Heatmap: Cluster_322 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- -8.86 - - - - - -7.63 - -7.81 -2.7 -0.86 -2.23 -1.87 -1.04 -3.16 -4.92 -1.38 -3.0 -4.87 -2.28 -0.71 - -1.8 -5.15 2.75 2.24 2.05 -1.78 -1.97 1.8 3.27 -2.0
-4.59 -2.5 -6.82 -8.61 -7.53 - -1.52 -8.68 - - -4.9 0.6 -0.72 -0.72 -6.82 - 0.81 - - - -7.89 1.45 1.05 -0.5 0.91 1.5 1.43 1.7 -1.5 -0.78 1.8 2.69 -0.27
-5.31 -3.85 -6.37 -5.53 -7.85 -6.23 0.34 -8.98 - -5.23 -0.15 0.22 -0.39 0.19 -0.44 -0.08 0.63 -0.28 -0.47 -0.94 0.08 1.12 0.39 -2.08 0.06 0.39 0.23 1.38 -0.06 0.04 2.04 2.08 0.1
- - - -9.21 -10.66 - -5.7 -7.68 - -7.52 0.29 -1.39 -2.61 1.23 -0.21 -0.57 -2.27 -0.13 -0.32 -0.05 -0.5 0.84 -4.37 -2.65 -2.43 1.56 1.55 2.76 0.53 -1.37 1.56 1.97 -2.52
- - - - - - - - - -4.1 -2.77 -0.29 -1.31 -0.52 -4.22 -2.09 -1.66 - -2.52 - - 2.06 1.12 1.48 -0.56 1.56 0.89 1.28 -0.1 0.9 1.51 1.75 2.01
- - - - - -2.83 - - -2.86 - -0.34 1.33 - 1.79 -1.34 0.95 -5.31 1.73 0.11 - -0.73 0.53 - -2.92 - 1.89 2.21 2.35 -3.01 -3.66 0.97 0.41 -3.57
- - - - -5.36 - -3.11 - -6.05 - -1.06 0.44 -0.6 -0.83 1.7 -2.73 0.98 -2.98 -3.67 -2.41 -3.71 -1.13 -2.18 -1.31 -0.52 1.25 1.24 2.98 0.1 -1.41 1.85 2.08 -1.9
- -9.1 -8.1 -9.51 -11.48 - -10.1 - -8.04 -9.66 -3.85 -1.01 -1.29 -1.17 -2.84 -4.27 -3.17 -4.76 -5.43 -5.33 -4.46 -0.76 -3.15 -2.18 -0.66 1.63 1.58 2.61 0.99 0.76 2.33 2.95 -0.03
- - - - - - - - - - -3.47 -1.02 -2.03 -1.52 -3.37 - -3.84 - - -5.23 -5.2 -1.64 -3.67 -2.58 -1.21 1.48 1.42 2.69 1.18 0.78 2.45 3.06 -0.19
-4.67 -5.82 -6.44 -5.03 -6.65 -2.68 -4.64 -3.94 -3.56 -3.71 -1.7 -1.68 -1.92 -3.45 -0.32 0.03 -1.74 -1.35 -1.06 -2.28 -1.51 -1.45 -2.79 -2.86 -2.49 1.15 0.92 1.87 0.87 1.6 2.59 2.77 0.75
-2.94 -2.66 -2.9 -2.42 -2.47 -2.62 -0.98 -2.64 -3.31 -3.35 -0.21 -0.26 -1.57 1.5 -3.42 -0.22 -0.47 -1.02 -1.15 -1.66 -1.58 2.17 -0.93 1.77 -1.18 1.98 1.37 0.27 -1.73 -1.51 1.15 1.63 -1.12
-3.06 -2.24 -2.69 -2.91 -3.64 -2.46 -3.05 -2.1 -2.87 -2.74 -0.68 -1.37 -4.61 -0.89 2.12 0.83 -0.86 -0.23 0.54 1.2 0.94 -1.94 -6.66 -6.79 -4.92 1.98 1.44 1.01 -0.56 0.32 1.13 1.46 -0.22
- - - - - - - - - - -1.5 0.6 - 3.41 - - - - - - - 3.11 -0.61 - - 2.27 2.39 -2.6 - -5.61 - -0.01 -
