Heatmap: Cluster_211 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - - -3.87 - - - - - - - - - - - - - - - - 3.99 4.09 - - - - - -
- - - - - - - -6.58 -7.1 - -4.69 -3.7 -2.49 -1.52 -4.69 -6.78 -1.9 -5.03 - -5.2 -4.76 -5.37 -2.12 -2.42 -1.07 4.14 3.74 - - - -7.56 -7.51 -6.01
- - - - - - - -5.61 - - - - - - - - -9.41 - - - - - -4.34 - - 4.12 3.93 -4.02 -4.87 -5.3 - - -2.59
- - - - - - - -1.25 - - - - -3.48 - - - -1.84 - - - - - - -1.06 - 4.29 3.6 - - - - - -
- - - -7.34 - - - -6.49 - - - - -6.69 - - - -9.98 - - - - - - -6.89 - 4.16 3.91 -5.73 -7.76 -7.76 -6.03 -6.61 -
- - - - - - - - - -1.33 - - - - - - - - - - - - - - - 4.01 4.04 - - - - - -
-5.74 -4.48 -4.68 -3.65 -4.24 - -0.75 - -5.9 - -4.14 1.45 -1.87 -2.95 -1.01 - -6.09 - - - - 2.05 -5.6 -0.8 -2.74 3.58 3.46 -4.05 -5.91 - -4.02 -1.62 -3.47
- - - - - -7.24 - - - - - - - - - - - - - - - -5.4 - -0.03 - 4.0 3.88 -2.96 -1.67 -2.42 -2.58 -1.43 -
- -0.89 - -2.6 -6.79 -3.7 - -3.68 - - - - - - - - - - - - - - - - - 4.04 3.97 - - - - - -
- - - - - -4.12 - - - - - - - - - - - - - - - - - - - 4.02 4.06 - - - - - -
- -6.22 - - -6.36 - - - -7.77 - - - -5.12 -5.18 - - - - - - - - - - -5.14 4.16 3.9 - -7.6 - -7.85 -6.8 -
-9.49 -10.53 -11.53 - - - -8.24 - - -11.1 0.43 -5.31 -1.3 -5.14 -0.65 -0.47 0.13 0.58 0.62 0.62 0.75 -5.03 -4.1 -4.04 -1.48 3.5 3.26 -2.91 -3.17 -2.12 -3.59 -3.11 -1.21
- -4.3 -7.11 -6.8 -5.44 -6.17 -5.69 - - - -0.92 -0.78 -1.62 -2.66 -2.62 -0.99 -2.21 -0.41 -1.0 -0.97 -1.47 -2.91 -5.1 -0.94 -2.66 3.64 3.66 0.49 -1.71 -2.87 -1.87 -2.15 -4.7
-8.71 - -3.06 -2.53 -2.1 -3.29 -4.21 - -9.04 - -1.39 -0.71 -1.76 -2.64 -2.93 -1.3 -1.42 -1.43 -1.99 -1.73 -2.75 -2.42 -3.06 -0.27 -2.65 3.53 3.55 1.28 -0.78 -1.47 -1.06 -1.36 -3.56
- - - - -7.83 - - -6.47 -4.62 -3.62 -3.7 -3.3 -1.0 - -3.29 1.59 -2.7 -1.15 -1.12 -1.71 -0.47 -3.55 - -3.87 -0.54 3.69 3.71 -6.94 -3.66 -4.62 -5.84 - -
- - - - -4.68 - -3.98 -3.87 -2.78 -4.58 -3.06 -0.16 -2.45 -0.96 -0.37 -2.05 -1.5 -2.88 -1.99 -3.05 -2.02 -0.67 -3.08 -2.21 -1.34 3.7 3.56 -1.82 -1.39 -0.97 -1.03 -1.17 -0.74
-1.28 -0.76 -1.28 -0.25 -0.69 -1.28 -0.62 -0.67 0.25 0.34 -0.97 0.43 -2.24 -0.9 0.44 -0.9 -2.71 -0.85 -0.98 -0.63 -1.19 -0.48 -1.6 -1.58 -0.91 3.0 2.65 -0.57 -0.96 -1.51 -1.09 -1.07 -0.98
