Heatmap: Cluster_3 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
-2.67 -2.53 -3.31 -1.97 -2.27 -1.52 -1.52 -0.36 -0.19 0.08 -0.71 0.11 -1.41 -0.3 0.3 -0.56 0.05 -0.78 -0.82 -0.59 -1.05 -0.02 -0.33 -0.83 -0.49 1.24 1.21 0.61 1.64 1.19 0.98 0.83 1.13
-1.38 -1.13 -1.39 -0.83 -1.06 -0.3 0.24 -1.33 -1.37 -0.33 -0.29 0.39 -0.42 -0.11 -0.27 -0.18 0.35 -0.25 -0.19 0.15 -0.1 0.05 0.22 -0.78 -0.09 0.57 0.72 0.34 0.81 0.93 0.45 0.33 1.15
-1.69 -1.3 -1.89 -1.8 -1.42 -1.77 0.21 -1.99 -2.15 -1.09 -0.95 0.6 -0.42 0.27 -0.26 -0.39 0.5 0.36 -0.65 0.08 -0.33 0.23 -0.35 -1.63 -0.87 0.52 0.78 0.65 1.08 1.34 0.92 0.73 1.28
-0.54 -0.45 -0.92 -0.92 -0.89 -1.14 0.37 -0.78 -1.06 -1.08 -0.64 0.36 -0.09 -0.05 0.15 -0.17 0.5 -0.5 -0.32 -0.46 -0.42 0.39 0.41 0.57 0.02 0.56 0.79 0.13 0.75 0.83 0.25 -0.01 0.48
-1.93 -1.82 -2.84 -1.69 -2.21 -2.56 1.26 -3.09 -3.75 -1.83 -1.49 0.08 0.1 -0.39 -0.24 -0.15 0.45 -0.39 -0.5 -1.3 -1.22 0.68 0.17 -0.18 0.37 1.1 1.24 1.05 0.36 0.53 0.95 1.2 0.71
-2.08 -1.96 -1.93 -2.03 -2.08 -2.2 0.2 -1.38 -3.47 -2.06 0.16 0.15 -0.86 0.53 0.76 -0.11 1.0 -0.35 -0.43 0.3 -0.63 -0.6 0.58 -1.99 -0.11 1.1 1.19 0.19 0.54 1.17 0.52 0.55 0.94
- -6.73 -4.89 -5.38 -6.06 -6.34 0.46 -6.09 - -3.12 -0.09 0.4 0.41 1.17 1.21 0.21 0.75 -0.08 0.23 0.06 0.04 -0.19 0.94 -0.41 0.6 0.77 0.7 -0.05 0.35 0.93 0.35 0.04 0.44
-0.4 -0.51 -1.15 -0.62 -0.28 -0.38 0.63 -0.79 -1.22 -0.96 -0.43 0.32 -0.46 -0.27 -0.15 -0.55 0.4 -0.31 -0.93 -0.56 -0.26 0.23 0.21 -0.97 -0.26 0.51 0.7 0.41 0.89 0.99 0.64 0.43 0.74
-1.52 -1.75 -1.35 -0.89 -0.7 -0.11 0.47 -1.44 -1.22 -1.2 -0.32 0.26 -0.59 0.2 -0.33 0.09 0.44 -0.14 0.11 0.13 -0.04 0.12 0.12 -0.48 -0.47 0.36 0.54 0.46 0.9 0.99 0.37 0.33 1.05
-5.23 -6.46 -6.42 -6.94 -6.56 -7.48 -0.32 -6.52 -6.75 -5.97 -0.05 0.24 0.72 -0.05 -0.61 -0.87 0.83 -0.92 -0.88 -0.4 -0.96 0.49 0.42 1.78 0.1 0.99 1.04 0.6 0.92 1.13 0.64 0.65 0.98