- - - - -11.15 - - - - - -10.94 -5.36 -5.99 -5.17 -8.98 -4.48 -10.36 -6.06 -7.9 -9.07 -6.72 -4.34 -3.01 -3.78 -5.88 1.56 1.2 3.19 -2.35 -3.23 2.96 3.34 -5.85
-1.38 -1.03 -2.53 -3.77 -4.28 -5.26 -0.77 -6.37 -4.92 -6.36 -4.59 -0.51 -0.13 0.38 -2.09 -5.11 -0.88 -7.61 -6.98 -9.36 -5.01 1.67 1.81 1.89 0.42 1.48 1.61 -0.61 0.22 1.18 1.47 0.55 0.56
-3.88 -1.73 -4.43 -4.69 -5.3 -2.87 -3.54 -5.3 - - -4.56 -2.53 -5.58 -1.72 -4.52 -4.61 -1.07 -3.13 -4.55 -4.62 -4.59 -3.7 - -3.45 -2.49 1.95 1.83 2.26 1.13 1.35 2.33 2.81 0.68
- - - - - - -3.26 -0.98 - - - - - - - - -4.02 - - - - - - -2.46 -2.17 2.64 2.75 2.1 - -3.33 2.31 3.21 -1.61
- -5.88 -6.35 - -7.85 - - -4.8 - -6.63 -4.05 -5.54 -6.59 - - - -2.7 - -5.56 - - - - -4.78 - 1.33 1.24 2.62 1.27 1.16 2.17 3.08 2.0
-2.71 -2.73 -2.14 -2.59 -4.07 - -1.12 -3.28 -3.72 -8.9 -7.18 -1.65 -3.38 -2.51 -4.47 - -7.44 - - - - -0.12 -4.6 -5.24 -3.24 1.38 1.37 1.99 0.69 -0.74 3.07 3.28 -1.32
-5.82 -5.25 -6.43 -6.47 -5.86 -5.3 -6.12 -6.9 -7.53 -7.58 -0.37 -1.19 -0.5 -1.27 0.6 -1.07 -2.28 -0.36 -0.29 -1.08 -0.17 -2.0 -1.71 -0.92 -0.03 0.74 1.04 2.31 -1.43 -1.51 2.54 2.99 -3.04
- - - - - - - -2.73 - - - - -3.54 - -2.46 -2.55 -2.16 -2.39 -0.03 -2.55 -1.2 -2.47 - -0.25 -2.42 2.15 1.93 2.2 -1.25 -3.59 1.69 3.64 -2.4
- -3.27 -4.0 - -1.66 - -3.49 - -2.88 -1.43 - 0.9 -2.55 -1.47 -2.46 - - - - - - 1.57 - - - 2.24 1.73 2.63 -0.37 - 2.03 2.77 -1.08
-3.81 -4.29 -2.66 -3.97 -4.46 -4.36 -0.78 -4.21 -5.37 -5.66 -0.63 0.7 0.12 -1.32 0.24 -0.51 -2.69 -0.83 -2.09 -2.51 -2.12 1.09 -0.54 -1.31 0.94 0.41 0.47 2.26 0.54 -0.04 2.04 2.22 0.06
-4.29 - - - - - -4.24 - - - - -1.9 - - - - -2.78 - - - - -4.32 -1.02 -3.47 - 2.3 2.19 2.96 -2.5 -4.18 0.65 3.58 -0.22
- - - - -8.24 - -6.96 -5.21 -7.95 - -3.96 -0.41 -0.96 1.23 - -4.71 -1.7 -2.54 -4.65 - -6.0 2.44 -0.7 2.08 0.7 1.64 1.42 1.1 0.04 0.18 1.02 1.88 0.01
- - - - - - - - - - - -3.66 -5.1 -1.36 - - -6.89 - - - - -2.84 -3.04 -4.75 -3.62 1.74 1.8 3.01 -1.98 -2.16 2.26 3.52 -0.96
- - - - - - - - - - - -3.45 -4.08 - - -2.82 -5.51 - - - - -3.1 -2.86 -3.25 - 2.03 1.8 3.26 -2.69 -3.86 2.72 3.05 -4.53
- - - - - -4.81 - -5.5 - - - - -2.92 - - - -0.22 - - - - - -1.72 -1.09 -2.8 2.46 2.39 2.74 -0.12 -0.55 1.72 2.99 -0.34
