Heatmap: Cluster_13 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - 1.42 - - - - - 0.52 - - 2.08 3.16 1.07 - - 0.94 0.06 - - 2.49 0.37 1.23 -0.32 - - - -0.82 -
-2.13 -4.43 -3.33 -1.09 -3.9 -2.56 0.96 -3.56 -4.06 - -0.08 0.4 0.11 -0.02 -2.06 -0.6 2.54 -0.44 -0.22 -0.78 -1.86 -0.34 -0.48 -0.76 0.85 -1.66 -1.24 0.91 0.69 0.73 0.72 1.48 1.07
-11.5 - -10.37 -12.21 -12.64 - -3.85 - - - 1.27 -5.19 -2.28 -3.83 2.45 0.59 3.47 1.05 1.16 2.08 1.2 -5.8 - -1.76 -4.93 -1.2 -0.8 - - - - - -
- - - - - - -1.19 -1.05 -2.65 - - - - - - - 4.75 - - - - -0.07 - 1.84 - - - -3.04 - - -2.94 -2.75 -
- - - - - -1.1 -1.94 - - - - - -1.97 - - - 4.27 - - - - - - -0.14 - 2.73 2.37 - - - - - -
- - - - -5.45 - -1.46 - - -5.44 -1.28 0.58 -0.39 0.12 -0.11 -1.51 1.43 0.93 0.38 -0.73 -0.77 1.09 0.25 -0.96 1.23 -0.08 0.23 0.74 0.99 0.86 0.71 1.24 1.42
- - - - - - - - - - 0.72 - 0.96 - -1.13 - 3.52 2.12 0.43 0.36 -1.19 -0.48 - 0.2 2.08 0.96 0.35 - - - - -0.36 -
-2.2 -2.01 -1.64 -1.65 -1.39 -1.31 -0.81 -2.47 -3.91 -2.45 -0.32 -0.24 1.65 -0.37 -1.14 -0.49 2.13 0.54 -0.71 -0.49 -0.49 1.37 0.78 -0.39 0.7 0.29 0.82 -0.16 -0.17 -0.01 0.06 0.08 -0.07
- -1.85 -2.71 -1.71 -3.49 - -2.21 - - - - 2.21 0.73 1.79 - - 2.48 - - - - 3.32 1.39 -1.4 1.21 -2.24 0.13 - - - - - -
- -2.75 -3.8 -4.97 - - -4.32 - - - 1.67 - -1.54 -0.95 -0.46 -1.03 2.55 2.3 0.61 0.34 1.13 - - -1.2 0.68 -3.18 0.5 1.32 0.61 -0.4 0.26 0.46 -0.33
-4.39 -3.33 -3.75 -2.77 -4.82 -5.51 -5.01 -4.55 -5.11 -3.11 1.55 -3.05 0.35 -2.12 -0.71 0.46 3.37 1.41 0.94 0.69 0.69 -1.53 -1.86 -3.46 0.36 -1.36 -0.22 -0.49 -0.43 -0.36 -0.29 -0.66 -0.38
-3.9 -1.99 -4.8 -4.4 -4.11 -5.21 0.5 -3.74 -3.52 -5.89 1.32 1.27 1.17 1.1 -1.38 0.61 1.51 0.61 0.41 0.75 0.62 0.7 0.06 -1.19 1.35 0.13 0.29 -2.07 -1.83 -0.23 -2.08 -1.11 -0.39
-6.57 - -7.78 -5.32 -5.93 -5.65 -7.56 -3.34 -4.08 -5.86 -6.87 -0.25 1.88 1.5 - - 2.84 - - - - 2.94 1.06 -1.65 0.8 -1.16 0.07 -0.58 -0.59 -0.03 0.02 0.5 -2.59
- - - -7.87 -10.0 - -6.72 - - - - -0.23 0.91 0.92 - - 3.3 - - - - 2.58 0.53 -2.79 0.22 -0.68 0.64 0.04 -0.0 0.6 0.74 1.12 -2.04