-7.2 -6.7 -7.81 -8.58 -7.48 - -0.61 -5.77 -5.48 -4.91 0.23 0.34 -0.22 0.2 0.23 1.0 0.54 0.36 -0.17 0.21 0.0 0.39 -0.17 -0.94 0.63 1.42 1.22 0.5 0.33 1.12 0.53 0.61 0.8
-1.43 -1.43 -1.2 -0.6 -0.64 0.25 0.25 -1.46 -0.91 -0.4 -1.09 0.58 -0.89 -0.1 0.74 -0.54 0.24 -0.62 -0.06 -0.43 -0.1 0.1 -0.04 -1.29 0.43 0.48 0.58 0.76 0.68 0.52 0.87 0.37 0.75
-0.56 -0.38 -1.09 -1.02 -0.63 -0.27 0.16 -0.85 -0.84 -0.38 -0.55 0.37 -0.18 0.24 -0.29 -0.43 0.22 -0.69 -0.78 -0.69 -0.53 0.0 0.39 -0.27 -0.77 0.79 0.61 0.58 1.04 0.89 0.74 0.37 0.57
-0.1 -0.47 -0.86 -1.01 -0.58 -0.14 0.36 -0.67 -0.52 -1.03 -0.95 0.17 -0.27 0.24 -0.27 -0.88 0.34 -0.66 -0.95 -0.68 -0.63 0.47 0.57 -0.1 -0.01 0.34 0.49 0.44 0.89 0.86 0.54 0.37 0.75
-0.25 -0.09 -0.63 -0.71 -0.81 -0.16 0.03 -0.61 -0.66 -0.35 -0.59 0.09 0.14 -0.11 -0.33 -0.34 0.27 -0.57 -0.5 -0.66 -0.72 0.4 0.19 0.16 -0.24 0.41 0.47 0.45 0.69 0.76 0.52 0.54 0.61
-0.88 -0.96 -1.03 -0.57 -1.29 -0.85 0.03 -1.53 -1.63 -0.66 -0.98 0.51 -1.26 -0.23 -0.56 -0.42 0.65 -0.36 -1.08 -0.48 -0.5 0.19 -0.21 -1.35 -0.47 1.34 1.62 0.57 0.79 0.85 0.44 0.15 1.26
-0.9 -0.69 -0.86 -0.37 -0.76 -0.03 0.22 -1.44 -1.45 -1.01 -0.64 0.06 -1.0 0.03 -0.23 -0.76 0.85 -0.37 -0.78 -0.3 -0.57 0.19 -0.1 -0.86 -0.58 0.52 0.7 0.75 0.87 1.01 0.51 0.7 1.22
-1.41 -2.06 -1.29 -0.72 -0.7 -0.15 -0.02 -1.59 -1.64 -1.0 -0.51 0.02 -0.58 -0.19 0.05 -0.48 0.69 -0.46 -0.63 -0.37 -0.55 -0.29 -0.74 -0.49 -0.51 0.79 1.12 1.0 0.66 0.82 1.02 0.94 1.16
-1.35 -1.11 -3.71 -5.27 -4.55 -4.67 1.51 -4.18 -4.0 -3.83 -0.31 0.75 0.06 0.65 -1.92 -0.25 0.83 -1.43 -0.76 -0.69 -0.45 1.28 0.72 0.2 -0.66 0.93 1.15 -0.22 0.65 0.89 0.29 0.22 0.98
-0.66 -0.51 -0.85 -0.54 -1.01 -0.79 -0.32 -1.27 -1.07 -0.71 -0.22 -0.26 -0.66 -0.34 0.22 -0.31 0.34 -0.07 -0.8 0.23 -0.33 0.13 -0.25 -0.38 0.23 0.83 0.83 0.55 0.73 0.94 0.57 0.33 0.99
-2.45 -1.87 -2.2 -2.94 -2.44 -2.18 0.7 -3.74 -2.32 -4.06 -0.86 0.29 -0.61 -0.01 0.44 -0.29 -0.06 -1.03 -0.14 -0.4 -0.3 -0.0 0.03 -0.0 -0.46 1.21 1.12 0.76 1.15 1.03 0.86 0.63 1.46
