Heatmap: Cluster_219 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - -5.26 - - - - - - - -1.9 2.7 - - - 2.15 - - - - -1.37 2.43 2.28 3.36 -2.77 -0.51 - - - - - -
- - - - -5.3 - -5.02 - - -3.1 1.45 1.46 3.49 - - 1.8 1.37 0.89 -0.33 -2.5 -1.06 -4.93 - -4.25 2.0 0.21 0.59 - - - - - -
-1.5 -2.24 -2.47 -4.27 -5.08 -3.81 -2.7 -4.95 -3.96 -5.11 1.98 -7.27 2.07 -5.26 -1.16 1.51 1.83 1.82 1.06 0.46 0.97 -7.78 -0.43 0.49 2.03 -0.46 -0.28 -7.98 -8.28 -7.04 -8.35 - -6.66
0.46 -0.39 - -1.25 -1.77 - - -0.31 - -0.56 - - 2.46 - - - 2.83 - - - - - - 2.29 2.57 0.84 1.77 - - - - - -
-2.69 -1.76 -0.85 -3.34 -3.85 - - - -2.96 -2.65 1.76 -1.55 1.46 - 2.92 1.62 1.67 1.7 -0.57 -0.05 0.98 -0.69 - - 1.74 -3.03 -1.56 - - - - - -
-4.89 - -5.82 -4.33 -6.41 -5.61 - -0.1 -2.26 -1.91 1.29 -1.6 3.37 - -1.31 -0.45 1.71 0.59 -0.17 -1.59 -0.94 -0.81 -1.72 -2.75 3.25 -6.83 -2.75 - - - - - -
- - - - - - - - - - -2.14 -0.19 2.6 - - - 1.91 2.07 - -0.27 - 2.29 - -0.43 2.03 -2.72 -2.51 1.6 -2.3 - -2.4 -1.21 1.66
- -6.18 -7.96 -6.1 -6.59 - -3.19 -5.11 -7.24 - 0.24 1.09 3.21 -0.06 - -1.93 2.62 -3.18 -3.55 -1.76 -2.2 0.84 0.59 -1.45 3.02 -3.68 -2.16 - -5.09 - - -5.07 -4.82
- - - - - - - - - - -2.69 - 2.78 - -2.59 -5.47 2.85 -2.21 -4.19 - -3.03 -3.15 0.43 -0.44 3.93 -2.89 -1.2 -4.26 -8.39 - -5.67 -3.62 -7.45
- - - - - - - - - - 2.36 - 2.11 -0.09 -1.31 2.55 1.1 2.32 1.06 1.6 1.05 -4.5 -4.2 -3.65 0.53 -2.38 -2.72 - -6.24 - - - -4.05
- - - - - - - - - - - -2.19 4.11 - - - 1.84 - - - - -3.14 0.87 - 3.29 -6.15 -1.81 - - - - - -
- - -5.83 -7.45 -7.91 - - - - - -2.55 - 2.82 -4.66 - -2.87 2.7 - -5.69 -4.76 -4.14 -4.27 2.21 0.25 3.63 -1.88 -1.14 -6.74 - - - - -
- - - - - - -9.45 - - -8.5 -7.36 -0.95 3.15 -1.1 -4.81 -7.48 3.02 - - -8.49 - 2.1 1.64 -1.28 2.8 -6.2 -2.47 - - - - - -
- - - -6.04 - - - - - -5.63 - -0.85 3.93 -1.55 - - 2.33 - - - - -3.66 1.26 - 3.16 - -1.47 - - - - - -
- - - - -7.98 - - -2.83 -2.99 - 2.04 - 2.78 - -0.15 1.73 1.55 1.67 0.6 0.3 0.92 - - -5.9 2.02 -0.73 -0.31 -1.51 -2.58 -2.51 -2.15 -2.05 -3.15