- - - - - - - - - - 1.5 -0.54 - - - - 2.32 - - - - - - -0.79 - 3.79 3.28 - -1.37 - - - -
-2.35 -2.36 -6.1 - -5.86 - -1.96 -5.41 - -4.65 -3.93 0.46 1.25 -1.55 -3.55 -4.64 2.08 -4.48 - -4.65 - 0.79 1.47 -3.0 0.79 0.67 1.51 0.42 -0.7 1.0 0.58 0.81 2.5
- - - - - - - - - - - - - - - - 3.53 - - - - - 4.36 - - -0.06 - - - - - - -
- - - - -1.19 - - -0.21 - - -1.95 -1.53 1.05 1.64 -1.53 -0.62 3.66 -2.45 -1.56 -2.62 -1.59 2.26 1.35 0.03 1.09 -2.91 -0.79 - - - - - -
- - - - - - - 0.2 - - 1.87 -0.12 -2.2 - 1.47 1.38 2.29 -0.04 1.02 0.6 0.63 - - - - 2.61 2.21 - - - - - -
-1.42 -2.73 -6.22 - -6.4 -4.23 -5.12 -1.72 - -5.72 0.97 -1.65 0.92 - -1.1 0.02 2.04 0.78 -0.22 -1.02 -0.64 - -2.05 -2.18 1.07 0.98 1.4 0.47 0.17 1.13 1.26 1.29 0.89
-3.92 -3.49 -2.82 -6.17 -6.73 - 0.55 - -6.43 - -1.18 1.24 2.79 1.86 -0.14 0.13 2.47 -1.55 -1.76 -0.77 -1.49 2.53 -5.55 -2.51 1.38 -5.74 -3.79 - -5.4 -4.11 - -6.46 -6.4
-1.19 -2.88 -0.6 -1.49 -0.71 -2.29 0.89 -2.43 -4.2 -2.68 -2.67 0.39 0.44 -1.74 -2.74 -2.24 1.41 -3.18 -0.77 -1.7 -1.37 1.67 0.19 0.37 0.98 1.13 1.47 0.3 0.12 0.2 0.56 -0.08 1.26
-4.03 -3.68 -3.02 -3.4 -2.42 -3.65 -2.78 0.44 0.29 0.43 0.27 -1.28 0.15 -0.61 0.32 0.19 1.54 0.15 0.02 -0.76 -0.16 -1.9 -0.26 0.04 0.4 1.68 1.57 -0.23 0.05 -0.18 -1.02 0.04 1.08
-2.74 -1.88 -3.1 -2.44 -3.52 -5.06 -1.41 -5.18 - - -1.86 -0.83 1.66 0.09 -4.49 -2.63 1.45 - -2.35 -3.89 -2.51 0.72 0.49 0.78 1.51 0.35 0.35 0.77 1.24 0.93 0.46 1.44 1.63
- - - - -2.96 - - - - - - - - - - - 4.88 - - - - - - - - - -3.08 0.35 -1.67 - -0.65 -0.59 -1.64
-10.5 - - - - - -7.14 - - - -8.26 -0.19 2.07 1.1 -9.5 -8.36 3.23 - - - - 3.07 1.41 -0.95 2.0 -3.71 -0.39 - - - - - -
-6.71 -9.22 - - - - - -5.28 -5.11 -4.32 1.24 -2.55 -0.1 -2.9 2.44 2.2 0.71 1.95 1.37 1.45 1.7 -2.2 -2.96 -5.55 0.56 -1.9 -1.14 -2.26 -1.11 -0.61 -1.61 -1.77 -0.58
- - - - -5.75 - - -3.72 -6.39 - -4.94 -1.08 0.55 -1.07 - - 2.89 - - - - 1.08 1.17 -2.65 1.27 0.06 0.65 -0.8 0.55 2.13 -0.35 0.03 2.4
- - - - - - -0.15 0.02 - - - - - - - - 2.32 - - - - - - 2.62 - 3.04 3.55 - - - - - -
- - - - - - - - - - 2.67 -6.95 -1.04 - -1.9 0.72 1.39 1.57 1.7 0.32 1.21 -7.88 - 1.37 -1.41 2.09 2.19 - - - - - -