-1.55 -1.33 -1.32 -1.03 -1.2 -0.34 0.46 -1.3 -1.04 -0.84 -0.36 0.54 -1.27 0.61 0.39 -0.45 0.45 0.12 -0.11 0.19 -0.0 -0.02 0.46 -1.44 -0.64 0.48 0.63 0.47 0.74 0.82 0.56 0.41 0.73
-0.42 -0.64 -1.17 -0.88 -1.0 -0.63 -0.6 -0.68 -1.08 -0.8 -0.16 0.16 -0.82 -0.46 -1.25 -0.83 0.29 -0.45 0.1 -0.79 -0.08 0.13 0.21 -1.61 -0.42 0.96 0.99 0.79 1.09 1.08 0.81 0.38 1.02
-1.03 -0.93 -1.69 -1.82 -1.64 -0.82 0.36 -1.93 -1.59 -1.01 -0.22 0.47 -0.36 0.9 0.23 0.14 0.4 0.35 -0.12 0.02 0.06 0.18 0.12 -0.47 -0.3 0.22 0.47 0.29 0.85 0.95 0.54 0.07 0.71
-0.68 -0.7 -1.93 -2.36 -2.73 -1.67 0.2 -2.28 -2.59 -1.33 -1.3 -0.06 -1.24 0.55 -0.55 -0.75 0.52 -0.6 -1.23 -1.35 -0.66 -0.73 0.36 -1.55 -0.25 0.86 1.07 0.67 1.52 1.6 1.31 0.9 1.02
-6.09 -6.94 -6.55 - - - -1.97 -3.01 - -4.45 -0.77 -1.32 -1.56 -1.56 -0.93 -2.1 1.54 -0.62 -1.59 -1.11 -1.91 -0.98 -0.44 -1.57 -0.89 1.96 2.0 1.16 1.41 1.56 1.2 1.05 1.7
-1.17 -1.11 -1.45 -1.2 -0.88 -0.2 0.48 -1.39 -1.17 -1.01 -0.47 0.81 -0.29 0.37 -0.52 -0.73 0.46 -0.84 -0.96 -0.58 -0.93 0.34 0.4 -0.02 0.01 0.83 0.96 0.58 0.86 0.77 0.57 0.65 0.36
-4.18 -4.67 -4.7 -5.45 -4.79 - -0.45 -6.51 -7.07 -4.09 -0.09 0.85 0.5 -1.66 -0.66 -1.66 1.34 -0.78 -2.11 -1.51 -1.73 1.04 0.75 -1.67 0.62 1.42 1.6 0.32 0.82 1.71 0.34 0.61 1.12
-0.66 -0.31 -2.17 -2.34 -1.76 -1.7 -0.45 -1.96 -1.44 -1.57 -0.09 0.33 -0.18 -0.19 -0.06 -0.89 0.51 -0.75 -0.81 -0.94 -0.9 -0.15 0.63 -0.66 0.09 0.93 1.12 0.8 1.08 1.19 1.09 1.03 0.27
-1.48 -0.89 -1.97 -1.69 -2.15 -1.83 -0.49 -1.49 -1.57 -0.55 -0.42 0.14 -0.52 0.25 -0.81 -1.56 0.5 -0.46 -0.59 -0.65 -0.31 -0.03 -0.13 -1.02 -0.57 1.02 1.08 1.12 0.8 1.18 1.24 1.1 1.11
-0.49 -0.29 -1.27 -1.36 -1.62 -0.99 -0.39 -1.36 -1.37 -1.1 -0.98 0.25 -0.11 0.24 -1.36 -1.5 0.59 -1.29 -1.63 -1.61 -1.53 0.87 1.09 -0.09 0.22 0.9 1.01 0.84 0.57 0.83 0.65 0.86 0.99