-6.16 -6.07 -5.94 -5.82 -5.77 -7.08 -2.04 -6.44 -5.96 -8.79 0.35 -1.97 3.31 -2.19 -2.11 0.25 1.44 -0.55 0.14 -0.32 -0.07 -1.06 -0.93 -1.23 3.08 -1.73 -0.6 -1.29 -2.69 -1.34 -1.3 -0.73 -1.08
- - - - - - - - - - -0.13 - 3.58 - - -0.19 2.25 -0.22 -0.93 -2.06 -1.4 -1.5 -2.09 -0.36 3.38 -2.49 -1.08 -4.18 - - - - -
- - - - - - - - - -4.14 -5.88 - 3.24 - - - 2.47 - - - - -5.78 -2.16 - 4.14 -8.87 -3.48 - - - - - -
-9.46 -11.31 -8.65 -7.5 -7.35 -6.75 -0.99 -6.34 -7.33 - 1.45 0.31 2.25 0.44 0.03 0.75 0.75 0.35 0.39 0.38 0.15 0.88 -3.56 0.11 2.24 -1.28 -1.15 -0.47 -0.75 -0.5 -0.64 -0.61 0.09
- - - - - - -3.36 - - - - -3.63 2.95 - - - 2.58 - - - - -2.31 0.34 - 4.14 -6.85 -5.9 - - - - - -
- - -7.8 -8.08 -7.87 - - - - - -2.04 - 3.38 - - -2.76 2.22 -3.49 -4.18 -4.25 -4.22 -5.59 -1.2 -4.21 4.04 -4.23 -1.81 - - - - - -8.86
- - - - -9.87 - -8.58 - - - 2.12 -2.11 1.72 -4.1 1.32 2.12 1.54 1.67 1.48 0.79 1.03 -1.91 -4.68 -4.23 1.52 0.32 0.12 - - - - - -
1.41 -0.12 0.46 -0.99 -3.6 -4.42 2.04 -1.38 -2.33 -5.14 -5.27 1.75 2.11 -0.38 - -5.83 1.74 - -4.6 -5.83 -4.63 -1.12 -1.32 -2.82 2.08 0.61 0.98 -2.48 -0.76 -0.94 -2.72 -2.29 -1.36
-7.05 -7.66 -4.3 -2.61 -2.34 -1.93 -5.6 -4.34 -4.01 -4.44 -0.64 -1.58 2.94 -1.51 1.82 0.6 1.62 -0.88 -0.49 -1.26 -0.45 0.55 -0.61 -1.04 3.16 -4.53 -3.41 -1.95 -3.6 -4.33 -2.03 -2.13 -3.89
- - - - -5.08 - - - - - - - 3.23 -3.62 - - 3.48 - - - - -2.04 -2.26 -4.61 3.54 -9.22 -2.71 - - - - - -
- - - - - - - - - - 2.58 - 3.19 - - -1.65 1.72 -2.71 -2.81 -2.88 -2.85 - -2.17 -3.04 3.74 - - - - - - - -
-7.36 -7.89 -4.67 -5.96 -5.34 - -0.8 - -9.04 -6.29 -0.84 0.47 2.82 0.23 -6.62 -2.85 3.53 -3.85 -2.41 -4.13 -3.52 -1.28 -0.15 -5.88 2.74 -0.9 0.27 -4.25 -4.0 -4.72 -5.35 -7.08 -3.32
-6.27 - - -4.33 - - - -2.39 -3.29 - 1.73 -0.02 1.82 - -4.53 1.21 2.33 0.34 1.74 -0.93 0.04 -1.4 0.34 - 2.79 -0.76 0.53 - - -5.66 - - -0.58
- - - -11.38 -9.77 - -7.93 -9.83 - - 0.8 -10.06 2.26 -5.01 -4.3 1.54 1.55 1.88 1.19 0.94 0.95 -4.79 -1.08 -1.46 3.25 -3.72 -2.48 -3.9 -7.77 -8.48 -7.06 -6.09 -5.33