0.09 -1.0 1.39 0.5 0.96 0.04 -0.44 -0.67 -2.32 -1.43 - 0.19 0.53 - - - 3.19 - - - - 1.51 1.49 0.36 0.97 -0.46 -0.83 - - -2.35 - -2.21 -2.29
-1.51 -0.47 -4.27 -4.51 -4.89 -5.33 0.79 -5.43 -5.2 -6.6 -1.46 1.06 2.62 1.45 0.28 -0.25 1.86 -4.09 -2.49 -1.61 -2.77 3.0 -3.96 0.27 1.5 -5.71 -4.82 - -4.6 -4.37 - -6.26 -6.11
- - -3.53 -3.79 - - -1.36 - - - -0.27 0.12 0.4 - 0.13 0.9 3.52 -0.8 -2.04 -0.96 - 0.17 2.15 -2.26 1.38 0.85 1.31 -3.33 - -3.13 -2.04 -1.4 -
- -6.87 - - - - -4.12 -5.92 - - 1.5 0.47 -3.34 -5.06 1.66 0.75 0.65 2.44 2.03 1.29 1.54 -3.04 -4.18 -5.31 -3.03 -4.62 -2.52 0.41 0.38 -0.57 0.56 0.2 -0.27
-6.08 -6.74 - - - - -3.08 -4.09 - - 1.65 0.36 -3.46 -0.45 1.5 1.21 0.34 2.09 1.87 1.15 1.59 -2.98 -0.41 -2.94 -3.97 -0.92 -0.76 -0.07 -0.14 0.03 0.12 0.21 -0.55
-3.06 -3.78 - - - - -1.01 - - - -0.5 - 1.11 1.48 - -2.07 1.96 -0.32 -2.01 0.51 0.54 -2.0 1.07 0.93 0.05 0.48 1.08 0.4 1.06 0.27 0.5 0.33 1.33
- -2.09 - - - - 2.43 - - - -1.5 1.04 -0.01 - - 1.46 2.24 - - 1.76 - 1.94 - 1.6 - -0.16 1.0 0.27 - 0.08 -1.75 -1.36 -1.44
-8.27 -6.02 - - -7.97 - -2.71 -4.58 -7.6 - -0.12 -0.47 1.66 -0.05 -1.12 0.41 1.59 0.11 0.11 -0.08 -0.16 1.28 0.48 -0.02 1.83 -1.44 -0.68 0.72 0.44 0.51 0.36 0.73 0.55
-1.41 -1.69 -1.55 -1.21 -1.24 -1.39 1.16 -1.81 -1.68 -1.82 -0.05 1.01 -0.4 0.31 -1.17 0.78 1.88 0.1 0.21 -0.01 -0.56 0.29 -0.11 -0.95 0.58 0.26 0.19 0.12 0.22 0.07 -0.03 0.14 0.02
- - - - - - -0.73 - - - -2.14 1.11 -0.17 -1.37 -2.11 -3.78 2.85 - 0.92 -2.2 0.33 -0.41 1.61 - 1.55 0.63 1.38 -1.99 0.53 1.14 -0.5 -0.9 0.88
-3.01 -3.9 -3.5 -4.5 -5.33 - 0.44 -5.21 - - -3.62 0.87 1.48 -2.13 -0.98 -2.22 1.47 - -1.47 -0.97 -1.66 1.91 0.16 0.89 1.44 0.86 1.19 0.02 0.31 0.18 0.66 0.19 1.02
-1.07 -1.82 -0.59 -0.47 -0.45 -1.35 0.63 0.29 -0.66 -0.43 -2.1 0.43 0.23 0.14 -1.37 -2.2 1.47 -1.94 -1.52 -1.72 -1.62 1.28 -0.24 -0.35 1.34 0.85 1.16 -0.05 -0.12 0.15 0.08 -0.18 0.63
-5.89 -6.58 -7.32 -8.35 -5.85 -5.41 -2.46 - -9.5 -5.35 0.08 -0.73 1.81 0.46 -0.9 0.37 1.62 0.59 0.29 0.03 0.13 1.33 0.35 0.46 1.62 -2.1 -1.35 0.41 0.28 0.34 0.3 0.52 0.15