- -9.69 - - -9.33 - -8.04 - - - 0.28 -3.71 0.09 -4.44 1.04 -2.02 -0.07 -0.97 -0.86 -1.36 -0.8 -2.61 -5.56 -6.28 1.44 3.37 3.34 0.33 -2.83 -2.31 -2.76 -4.38 -2.27
-4.87 -5.88 -4.25 -1.83 -2.84 -2.62 -3.93 -0.83 -0.37 -0.74 -4.68 0.26 -4.64 0.74 - - -2.1 - - - -5.96 -1.09 -4.44 -2.98 -3.06 3.84 3.45 -3.8 -2.41 -2.61 -3.16 -3.7 -1.18
- - - - - - - - - - - - - - - - - - - - - - - -3.63 - 4.07 4.01 - - - - - -
- -2.86 - - - - - - - - - - -4.88 - - - -3.76 - - - - -2.53 - - - 4.03 4.01 -3.77 -6.53 -4.94 - -4.47 -
- - - - - - - - - - - - -3.41 - - -2.42 -0.88 -2.25 - - - -2.26 - - -2.29 3.93 3.77 -2.41 - - -1.68 1.13 -
- - - - - - - - - -4.86 - - - - - - - - - - - - - -4.68 - 4.07 4.01 -5.75 - - - - -
-1.64 -1.35 -1.87 -2.38 -2.38 -2.53 -0.55 -1.51 -2.89 -1.45 -0.87 -0.41 0.03 -0.77 0.6 0.07 -0.35 -0.5 -1.28 -0.8 -1.22 -0.84 0.04 -0.41 0.49 2.61 2.48 -0.72 -0.06 0.64 -0.27 0.23 -0.05
- - - - - - -4.76 - - - -3.07 -1.26 -3.81 -3.06 - -5.15 -5.36 - -5.09 -3.15 - 1.16 -1.72 -1.85 -2.56 3.8 3.63 0.72 -1.99 -2.66 -1.53 -2.07 -4.64
- - -5.14 - - - - - - - - - - - - - - - - - - - - - - 4.23 3.82 - - - - - -
-5.41 -5.29 -7.85 -8.07 - - -6.34 -7.06 -6.21 - - - -5.78 - - - - - - - - - - - - 4.01 4.06 - - - - - -
-6.06 -4.92 - -8.21 -8.72 - -4.75 - - - - - -6.9 - - - -7.72 - - - - - - - - 4.13 3.95 - - -6.8 - - -
- - - - - - - - - - - -4.1 - -0.09 - - - - - - - 0.23 - 1.01 - 3.77 3.93 - - - - - -
- -7.64 - - -10.48 - -6.77 -8.89 -9.44 - -2.67 0.79 1.62 1.5 -2.34 -1.86 -0.44 -3.01 -3.21 -2.52 -2.64 0.13 0.02 1.07 1.08 3.29 2.85 -6.56 -8.06 - -5.92 -5.56 -4.13
- - - - - - - -6.36 - - - - - -4.45 - - - - - - - -5.54 - -4.7 - 4.23 3.65 -0.69 -3.76 - -0.46 -2.82 -
- - - - - - - - - - - - - - - - - - - - - - - - - 3.92 3.88 -0.89 - - -1.17 1.11 -4.53
- - - - -7.55 - - - - - - -2.66 - - - - - - - - - -2.33 - - - 3.97 3.91 0.09 -4.07 - -2.22 -0.66 -
-8.36 - - - -7.42 - - -6.5 -7.25 - -3.68 -4.48 -2.67 -7.28 -5.7 - -0.64 -4.62 -4.14 -4.06 -5.76 -5.32 -0.76 2.97 -3.44 3.52 3.52 -4.77 -5.18 -8.41 -3.07 -2.39 -8.19
- -8.04 - - - - - - - - - - -4.16 - - - -7.37 - - - - -7.18 - - - 4.03 4.05 - - - - - -
- - - - - - - - - - - - - - - - -7.75 - - - - -6.25 - - - 4.11 3.97 - - - - - -
-3.98 -2.6 -4.96 -3.46 -2.81 -2.48 -0.86 -1.21 -0.18 -1.17 - 2.05 -2.02 0.65 - - -1.44 - - -5.85 - 0.22 -2.71 - -1.81 3.47 3.18 -4.75 -1.22 -1.79 -3.16 -2.59 -0.23