-1.22 -1.31 -1.87 -1.82 -1.7 -1.12 0.07 -1.59 -1.72 -0.6 -0.68 1.28 -0.84 0.46 -0.48 -1.45 0.65 -1.25 -1.41 -1.14 -1.44 0.85 -0.0 -1.55 -0.02 1.26 1.37 0.13 0.53 1.04 0.77 0.4 1.34
-0.51 -0.57 -1.48 -1.81 -2.51 -3.56 0.47 -2.45 -1.67 -1.77 -0.79 0.53 -1.53 -0.4 -0.83 -0.23 0.69 -1.59 -1.14 -2.12 -1.33 -0.33 0.14 -1.15 -1.08 0.96 0.99 0.81 1.7 1.32 0.55 -0.0 2.09
-0.82 -1.2 -1.37 -1.08 -1.38 -0.23 -0.61 -1.19 -1.5 0.19 -0.24 -0.11 -1.33 -0.3 -0.17 -0.33 0.55 -0.15 -0.52 -0.8 -0.54 -0.28 -0.82 -1.42 0.02 1.01 1.09 0.72 0.87 1.1 0.78 0.9 1.15
-0.63 -0.37 -1.17 -1.22 -0.87 -0.26 0.09 -1.02 -0.6 -0.71 -0.44 0.03 -0.34 0.44 -0.09 -0.27 0.3 0.08 -0.39 -0.69 -0.52 0.35 0.14 -0.56 0.16 0.61 0.78 0.06 0.67 1.06 0.34 0.08 1.0
- - - - - - -3.54 - - - - -5.49 -6.54 - - - 0.87 - - - - -5.2 - -7.32 -1.54 1.54 1.4 2.53 2.06 1.17 2.06 2.4 1.81
-0.22 -0.09 -0.86 -0.93 -0.82 -0.44 0.1 -0.31 -0.61 0.02 -0.24 0.43 -0.51 0.08 -1.71 -0.84 0.42 -0.58 -0.65 -0.72 -0.44 0.3 0.29 -0.89 0.01 0.68 0.82 0.23 0.8 0.8 0.04 -0.1 1.32
-2.05 -1.86 -1.21 -1.41 -0.73 -0.46 0.6 -0.89 -1.29 -0.62 -0.65 0.04 -0.34 0.13 -0.68 -1.23 0.49 -1.26 -0.88 -1.13 -0.93 0.12 -0.22 -1.07 -0.41 0.9 1.1 0.32 1.13 1.55 0.62 0.8 1.28
-2.65 -2.68 -3.01 -2.8 -3.02 -2.51 -0.65 -3.11 -2.37 -2.16 -0.15 -0.23 -0.66 -0.08 -0.9 -1.2 1.0 -0.86 -0.99 -0.96 -1.11 -0.25 -0.21 0.18 -0.23 1.32 1.37 1.1 1.31 1.42 0.92 1.04 1.38
-0.75 -0.74 -0.82 -1.17 -0.82 -0.33 0.37 -0.27 -0.94 -0.33 -0.44 0.15 -0.36 0.18 -0.05 -0.18 -0.05 0.29 -0.57 -0.36 -0.17 0.18 0.37 -0.61 -0.28 0.39 0.51 0.51 0.86 0.84 0.42 0.16 0.79
-1.06 -1.21 -1.03 -1.2 -0.89 -1.16 0.07 -1.33 -1.57 -1.08 -0.46 -0.32 -0.64 0.35 0.21 -0.3 0.12 0.14 -0.46 -0.26 0.18 -0.2 0.04 -0.74 -0.39 0.38 0.49 0.89 1.24 1.08 0.68 0.68 1.08
-8.84 -5.08 -6.49 -3.07 -2.73 -1.13 -6.13 -0.71 -0.05 -0.97 -6.48 -5.11 -1.79 - - -6.19 -0.27 - - -6.2 -6.16 -4.24 0.92 2.14 -3.42 1.62 1.7 1.53 1.24 1.24 1.82 1.69 0.87