-5.45 -6.18 - - - -5.51 -3.59 - - - -1.33 0.76 2.21 2.39 -0.85 -0.3 1.93 -1.31 0.29 -0.89 -0.36 3.25 - -0.68 1.36 -7.03 -6.78 - - - - - -
0.83 1.05 -0.28 -0.98 -3.55 -3.34 0.58 -8.29 -4.19 - -1.31 1.37 2.15 1.43 -0.59 -0.8 2.23 -1.18 -0.47 -0.44 -1.3 2.48 -6.06 -3.52 1.04 -7.94 -6.86 - - - - - -
- - - - - - - -1.37 - - 1.1 0.47 -0.02 - 1.07 0.39 3.1 - - - - 3.05 0.36 1.81 -0.48 0.12 0.3 - - - - - -
- - 3.16 2.1 - - - - - - - - - - - - 4.31 - - - - - - - - - - - - - - - -
0.9 - 1.45 - - - - - 0.97 - - - - - - - 2.46 - 1.94 - - 2.52 - - - - - - - 1.85 0.76 - 2.6
- - - - - - - - - - -0.47 0.16 2.02 1.12 -0.67 0.62 2.64 -0.04 -1.19 -0.16 -0.23 2.49 1.2 -0.96 2.03 -2.74 -0.46 - - - - - -
- - - - -7.06 - - -5.59 -5.75 - -0.27 -0.75 1.61 0.81 -2.16 0.07 2.62 0.08 -0.32 -0.14 -0.81 2.59 1.69 -1.41 2.37 -2.29 -0.31 -4.09 - -4.13 -4.96 - -
-1.84 -2.37 -1.45 -2.12 -1.04 -1.21 -0.78 -1.18 -0.79 -1.51 0.44 -0.53 -0.72 - -0.38 -0.08 1.64 0.63 -0.83 0.3 -0.23 -1.09 0.14 -1.37 -0.27 0.77 1.04 0.72 0.82 0.89 0.75 0.74 1.15
-2.41 -2.28 -3.23 -2.77 -3.31 -1.72 -1.54 -2.84 -2.69 -2.48 1.57 -0.35 1.14 -0.3 0.68 0.98 2.92 1.54 1.13 0.8 0.68 -0.05 -1.65 -0.96 0.53 -2.03 -0.9 -2.89 -3.66 -4.63 -3.24 -3.02 -1.87
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - - - - - 2.37 1.32 - 2.38 - 3.74 - - - - 2.76 - - - - - - - - - - -
-0.7 -1.23 -0.91 -1.04 -2.54 -0.15 1.04 -2.63 -0.97 - -2.2 0.68 -0.39 1.69 0.55 - 2.27 -1.7 -0.8 0.72 -1.25 0.49 -1.89 - -0.41 0.93 0.9 -1.32 0.5 0.91 -0.05 -1.05 -0.38
-2.44 -2.26 -1.52 -1.46 -1.17 -0.66 -0.71 -2.45 -2.18 -1.9 1.35 -0.13 -0.39 -0.53 1.26 0.58 0.37 1.54 1.02 1.37 1.03 -0.67 -1.92 -1.86 -0.1 -0.54 -0.28 0.08 -0.59 0.13 0.42 0.29 -0.19
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - 1.06 - - - - - 2.18 - - - 1.54 - - - 4.39 - - - - - - - - - 1.33 - - - - - -
-1.18 0.2 -3.8 -2.65 -1.93 -0.03 0.81 -0.63 -1.96 - -0.03 0.69 0.91 1.34 1.44 0.44 1.99 -0.08 1.2 -0.57 0.63 0.34 - 0.6 0.15 -2.96 -2.84 -1.29 -3.59 -1.17 -1.56 -0.96 -0.25