-8.92 -9.65 -8.37 -9.64 - - -8.87 - -9.77 -6.66 -0.25 -2.57 -1.45 -3.14 1.36 0.52 -3.45 0.27 0.08 -1.2 -0.35 -1.93 -7.97 -2.95 -4.22 1.83 1.35 1.9 -1.78 -2.46 1.69 3.28 -2.28
- - - - - - - - - - - -3.22 -4.3 - - - -6.71 - - - - - -3.92 -2.47 -1.96 1.74 1.97 3.29 0.8 -0.39 2.53 2.61 -0.13
-8.16 -6.95 -9.5 -9.95 -9.61 -10.58 -10.2 - -10.38 -13.29 -7.35 -4.43 -0.97 -3.91 1.05 -5.28 -3.87 -3.34 -7.35 -8.06 -5.68 -2.91 0.52 -0.99 -4.63 2.05 1.38 2.87 -1.22 -3.86 2.54 2.91 -5.35
- - - - -6.71 - - -4.72 -6.46 -3.82 -6.56 -5.46 - - - -5.54 -2.89 - - - - - - -4.71 - 2.06 2.37 1.96 1.28 1.07 2.23 3.0 1.12
- -12.32 - - - - - - -10.7 - -9.12 - - - - -9.78 -4.08 - - - -8.76 -10.63 - - - 2.86 2.29 1.33 -2.0 -2.52 2.05 3.72 -0.86
-3.54 -3.72 -10.1 -10.23 -10.97 -5.67 - - - -8.96 -7.31 -2.87 -0.6 -3.36 - - -0.32 - -7.56 -7.62 -7.01 -2.36 -2.33 -1.75 -1.02 1.96 1.93 2.63 -0.93 0.28 2.19 3.07 0.37
-2.91 -2.14 -2.66 -1.9 -2.12 -2.5 -1.53 -2.43 -3.25 -2.63 -0.96 -0.87 -2.29 0.69 -4.68 -1.51 -1.11 -1.19 -1.73 -2.12 -1.6 1.52 -1.3 1.62 -1.59 2.28 1.45 1.01 -1.11 -0.99 1.68 2.21 -0.12
- -3.42 - - - -1.07 -2.95 - - - -1.58 1.25 - 0.68 - - -6.26 - - - - 1.88 -3.06 1.65 - 2.04 1.32 1.31 0.2 0.79 1.15 1.76 1.78
- -8.39 - -5.51 -7.6 -3.58 - - -6.74 -5.45 -1.25 -3.2 -4.35 -6.59 1.27 -0.29 -3.23 0.25 -1.6 -0.64 -1.39 -0.95 -3.54 -2.71 -3.97 1.42 1.24 2.9 0.32 -0.39 2.15 2.49 0.03
-1.08 0.36 -1.8 -1.55 -2.06 -2.54 0.15 -2.4 -1.72 -3.13 -1.13 -0.09 -1.42 -0.32 -1.04 -0.77 0.76 -0.61 -1.23 -0.83 -0.62 0.62 -0.36 -2.02 -0.19 0.87 0.74 1.53 -0.26 0.12 2.0 2.03 0.03
- - - - - - - - - - - -1.66 - 3.24 - - -8.19 - - - - 2.57 -1.08 - - 2.1 1.86 -0.1 -6.37 -3.41 0.06 2.7 -1.5
- - -10.28 -6.28 -3.57 -3.04 -7.21 -6.47 - -8.77 -0.44 0.81 0.96 0.49 -0.63 -0.81 0.74 -0.45 -1.86 -1.36 -1.49 2.21 -1.52 1.09 0.97 0.88 1.05 1.52 -1.28 -1.54 1.32 1.54 -1.97
- -2.5 - -5.15 -6.3 - - - - - - - -1.84 - - - -0.63 - - - - -4.8 -2.66 - - 2.15 1.96 2.19 -1.72 - 2.08 3.83 -3.8
-7.16 -5.72 -7.61 -7.87 - - -6.14 - - - -3.73 1.74 - -6.09 - - -6.49 - - - -5.15 1.12 - -0.15 - 2.24 1.67 1.72 -0.29 1.15 1.76 2.17 2.09