- - - -6.2 - - - - - - - -0.84 - - - - - - - - - -1.16 - - -3.38 4.05 3.93 - - - -4.64 - -
- - - - - - - - - - - - - - -0.73 - -3.36 -2.24 - - - -1.33 - -2.57 - 3.93 4.03 - - - - - -
- - - - - -5.86 - -3.22 - - -3.43 - -3.01 - - -3.23 -4.5 -1.01 -3.76 -3.24 -2.99 - - -5.98 -1.99 3.96 3.99 - - - - - -
- - - - -6.33 - - - -4.01 -3.86 -0.33 -4.01 -2.71 - 0.99 1.01 -2.5 -0.4 -0.11 -1.18 -0.54 -4.5 -2.64 -3.12 -1.44 2.87 2.9 1.25 -0.09 -0.01 0.39 1.77 -1.52
- - - -3.16 - - - - - - - - - - - - -7.05 - - - - - - - - 3.77 3.51 -0.5 0.77 0.75 0.15 0.28 0.55
- - - - - - - - - - -2.91 -2.66 - -1.07 - - -5.26 - - - - -0.52 - 3.2 -3.36 3.54 3.3 - -3.19 -1.83 - -6.14 -1.84
-6.25 -6.25 -9.0 -6.74 - - -7.14 - - - -2.8 -0.77 -1.14 0.07 0.2 -1.1 -0.43 -1.67 -3.07 -3.1 -3.25 2.35 0.6 -1.35 -0.88 3.38 3.21 -3.71 -3.47 -4.17 -2.68 -2.82 -7.1
-5.21 -0.31 - - -5.31 - -2.38 - - -2.67 -3.11 - - - - - -6.49 - - - - -4.08 -1.18 -1.59 - 3.82 3.7 0.23 -0.78 -1.53 -0.88 -0.42 -1.78
- - - - - - - - - - - - - - - - - - - - - - - - - 4.18 3.9 - - - - - -
-2.05 -3.67 -5.47 -3.5 -3.02 -1.9 -5.07 -2.43 -2.98 - - - - - - - -5.78 - - -5.12 - -6.13 - -3.28 - 3.93 3.99 -3.86 - -3.09 -2.95 -3.04 -3.39
- - - - - -4.49 - -5.77 -5.93 - - - - - - - -7.76 - - - - - - - - 4.0 4.08 - - - - - -7.89
-4.76 -5.48 - -4.0 -5.13 - -1.57 -4.54 - - - -3.69 - -1.1 -1.36 0.13 -7.85 -3.61 -0.39 -1.19 -0.29 -3.04 - -2.35 - 3.89 3.67 -1.67 - -4.64 - -3.61 -4.67
- - - - - - - - - - - - - - - - - - - - - - - - - 4.15 3.93 - - - - - -
- - - - - - - - - - - -3.0 - -1.34 - -1.98 -3.27 - - - - -0.48 -4.33 -1.35 - 3.93 3.74 -3.66 -0.7 -1.23 -0.31 -1.39 -3.97
- - - - - - - - - - - -3.98 - -0.77 - -4.06 -4.87 - - -4.07 -2.04 0.79 -2.1 -1.37 -2.94 3.82 3.68 0.55 -1.76 -3.4 -1.71 -1.8 -3.38
- - - -3.31 - - - -1.33 - -1.55 -2.62 - -3.6 -2.52 - - -4.39 - - - - - - -0.18 - 3.97 3.9 - - - -3.61 -3.34 -
- - - - -4.24 -3.06 - -4.75 - - -0.83 -3.91 -0.66 - -1.9 -0.41 -1.88 -3.83 -1.93 - -2.38 -0.46 -2.44 -2.16 -0.54 3.76 3.84 - - - -5.12 - -
- - - - - - -2.71 - - - -1.65 - 1.59 - - -1.19 -0.77 -0.03 -0.72 -1.78 -0.75 -2.78 -1.81 -1.94 1.52 3.57 3.41 - - - - - -
- - - - - - - - -5.08 - - -5.4 - - - - -2.45 - - - - - - - - 4.21 3.83 - - - - - -
- -2.72 -7.59 - - - -5.32 -2.45 -3.97 -3.9 - -1.02 - -1.22 - - -0.73 - - - - -2.61 -3.58 -3.34 -2.42 3.93 3.86 - -4.73 -1.22 -4.41 - -2.3