- - - - - - - - - - - - -1.12 - - - 2.78 - -0.09 -0.15 - - - - 1.56 - -1.98 1.42 0.34 0.94 2.11 3.08 0.98
- - - - - - 1.29 - - - - - -0.1 - - 2.22 3.43 - 2.28 - - -0.11 - - - - -0.65 - - 0.03 - 1.49 2.0
-2.52 -3.67 -5.22 -3.84 -4.65 - -1.71 -3.67 -5.14 - -1.49 -1.24 -2.39 -1.23 -2.81 -1.14 4.4 - -2.36 -2.42 -2.88 -0.35 - 2.72 -0.46 -4.36 -3.5 -3.41 -5.16 - -3.91 -5.29 -5.04
- -1.55 - - - - - - - - -0.85 0.25 - 2.48 - - 3.17 - - - 0.19 2.81 - - 2.03 - - -0.68 - 0.52 -0.62 - 0.49
-1.51 -1.56 -3.39 -3.33 -2.65 -0.74 -2.33 -2.39 -2.13 -1.0 - -3.87 -0.77 - -2.86 - 4.64 - -1.89 - -2.92 -3.37 - 1.87 -2.82 -7.1 -4.21 - - - -4.95 -3.89 -
-2.3 -1.49 -1.41 -1.66 -0.62 -0.96 -1.54 -2.82 -2.11 -0.65 -0.57 -1.05 0.3 -0.07 -0.78 -1.28 2.24 -0.52 -1.12 -1.46 -0.37 -1.55 0.18 -3.62 -1.67 0.77 1.02 1.14 0.98 1.12 0.83 0.45 1.47
-4.21 -2.38 -3.3 -4.01 -5.35 -5.14 0.1 -5.24 -4.02 -3.82 -0.34 0.52 1.36 0.6 -0.0 -1.12 1.89 -0.48 -1.21 -1.12 -0.84 1.26 1.73 0.39 0.95 0.26 0.6 -0.13 -0.73 -0.09 -0.14 0.01 0.7
3.24 - - - - - - - - - - - - - - - 3.99 - - - - - - - - - -1.13 2.24 - 1.32 - - -
- - - -9.89 -9.61 - -7.02 -9.14 - - - 0.1 1.97 1.32 - -7.37 2.84 - - - - 3.0 0.98 -1.49 0.57 -1.27 0.06 -0.64 -0.56 0.07 0.07 0.57 -2.76
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - - - - - - -2.98 -3.06 - - 0.45 2.09 - - - 3.38 - - - - -2.23 3.97 - - - -0.31 - - - - - -
-2.04 -1.85 -3.8 - -3.95 -3.05 -0.55 -4.32 -4.01 -4.9 -2.77 0.22 1.76 -1.89 - - 2.73 - - - - 0.74 1.95 2.51 2.4 -0.47 0.89 -5.4 -2.47 -3.01 -3.19 -1.93 -
- - 3.45 - - - - - - - - - - - - - 4.47 - - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
-1.69 -1.0 -4.38 -4.37 -3.66 -3.76 -2.84 -5.46 -3.43 - - -0.99 1.48 0.48 -1.24 -6.28 1.04 -2.42 -4.64 - - -0.39 1.25 -5.45 2.42 0.62 0.57 1.08 -0.19 0.98 1.22 1.28 1.6
-1.96 -1.31 - -5.08 -3.15 -3.38 -0.75 -2.87 -1.77 -3.6 -1.26 0.55 0.99 -0.94 -0.4 0.52 1.91 0.15 -1.32 -0.88 -0.47 1.42 -0.05 -1.55 1.03 -0.13 0.26 -0.22 1.05 0.51 1.17 0.39 0.86
- - - - - - - - - 1.33 - - - - 3.77 - 3.39 - - - - - - - - - - - 1.69 - 1.67 - -