-3.94 -1.75 -7.43 -4.63 -5.03 -3.37 -0.63 -2.39 -2.11 -1.55 -0.87 0.2 -1.99 0.11 -0.94 -1.58 0.6 -0.35 -1.57 -1.67 -2.04 0.06 -0.42 -1.83 -0.56 1.69 1.46 1.23 1.12 1.67 1.34 1.32 1.35
-2.02 -0.97 -3.85 -3.68 -3.29 -1.18 -0.61 0.21 -0.44 -0.52 -0.19 0.24 -1.07 -0.28 0.08 -0.06 0.29 0.32 -1.01 -0.7 -0.82 0.14 -0.68 -1.72 0.22 1.32 1.14 0.63 0.78 1.23 0.72 0.85 0.88
-0.77 -0.53 -1.2 -0.98 -0.99 -0.1 0.08 -0.96 -1.11 -0.65 -1.74 0.72 0.52 0.03 -0.01 -3.01 0.92 -3.48 -3.52 -3.19 -3.36 0.79 0.72 -0.3 0.45 0.37 0.77 0.61 1.22 0.92 0.76 0.43 0.6
-2.49 -3.05 -2.29 -2.54 -2.79 -1.78 0.24 -3.87 -3.98 -2.64 -0.73 0.29 -0.45 -0.31 0.54 0.07 0.7 -0.9 -0.59 -0.15 -0.08 -0.19 -0.37 0.05 -0.1 0.78 1.07 1.09 0.68 0.94 1.2 1.06 1.27
-0.39 -0.39 -1.16 -0.99 -1.14 -0.4 0.01 -0.8 -0.44 0.05 -0.11 0.22 -0.34 0.18 -0.89 -0.66 0.55 -0.23 -0.24 -0.61 -0.3 0.08 -0.35 -0.24 -0.38 0.45 0.68 0.59 0.67 0.81 0.6 0.48 0.95
-2.11 -1.46 -2.83 -1.93 -2.23 -1.57 -0.08 -2.04 -2.82 -1.22 0.34 0.09 -0.99 -0.65 0.34 -0.44 0.74 0.2 0.29 -0.12 0.47 -0.86 0.13 -2.56 -0.41 1.14 1.4 0.2 0.79 1.48 0.46 0.56 0.96
-6.23 - -6.68 - -3.51 -3.06 -0.39 -2.16 -3.05 - 0.47 0.38 -1.79 -1.57 -0.23 -0.25 0.6 0.37 0.72 0.79 0.28 -0.71 0.33 -2.6 -0.13 1.43 1.63 0.11 0.79 1.52 0.65 0.45 0.96
- -5.51 - -7.38 -8.03 - -0.81 - - -3.94 0.33 -0.13 -1.74 -1.61 -0.7 0.34 0.67 -0.69 -0.53 -0.55 -0.01 0.03 0.02 -1.5 -0.12 1.53 1.36 1.08 1.06 1.65 1.12 1.29 1.24
-4.41 -3.9 -4.98 -4.15 -4.63 -4.27 -0.58 -4.68 -5.12 -3.89 -0.14 -0.4 -0.66 -0.64 1.36 -0.16 0.19 -1.03 -0.9 -0.93 -0.7 -0.37 0.25 -1.12 -0.52 1.39 1.28 1.28 1.1 1.15 1.42 1.58 0.66
-1.01 -1.04 -1.39 -1.08 -1.32 -0.84 -0.64 -1.86 -1.56 -1.16 -0.56 -0.22 -0.52 0.66 -0.59 -0.8 0.32 0.02 -0.57 -0.6 -0.38 -0.11 -0.36 -0.52 0.26 0.34 0.49 1.03 1.03 1.3 1.13 0.97 1.07
-5.97 -6.81 -6.18 -6.52 -5.98 - -0.28 -8.97 -7.06 - -0.22 0.17 -0.45 0.15 -0.59 -1.44 0.88 -0.91 -0.97 -0.53 -0.64 0.02 0.43 0.61 0.13 1.26 1.23 0.98 1.24 1.34 0.94 0.84 1.45