-7.48 -6.76 - -7.88 -7.5 - -8.15 -7.36 - - -3.11 1.63 2.68 -0.54 -6.5 -6.59 1.39 -4.31 -6.53 -8.18 -5.83 1.66 -1.23 -3.44 3.42 1.48 1.44 -8.28 -6.75 -8.15 -8.96 - -5.73
- -9.48 - - - - -7.4 - - - 1.02 -1.84 3.65 -2.17 - -7.43 1.01 -5.68 -5.15 - - 0.02 -1.6 - 3.84 -5.25 -2.92 - - - - - -
-4.87 -4.61 -5.83 -6.42 -6.53 - -5.13 -2.96 -3.19 -5.1 -3.59 -0.08 3.08 -1.79 -6.17 -4.95 1.35 -3.2 -3.75 -3.57 -5.67 1.66 0.81 2.04 3.0 0.32 0.68 - - - -9.64 -7.14 -6.36
- -5.26 - - - - - -5.07 - - -6.18 - 4.07 - - - 2.27 - - - - -2.74 -1.88 - 3.44 - -6.3 - - - - - -
-6.83 - -7.99 - -8.0 - -5.8 - - -4.21 -2.75 -0.41 2.56 -0.71 - - 2.43 - -4.2 - -4.82 2.32 0.16 -2.2 3.76 -6.46 -2.55 - - -6.88 - - -
-1.58 -4.58 -2.89 -5.59 - -6.83 -3.0 - - - - -0.25 3.1 -0.21 - - 1.94 - - - - 2.83 -2.66 0.92 2.39 -0.37 -0.29 0.27 -5.64 -6.58 -4.2 -0.31 -2.77
- - - - -6.45 - - - - - 1.35 - 3.37 - -1.97 -3.23 2.42 -3.07 -1.47 -2.65 - - 0.67 -2.23 3.29 -0.59 0.56 - - - - - -
1.43 0.29 -1.42 -1.76 -4.28 - 1.62 -0.79 -0.94 -1.41 -1.94 -0.98 1.11 - 0.03 - 3.38 - - - - 1.49 -0.1 - 2.23 -4.21 -2.31 - - - -1.84 -2.01 -1.96
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - -5.49 - - -3.7 -1.64 2.87 -2.31 -3.04 -1.4 2.19 0.25 -1.66 - -4.69 -1.08 0.97 -3.3 3.94 -3.25 -1.44 -5.95 - -4.69 -5.72 -5.79 -5.62
- - -7.89 -4.28 -1.0 - -5.51 - - - -3.58 -3.18 2.84 -3.49 - -3.58 2.19 -3.42 -2.35 -2.78 - -1.29 2.13 -1.5 3.88 - -4.43 - - - - - -
-1.47 -1.94 -3.71 -5.5 -8.42 -7.24 -0.29 -4.86 -8.44 -6.46 0.2 -0.61 2.86 -0.33 -1.67 -1.05 1.46 -1.18 -2.02 -1.67 -2.45 0.65 -0.03 -0.67 2.57 0.06 0.45 0.13 -1.29 -0.51 0.21 0.45 -0.81
-0.55 -0.86 -0.21 -0.85 -0.43 -1.0 -0.76 0.44 -0.23 -0.52 0.43 0.05 0.53 -0.56 -0.76 -0.57 1.31 0.57 0.63 -0.05 0.47 0.16 0.47 -1.39 0.85 -0.68 -0.45 -0.44 0.15 0.07 -0.38 -0.28 0.52
-4.98 -4.71 -5.44 - - - -2.63 - - - -1.28 1.04 1.63 - 0.42 1.48 0.83 -1.83 -0.35 -0.25 -1.27 1.76 0.78 -0.3 2.57 -0.51 0.14 0.0 -0.28 -2.01 0.7 0.18 -1.05
- - - - - - - -4.4 - - -4.1 -1.97 3.34 - - -5.22 1.16 - - - - 1.52 0.5 -0.34 3.77 -0.64 -0.29 - - - -6.0 - -
- -8.33 - - -7.61 - -3.29 - -5.41 - -1.56 0.8 2.05 0.89 -1.91 -1.71 1.15 -1.5 -2.53 -2.59 -6.47 2.43 -0.85 -0.04 2.76 0.26 -0.14 0.33 -1.39 -1.32 0.43 0.52 -0.52