-3.35 -1.42 -3.46 -1.16 -1.49 -0.26 -1.52 - -4.28 -0.72 -1.79 0.04 0.29 -1.69 -1.69 0.72 1.8 -1.61 1.22 0.33 0.12 0.08 - - -0.65 -0.28 0.68 1.82 0.94 0.85 1.0 0.82 0.45
-3.41 -1.85 - -5.28 - - 0.21 - - - - -4.03 1.48 1.44 - -1.41 1.94 - - - - 1.85 -1.14 -0.69 -0.81 0.71 0.88 0.3 1.02 2.02 0.58 0.7 1.33
-1.2 -1.7 -1.9 -3.8 -7.87 -6.71 0.77 - -5.58 - -0.43 1.37 2.83 1.73 -1.05 -0.0 2.17 -2.47 -1.72 -1.6 -2.61 2.5 - -1.34 1.76 -8.58 -6.74 - -7.38 - - - -
- - - - - - - - - - - - 1.61 - - -0.23 3.89 - - - -0.21 - 2.54 - - -2.19 0.39 0.36 1.99 - -1.23 -1.3 -
- -2.72 -1.49 - - - 0.61 -1.77 - - - 1.39 -0.4 - - -1.01 3.33 - - - - -2.02 2.86 -0.18 -0.89 1.57 1.44 -2.0 -0.18 -0.96 -2.14 -2.08 -
- - - - - - -0.79 - - - -1.13 -0.32 -0.06 0.69 -1.31 0.18 1.92 0.76 0.86 0.97 0.62 0.04 - 1.64 0.31 1.38 1.35 0.07 -0.38 0.52 -0.12 -0.92 0.06
-2.56 -3.69 -4.49 -6.05 - - 0.61 - - -5.7 -0.79 1.68 2.5 1.69 -0.26 0.2 1.86 -0.67 -0.51 0.3 -0.24 2.81 - -2.0 1.12 -7.24 -8.04 - - - - - -
-4.02 -3.86 -4.26 -3.66 -3.0 -2.8 0.37 -2.57 -1.04 -3.22 -0.0 -0.56 -1.07 -1.26 0.66 1.15 1.65 0.66 0.54 0.0 0.43 -0.11 -0.73 2.39 -0.39 -0.92 -0.68 -1.38 -1.21 0.61 -0.08 -0.37 1.47
- -5.0 - - - - -3.23 -3.52 - - 1.29 -0.31 -2.86 -1.97 2.37 0.23 0.93 2.38 2.27 1.37 2.25 -2.79 -2.32 -3.45 -3.16 -7.07 -4.98 -1.19 -0.97 -1.45 -0.75 -0.61 -1.56
-4.13 -2.08 - - - - -0.71 - - - 1.24 1.32 1.4 1.43 - -1.83 2.24 0.6 -0.09 -3.16 0.2 2.44 0.06 - 2.42 -2.37 -1.08 - -2.3 -3.48 - - -1.41
- - - - - - - - - - - - - - - - 5.04 - - - - - - - - - - - - - - - -
- - -2.56 - - - -2.01 - - - - -1.0 - - 2.18 0.92 3.94 0.67 - - 0.94 1.62 - - - 0.95 -0.15 - - -1.03 -1.21 - -
- - - - 2.33 - - - - - - - - - - - 4.66 - - - - - - - - - 1.44 - - - - - -
-1.2 - - -0.25 - - -0.49 - -0.47 - -0.43 - - - - - 4.71 - - - 0.47 - - 0.28 - - - -0.4 - - - - -
- - - -2.9 - - 1.16 - - - 3.03 0.87 0.39 - - - 2.77 2.41 - - - 0.53 -1.24 1.21 0.5 -1.09 0.19 - - - - - -
- -9.43 - - - - - -6.36 - - 1.93 -3.52 1.15 -7.51 0.2 1.39 3.02 1.75 1.39 1.59 1.2 -1.76 -1.06 -2.21 0.83 -3.46 -1.38 -3.42 -6.41 -4.08 -3.38 -2.72 -4.66
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.