- - - - - - - - - - -3.82 -3.6 -6.49 -2.19 - -2.21 -7.06 -3.08 -3.85 -3.04 -3.47 -2.83 - - -7.37 4.06 3.92 -8.72 - - - - -
- -6.56 - - - - - - - -6.19 -3.72 -2.59 -5.84 -3.17 -3.17 -2.85 -4.18 - - - - -3.24 - -4.01 - 3.97 3.97 -2.79 - - -2.56 -0.93 -
- - - - -8.43 - - -6.97 - - -2.69 -5.12 -5.2 - -4.53 -5.2 -4.83 -6.04 -1.9 -5.21 -3.86 -6.13 -1.92 -6.37 -5.08 4.03 3.96 - - - -7.33 - -
- - - - -5.91 - - - - - - - -4.8 - - - -7.41 - - - - - - - - 4.06 4.03 - - - - - -
- - -3.55 -3.65 - - - -1.09 - - - - -0.82 - - -2.41 -7.82 - - - -0.39 -1.1 - 0.01 0.3 3.63 3.71 -0.08 - -2.32 -0.38 -0.81 -2.31
- - -4.43 - -5.41 - - - -5.1 - - - - - - - - - - - - - - - - 4.1 3.98 - - - - - -4.0
- - - - - - -4.99 -4.81 -5.42 -3.11 -1.56 -2.18 -5.57 - -0.07 -0.26 -3.99 -0.9 -1.63 -1.51 -0.43 -4.2 -3.32 -4.21 -4.45 3.37 3.47 1.19 0.15 -0.72 0.3 -0.03 -0.84
- - - - - - - -3.84 - - - - - - - - - - - - - - 1.24 - - 4.14 3.69 - - -5.33 -4.2 - -
- - - -0.53 -4.43 - - -0.79 -0.94 - - - - - - - - - - - - - 1.16 -2.36 - 4.14 3.47 - - - - - -
- - - -3.58 - - - - - -1.28 - - - - - - -5.45 - - -1.34 - - - - - 3.88 4.08 -2.18 - - -2.34 - -
- - - - - - - - - - - - - - - - -4.26 - - - - -3.32 - -2.64 - 4.06 3.97 -2.58 -3.22 -4.35 - - -
- -11.93 - - - - - - - - - - - - - - - - - - - -9.81 - -3.01 - 4.21 3.84 -8.33 -5.71 -6.7 -6.47 -6.02 -10.2
- - - - - - - - - -0.69 - - - - - - -5.48 - - - - - - - - 4.16 3.86 - - - - - -
- - -7.09 -5.61 -3.39 -3.16 -4.12 - - - -0.53 -0.89 -1.19 -4.77 -1.11 -1.5 -1.62 -0.81 0.83 -0.02 -0.64 -3.57 - -1.13 -1.73 3.54 3.48 0.68 -2.3 -3.3 -2.6 -2.81 -4.13
- - - - - - - - - -7.27 - - - - - - - - - - - -4.59 - -5.31 - 3.99 3.66 -1.56 -4.38 -4.21 -1.22 1.81 -3.99
- - - - - - - - - - - - - - - - -4.11 - - - - -5.15 -4.18 - - 4.01 4.04 -3.45 - - -5.27 -3.2 -
-4.74 -3.84 -9.35 -8.94 -9.57 - -4.5 - - - - -2.76 -6.0 -6.5 - - -8.8 - - - - -4.05 -5.14 - -2.43 4.1 3.89 -4.67 -2.77 -3.85 -3.78 -5.8 -2.77
-0.79 - - - - - - - - - - - - - - - -8.28 - - - - - - -1.03 - 4.15 3.82 - - - - - -
- - - - - - - - - - - - -5.62 - - - -6.21 - - - - - -4.25 - - 4.05 4.04 - - - - - -
- - - - - - - -3.59 - - - - - - - - -6.8 - - - - - -1.45 -1.26 - 4.07 3.93 - - - -3.09 - -