- - - - - - - - - - - - - - - - -6.18 - - - - - - - - 1.98 1.33 2.44 -1.68 - 2.51 3.85 -0.6
- - - -6.22 -6.68 - -2.87 -2.08 -2.98 -4.87 -5.54 - -5.49 - - - -2.68 - - - - -5.53 -1.39 -3.69 - 2.69 2.71 1.18 1.78 0.4 1.53 2.92 0.42
- - - - - - - - - - - -5.54 - -6.67 - - -4.49 - - - - -3.82 - -5.16 - 1.69 1.42 3.27 1.49 0.77 2.31 2.71 0.32
-3.48 -4.53 -3.63 -1.47 -3.96 -2.85 -1.82 -4.53 -3.18 -3.34 -5.78 0.27 -2.37 1.18 -3.36 -3.45 -5.94 -4.61 -1.9 -1.97 -1.74 -1.94 -3.48 -5.93 -0.43 1.66 1.68 1.58 1.99 0.7 2.21 2.53 -1.08
- - - - -14.01 -11.91 - -10.44 -6.26 -8.34 0.19 -3.25 -2.8 -2.14 -1.06 -0.58 -2.76 -0.14 0.33 -0.06 0.17 -2.37 -6.4 -3.51 -2.71 1.64 1.38 2.73 1.05 0.31 1.87 2.33 0.03
- - - -5.47 -4.12 -4.84 -7.31 - -7.67 - -2.78 -2.46 -0.26 -1.86 -1.67 -2.26 0.79 -1.05 -6.29 -2.65 -2.32 -1.33 0.75 -0.44 -0.73 1.2 1.33 2.91 -0.66 -1.9 1.58 3.11 -3.75
- - - - -4.0 - - - - - - - - - - - -3.9 - - - - - - - - 1.4 1.36 3.0 - - 2.43 3.84 -
- -5.75 -3.8 -5.61 -3.35 -4.04 -2.39 - - - -5.79 -0.58 -2.91 -1.66 - -3.91 - - - - - 0.84 - - -2.79 2.53 2.33 2.84 -2.27 -2.08 2.36 2.48 -2.08
- - - - - - - - - - - - - - - - -1.79 - - - - -1.81 - - - 2.13 1.96 3.24 -1.95 -1.85 1.61 3.2 0.97
-0.67 -0.12 -5.69 -3.96 - - -1.18 - - - - -1.63 -2.56 -3.89 -3.31 - -3.1 - - - - - -0.9 -1.34 -0.42 1.9 1.88 2.7 -1.41 -2.4 1.32 3.42 -0.44
- - - - - - - - - - 0.07 0.31 0.07 0.09 - -2.58 -5.18 - -3.52 - -3.56 0.49 -3.62 -3.75 1.0 0.65 0.55 2.23 0.77 0.92 2.13 3.0 -0.06
-2.43 -4.2 -3.13 -2.64 -2.55 - -0.58 -3.27 -2.54 -2.29 -2.16 - -1.61 -2.44 -2.44 -2.53 -2.62 - -4.47 -1.36 -4.5 -0.7 -1.75 -0.78 -0.82 2.08 2.08 2.91 -0.39 -1.61 1.64 2.58 0.31
- - - - - - -6.76 - - - -3.75 2.03 -4.33 0.59 -5.12 -4.68 -10.22 - - - - 1.92 0.78 -1.7 -4.01 2.13 2.16 2.86 -2.89 -7.71 0.94 1.62 -4.26
- - - - - - -8.44 - -9.39 - -2.54 1.85 -4.22 0.72 -7.38 -4.15 -8.04 -7.31 - -7.47 - 1.6 0.47 -2.4 -4.02 2.23 2.28 2.98 -2.78 -5.36 1.07 1.6 -5.54
-6.58 - -8.9 -5.55 -5.28 - -1.19 -7.22 -5.79 - -2.64 -0.57 -2.37 -0.45 0.39 -1.9 -1.36 -1.59 -1.57 -1.63 -1.76 0.85 -4.17 -0.69 -1.2 1.81 1.51 2.58 0.39 0.1 1.49 2.37 0.91

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.