- -9.36 - - - - - - - - -4.17 -3.66 3.39 -2.8 -4.14 -6.2 2.14 -7.62 -6.72 -6.79 - 0.05 0.7 -5.3 3.87 -4.73 -1.34 - - - - - -
-10.14 -11.25 -12.92 -12.09 - - -6.08 - - - -4.52 -2.46 3.48 -7.48 - - 2.41 - - - -10.45 -3.5 0.93 -3.6 3.75 -2.16 -1.28 -11.39 -7.47 -7.43 -10.94 - -3.89
-1.02 -0.25 -2.71 -2.52 -5.24 - -5.05 -3.15 - -3.46 - 0.63 2.42 -0.26 - - 1.38 - - - - 1.94 -0.98 - 3.95 -2.12 -0.64 -4.11 - - - - -4.01
- - - - - - - - - - - -2.62 2.37 0.14 - - 2.7 - - - - 2.16 0.16 0.92 3.6 -3.45 -1.6 -4.51 - - - - -
-1.52 -1.35 -3.42 -5.35 - - -4.62 - - - 1.88 - 2.38 - -1.98 1.45 1.87 1.28 1.42 1.84 1.47 -4.5 -1.69 - 2.09 -3.5 -1.33 - - - - - -
- - - - - - - - - - - - - - - - 3.28 - - - - - - - - - - - - - 3.48 - 3.6
- - -10.63 - - - -8.28 -10.58 - - -0.7 -2.76 3.12 -2.68 -3.4 -2.36 1.98 -2.62 -2.97 -2.96 -3.3 0.04 0.4 -1.74 3.95 -3.34 -1.32 - - - - - -
-5.79 -3.29 -3.64 -1.33 -3.71 -4.89 -2.59 -3.8 -2.8 -1.32 -0.45 0.16 2.6 -0.81 -2.39 -2.63 2.76 -0.83 -5.74 -3.22 -2.78 0.46 0.25 -2.27 3.17 -3.54 -3.18 -1.02 -1.15 -0.61 -1.07 -0.8 -1.27
0.41 -0.98 0.58 0.27 -1.19 -1.58 2.35 -3.31 -5.21 -4.31 -1.79 0.8 2.41 -1.46 -8.25 -3.3 1.88 -6.59 -4.38 -8.35 -5.32 0.2 -4.47 - 2.86 0.11 0.38 - - - - - -8.19
- - - - - - - - - - 1.75 -0.44 2.28 -0.75 0.95 1.07 2.04 1.57 0.8 -0.52 0.51 0.1 - - 2.68 -2.2 -0.34 - - - - - -
-1.38 0.27 -1.43 -1.0 -3.47 - -2.97 -1.91 -1.62 -4.14 -2.48 -1.2 2.76 -1.93 - - 1.11 - - - - 0.62 -0.25 - 3.91 -2.33 -2.2 -0.38 -4.05 -3.01 -3.67 -1.17 -0.84
-1.21 -1.73 -3.05 -7.52 -3.93 - -3.09 -1.49 -0.55 -1.52 1.46 -1.38 2.46 - -0.52 -0.38 2.52 -0.05 -1.48 -0.84 -1.98 -3.62 -0.29 -0.22 3.4 -4.22 -2.06 - -6.21 - - - -
- - - - -4.61 - - - - - -2.36 -2.4 3.16 - - - 2.55 - - - -1.46 - -0.82 -0.95 4.02 - -4.26 - - - - - -
-4.08 -4.13 -6.44 -6.68 -6.09 -7.79 -3.41 -0.62 -2.33 -3.16 0.85 -1.33 2.8 -0.67 -2.87 -0.01 2.01 -0.42 -0.61 -0.78 -1.01 1.25 -2.77 -3.93 3.32 -0.17 -0.47 -5.15 -7.11 -7.4 -5.35 -4.69 -6.79