- - - - - - -1.5 - - - -1.15 -3.64 -1.72 -2.05 - -2.14 -4.13 -1.24 -1.34 -2.15 -3.7 -1.67 - 2.7 -3.6 3.61 3.37 -2.5 - -4.76 -1.97 -2.1 -4.62
- - - - - - - - - - - - - - - - 0.25 - - - - - 2.47 - - 3.78 3.65 - - - - - -
-6.61 -8.03 -6.47 -7.61 -8.06 -6.07 - -6.68 - - -4.26 1.5 -5.4 1.94 - - -4.41 -4.25 - -6.0 -5.97 -0.68 -7.35 -3.67 -5.87 3.84 3.46 - - - - - -
- - - - - - - -2.87 - - - - - - - - - - - - - -3.37 -3.14 -3.27 -3.98 3.9 4.12 - -3.85 -4.14 -5.23 -3.47 -
- -5.69 - - - - - - - - - - - - - - -5.68 - - - - - - - -3.03 4.06 4.01 - - - - -4.22 -
-6.77 -9.31 -7.59 - - - -7.09 -8.24 - - -4.14 1.46 -5.38 2.22 - -6.15 -5.66 - - -7.48 -6.13 -0.8 -6.19 -2.33 -4.89 3.79 3.44 -8.32 - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - 4.24 3.67 -0.08 - - -1.82 -2.42 -
-5.13 -5.74 -5.45 -5.51 -2.87 -2.82 -4.47 -3.5 -5.06 -2.97 -3.13 -1.81 -3.86 -2.29 -1.29 -2.81 -1.92 -3.02 -3.36 -3.19 -2.36 -2.24 0.96 -0.35 - 3.06 2.92 1.5 0.72 0.11 0.74 1.76 -0.2
-5.42 -7.58 -3.67 0.04 0.02 0.61 -4.68 - -7.69 -7.13 -7.66 -3.43 - -4.82 - - - - - - - -3.95 - - -4.55 3.8 3.92 - - - - - -
- - - - - -5.43 -6.31 - - - - -2.71 -6.38 - -4.29 - -3.71 - - -4.39 - -1.85 - -2.74 -3.45 4.09 3.79 -3.5 -5.13 -4.77 -2.33 -0.15 -5.26
- - - - - - - -2.62 - - - - - - - - - - - - - - - - - 4.19 3.87 - - - - - -
- - -2.29 - - - -2.78 -2.61 - - - - - - - - - - - - - -1.69 - - - 4.12 3.89 - - - - - -
- -5.63 -5.76 - - -5.31 - -7.56 -6.71 - - - - - - - - - - - - -6.8 - -4.96 - 3.95 4.13 - - - - - -
- -5.81 - - - - - - -4.19 - - - - - - -0.46 -4.64 - - - - -3.12 - - - 3.84 3.95 0.03 - - -1.01 -0.4 -
-3.35 -5.05 -2.39 -5.21 -4.53 -5.75 -3.2 -5.47 -7.02 - - - -5.7 - -2.61 -4.7 -3.95 -5.54 -3.06 -5.71 -4.68 -6.55 -2.28 -4.87 -4.58 3.7 3.41 0.35 -0.23 -0.29 0.62 1.36 -0.0
- - - - - - - - - - -2.01 - -3.1 - - -0.13 -4.29 0.35 -1.07 -1.14 0.22 -0.75 - -2.3 - 3.85 3.71 - - - - - -
- - - - - - - -4.33 - - - - - - - - - - - - - - - - - 4.11 3.97 - - - -6.28 - -
- - - - -7.75 -5.62 - - - - -2.04 0.05 -5.33 -5.41 - -4.33 -4.06 - - - - -0.38 - -3.42 -2.85 4.14 3.68 - - - - - -
-0.6 0.81 -1.03 -2.87 -2.06 -2.02 -0.1 -1.84 -0.81 -1.24 - 1.11 - 0.86 - - -4.53 - - - - -2.27 - - -0.14 3.63 3.24 - -2.19 - -3.4 - -
- - - - - - - - - - -3.63 - - - - -4.07 -6.02 -3.91 -4.02 -1.76 -1.59 -1.31 - -2.92 -3.95 4.06 3.88 - - - -5.85 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.