61 -4.26 -1.66 - -1.35 0.32 - - 3.35 -2.58 - - - -3.8 - - - - 3.75 - - -0.32 0.62 0.13 -2.26 -2.79 - -2.59 -0.45 0.36
-0.82 -1.29 -3.55 -2.82 -3.92 -1.86 -4.53 - -2.73 -3.5 0.42 2.92 -1.3 -3.48 -2.96 - -2.9 - -0.46 - -2.54 4.17 -3.41 -4.95 0.23 -0.98 -1.0 - -5.82 -4.6 -5.79 -5.35 -2.27
-3.35 -2.87 -4.66 -6.66 -5.74 -5.05 -2.47 -6.68 -6.17 -4.89 -1.13 3.86 -2.95 -2.51 -3.53 -1.62 -2.03 - -4.36 -3.62 -4.83 3.68 -3.3 -5.83 0.57 -0.79 -0.71 -5.31 -3.04 -2.51 -5.0 -5.76 -1.66

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.