-4.55 -3.71 -9.17 -6.03 -7.97 -5.34 -0.66 -3.61 -4.1 -3.34 -0.61 0.21 -1.25 0.55 -0.19 -0.52 0.38 -0.51 -1.36 -0.9 -1.67 0.31 -0.52 -1.49 0.11 1.32 1.12 1.19 1.06 1.76 1.29 1.37 1.39
-1.4 -2.41 -2.13 -2.75 -1.99 -0.85 1.1 -1.65 -2.51 -3.72 -1.76 0.74 -0.71 0.18 0.14 -1.22 0.87 -2.59 -1.61 -1.43 -0.92 0.6 -0.12 1.41 -0.84 0.57 0.76 0.66 1.13 0.94 0.71 0.76 1.15
-3.16 -3.63 -5.32 -4.75 -7.89 -4.15 0.08 -4.65 -6.99 - -0.28 0.82 0.25 0.06 -0.72 -0.24 1.14 -1.6 -0.86 -0.92 -1.84 0.69 0.71 -1.59 1.1 1.47 1.93 0.0 0.56 1.25 0.11 0.36 0.92
-3.65 -3.41 -6.1 -4.94 -3.22 - -1.22 -4.39 -5.98 -1.98 -0.67 -0.41 -2.33 0.01 -0.67 -0.96 0.82 -0.8 -0.44 -1.09 -2.64 -0.87 -0.7 -2.83 -0.63 2.03 1.76 1.16 1.01 1.72 1.47 1.31 1.18
-0.63 -1.05 -1.24 -1.66 -1.43 -1.06 -0.09 -1.82 -1.52 -1.37 -0.27 0.28 -1.22 0.18 -1.02 -0.83 0.41 -0.02 -0.38 -0.28 -0.21 -0.51 0.02 -1.98 -0.31 0.38 0.6 0.86 1.38 1.42 1.09 0.75 1.27
-3.08 - - -4.57 -6.62 - 0.3 -5.22 - - -2.84 -0.33 -0.73 - - -0.41 0.62 1.31 -1.31 -0.42 -2.43 -1.64 -1.17 -1.16 -1.42 0.92 0.91 1.95 1.81 1.39 1.44 1.81 1.24
- - - - - - -6.55 - - - -0.4 -1.1 -3.11 -1.79 -0.81 -0.82 0.7 -0.27 0.07 0.59 0.11 -6.43 -1.61 -3.42 -2.87 1.59 1.54 2.14 0.59 0.29 1.96 2.35 0.6
- -6.0 - -6.99 - - -0.85 - - - -0.97 -0.25 -1.51 -2.39 -1.88 -2.7 1.38 -1.54 -4.23 -1.49 -1.8 -0.61 -0.93 -0.45 -1.58 1.76 1.73 1.58 1.58 1.76 1.2 1.22 1.81
0.06 -0.14 -0.97 -1.68 -1.75 -1.53 0.56 -0.76 -1.22 -1.38 -0.06 0.7 -0.59 0.13 0.25 -0.78 0.31 -0.28 -0.41 -0.65 -0.37 0.12 -0.54 -1.9 0.51 0.85 1.09 0.56 0.14 0.42 0.93 0.68 0.64
-7.27 -4.73 -7.01 - - - -4.66 - - - -2.78 -3.2 -0.07 -2.61 -3.6 -4.69 0.44 - -4.64 -4.29 - 0.07 0.18 -1.92 0.42 1.75 1.77 1.81 1.38 1.25 2.04 2.47 0.37
-1.27 -1.66 -1.35 -1.4 -1.16 -1.36 0.99 -1.92 -2.17 -1.88 -2.12 0.16 -1.07 -0.03 -0.66 -1.7 1.1 -1.54 -1.57 -1.36 -1.44 0.38 -0.51 0.95 -1.32 0.89 1.09 0.89 1.28 1.1 0.83 0.73 1.27

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.