-2.75 -3.95 -4.83 -5.17 -6.28 - -2.98 - -8.59 - -6.82 -0.09 3.65 -3.59 - - 2.2 - - - - -4.61 0.55 -1.92 3.6 -3.82 -1.25 - -9.2 - - - -9.15
0.13 -1.13 -1.23 -2.42 -1.79 -4.5 0.79 -0.65 -0.92 -2.33 -2.49 0.74 0.99 -0.12 -2.2 -3.67 0.96 -2.83 -2.23 -6.0 -3.64 1.74 2.17 -2.83 1.22 0.19 -0.02 0.65 -2.76 -1.91 -0.39 1.71 0.58
- - - - -3.3 - - -2.43 - - 2.26 - 1.66 - - 0.92 2.14 1.58 1.56 0.65 2.22 -0.51 - -0.83 1.98 -3.6 -2.47 -2.69 -3.41 - -2.67 -1.31 -
-2.27 -2.98 -3.48 -4.8 - -4.58 2.05 -3.9 -4.79 -4.8 -3.8 -5.38 2.88 - -3.37 -3.14 1.83 -1.98 -5.4 -4.47 -5.43 -4.15 - - 3.42 -1.37 -1.15 -0.54 0.38 0.06 -0.94 -0.52 -0.23
- - - - - - - - - - -0.81 -5.23 3.27 -6.39 - -3.27 2.34 -2.15 -4.42 -3.36 -1.67 -8.49 -0.7 - 4.01 -6.47 -2.69 - - - - - -
-0.39 -1.48 -1.28 -1.92 -2.11 -4.3 1.64 -1.55 -2.09 -3.14 -3.82 1.12 1.13 -0.71 -2.61 -4.13 1.18 -4.05 -3.8 -5.73 -4.19 2.56 1.78 -2.16 1.22 -0.8 -0.79 0.46 -2.55 -2.25 -0.66 1.53 0.07
-3.13 -8.28 -1.07 -1.22 -1.93 -3.95 -0.88 -7.96 - - - -0.71 3.01 0.25 -7.69 - 2.39 - - - - 2.67 -1.84 -2.51 3.09 -4.48 -0.77 - - - - - -9.68
- - - - - - - - - -3.84 - 0.59 -0.35 - - - -0.09 - - - - 2.69 3.22 -1.21 1.52 -0.86 -0.33 0.36 0.04 -0.55 0.04 2.29 -1.39
-3.67 - - - -5.27 - - - - - 0.47 - 2.43 - - -1.63 2.3 2.3 -0.15 1.02 0.99 - - - 3.44 -5.62 -3.72 - -3.8 - -3.83 - -
-0.11 -1.26 -0.78 -0.5 -0.1 -3.12 -1.13 -0.26 -0.45 1.16 - -1.34 2.67 1.76 - -3.0 1.02 - - - - 0.63 -0.71 -3.17 3.09 -6.41 -3.28 -2.11 -3.93 -0.79 -2.3 -0.43 -3.9
- - - - - - - - - - 2.24 -1.35 3.31 -4.15 0.75 1.82 0.59 0.44 0.77 0.88 0.31 -4.09 - - 2.29 -4.55 -5.46 - - - - - -
- - 1.89 - - 1.97 - - - - - - - - - - 2.98 - - - - 2.52 - - - - - 0.82 - 2.5 - 0.98 1.23
-3.08 -3.33 -7.56 - -9.79 -10.33 -1.73 -9.46 -9.16 - -3.5 1.59 3.45 1.51 -6.39 -7.12 2.02 -4.73 -6.23 -7.71 -5.56 0.64 1.38 -5.32 2.24 0.26 0.42 -6.24 -7.22 - -11.06 -10.23 -8.17
-4.11 - -6.64 - - - - - - - 1.76 -4.25 3.09 - -1.91 -2.01 3.07 -4.16 -1.95 -2.01 -1.56 - -1.25 -3.75 3.4 -5.06 -2.75 - - - - - -
- - - - - - - - -1.4 - - - 3.03 - - - 2.43 -0.32 - - - -1.49 -2.1 - 4.15 - - - - - - - -
- - - - - - - - - - -2.03 - 3.28 -2.06 -3.06 1.22 0.68 1.36 -2.68 - -0.32 -2.58 -4.77 - 3.73 -0.51 0.06 - - - - - -
-0.22 -2.56 0.39 0.05 -0.54 -1.65 0.0 -1.33 -2.75 -2.37 -2.0 0.02 3.27 -1.5 - -3.0 0.75 -1.61 -2.53 -3.01 - 2.35 -4.62 -4.75 2.92 -3.87 -2.29 - - - - -5.65 -3.09
-2.3 -1.9 -2.35 -1.77 -1.57 -2.9 0.46 -1.46 -1.9 -2.79 -0.95 -0.3 2.32 -0.22 -6.79 -2.01 1.39 -2.06 -2.28 -2.67 -2.31 0.97 0.81 0.25 2.68 -0.49 0.08 -2.09 0.69 0.88 -1.38 -1.75 0.15
-3.97 -5.93 - - -4.47 - -2.3 -1.11 -0.25 -3.16 1.49 0.91 1.31 0.44 -0.67 0.36 1.49 -1.6 -0.7 0.56 -0.15 0.53 0.53 - 2.03 -0.16 -0.6 0.53 -0.6 -0.6 0.24 0.22 0.11
-4.07 -5.17 -3.21 -4.11 -5.61 - - - - 0.25 -0.84 -0.56 3.59 -1.78 - 0.01 1.56 - - -2.46 -3.42 1.13 -0.02 -2.03 2.1 1.8 1.3 - - - - - -3.3
- - - - - - -7.19 - - - 0.92 - 3.62 - -0.17 0.51 1.49 0.34 0.4 0.6 0.2 - -3.32 - 3.04 -5.02 -4.28 - - - - - -
- - - - - - - - -4.86 - -3.82 1.49 2.5 -1.05 - - 1.64 - - - - 2.56 1.54 - 3.54 -4.02 -1.68 - - -4.98 - - -
-4.6 - -6.05 - -6.74 - -3.36 -5.38 - - -0.62 -3.31 4.02 - -4.52 -2.03 0.95 - - -4.62 -2.71 -3.36 - -3.55 3.6 -0.79 -0.71 - - - - - -
-4.01 -3.74 - -7.61 -7.56 -4.95 -4.38 -7.76 -7.84 -4.28 -0.65 -5.91 2.73 -3.1 -4.74 -1.31 1.37 -2.41 -1.55 -2.17 -1.95 -3.46 -0.5 -5.35 3.89 -3.69 -2.59 1.39 -2.76 -2.93 0.15 -0.14 -1.23
-6.89 -7.89 -10.08 - -9.85 - -7.15 - - - 2.12 -3.6 2.76 - -5.09 1.09 2.06 1.96 1.25 0.65 1.07 -1.72 -1.78 -3.07 2.1 -2.46 -1.62 -8.75 - - - - -8.66
- - - - - - - - - - 2.2 -2.09 1.66 -1.09 -1.09 2.87 1.36 2.45 1.05 2.21 0.17 -3.18 -2.21 - -2.05 -2.56 -2.35 - - - - - -
- -1.51 - - -4.19 - - -2.73 0.71 - - - 1.04 - - - 3.14 - - - - - 1.9 - 4.01 - -5.22 - - - - - -
- - - - - - -7.65 -5.86 - - - 0.31 2.42 0.29 - - 1.82 - - - - 3.06 -0.38 0.3 2.74 0.43 0.63 -1.0 -4.25 -4.13 -2.14 -0.48 -2.55
- - - - - - - - - - 3.92 - - - - - 2.46 - - - - 2.37 - - - 1.05 - - - 2.35 - - -
- - -9.43 - - - -7.65 - - - 0.88 -1.88 2.61 -1.27 0.53 1.73 1.23 0.84 1.24 1.25 0.76 0.79 -0.04 0.11 2.37 -5.85 -4.97 - - - - - -
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.