Heatmap: Cluster_327 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- - - - - - - - - - - -1.33 -2.02 - - - -4.38 - - - - -2.39 -3.38 0.41 0.03 -3.81 -3.72 2.92 -1.55 -0.91 2.88 3.74 -1.55
- - - - - - -10.43 - -11.39 - - -5.71 -7.22 -5.76 -3.63 - -6.84 - - -9.9 - -6.49 -7.68 -2.77 - -0.6 -2.35 2.82 -1.15 -1.72 3.49 3.66 -2.52
- - - - - - -8.82 - - - - -6.78 -8.85 -7.51 - - -10.2 - - - - -6.63 -6.63 -2.26 - -0.7 -1.07 3.24 0.76 0.08 2.5 3.66 0.15
-1.48 -0.92 -2.13 -2.31 -2.43 -2.48 0.07 -2.48 -2.59 -2.39 -1.14 -1.19 -2.21 -1.23 -2.42 -2.52 -2.28 -1.77 -1.97 -1.99 -1.88 -1.88 -0.71 -1.29 -3.05 -1.36 -1.51 2.79 1.63 0.13 2.55 2.71 -0.15
- - -0.42 - - - - -1.5 - 0.2 - - - - - - - - - - - - - - - - - 2.2 0.72 1.01 3.11 3.09 2.42
-8.28 -13.26 -7.78 -6.95 -6.4 -9.37 -7.64 -7.17 -6.55 -7.72 -1.38 -6.39 -4.1 -8.6 -0.04 -2.12 -1.95 -1.6 -1.97 -2.99 -2.72 -7.35 -1.27 -3.11 -3.38 -1.8 -2.31 3.1 -1.54 -3.66 3.22 3.41 -3.66
- - - - - - - - - - -0.6 0.45 -1.2 - -0.13 - -0.72 -0.06 -0.58 -2.22 -2.19 -1.07 - -1.38 -0.51 -0.75 0.94 1.83 1.42 0.4 2.21 3.39 -2.07
- -11.05 - - - - -4.93 - - - -8.46 -1.81 -1.58 -1.89 - - -4.24 - - - -9.56 0.09 -0.5 -2.23 -0.04 -0.26 -0.56 3.54 0.21 -2.96 2.41 2.99 0.39
-15.44 -13.9 -14.87 - -14.09 - -2.85 -14.35 -15.73 - -7.13 -4.9 -5.28 -3.77 -5.89 -6.17 -7.51 -8.07 -7.39 -6.36 -7.31 -4.9 -7.4 -2.52 -4.44 -0.48 -1.39 3.27 1.4 0.09 1.65 3.4 2.08
-6.45 -7.84 -5.0 -4.18 -4.67 -2.71 -7.43 -4.14 -4.5 -3.89 -7.79 -6.55 -3.54 -7.66 -0.14 -7.69 -5.45 -7.84 -8.13 -7.48 -7.98 -7.37 -2.22 -3.07 -3.45 -0.42 -0.82 3.09 -1.53 -3.79 3.17 3.55 -3.9
-12.22 -10.67 - - -12.12 -13.12 -5.47 - -11.59 -13.61 -11.63 -5.58 -4.59 -6.94 -2.89 -10.27 -6.88 - - -10.76 -12.05 -6.55 -1.66 -0.44 -6.16 0.08 -0.88 3.1 1.74 0.17 2.82 3.21 -0.55
-10.8 -10.61 - -16.88 -15.9 -15.22 -6.02 -14.36 -14.29 -15.71 -11.25 -6.75 -5.18 -7.54 -9.24 -9.98 -6.49 - -13.0 -13.45 -15.15 -7.42 -1.86 -1.51 -6.77 -0.45 -1.32 3.23 1.58 -0.18 2.98 3.24 -0.92
- - - - - - - - - - -3.33 -4.11 -2.35 -3.02 1.16 -0.67 -4.18 -1.61 -2.55 -2.46 -2.2 -5.91 -2.75 -2.48 -4.06 0.41 -0.43 3.3 -0.18 -2.87 2.69 3.14 -3.16
- - - - -5.71 - -6.04 - -6.99 - -4.95 -1.19 -6.07 -2.9 -4.98 -5.08 -3.71 - - -5.08 -5.05 -0.78 1.09 2.08 - 0.22 -0.18 2.85 0.43 -0.5 2.04 3.21 -0.82
- - - - -6.29 - - - - -6.56 -5.91 -0.31 - -0.86 -4.8 - -5.68 - - -4.41 - -0.37 1.29 2.28 -3.77 0.27 0.07 2.73 0.33 -0.76 1.98 3.03 -1.07
- - - - - - -8.66 - - - -3.64 -5.87 -10.24 -1.04 1.07 -0.9 -1.85 0.18 -2.71 -1.23 -0.27 -2.92 -9.31 -1.73 -7.56 -0.29 -0.47 3.61 -1.52 -2.91 2.45 2.76 -3.52
-4.07 -3.85 -6.2 -7.62 -7.34 -9.55 -0.73 -7.45 -7.44 -7.36 -6.37 -4.15 -4.3 -5.52 0.79 -4.35 -4.96 -5.54 -5.65 -5.38 -4.17 -3.7 -1.49 2.82 -6.64 -0.66 -2.2 2.62 0.17 -0.07 2.43 2.45 1.44
-15.56 -16.38 -13.69 -14.27 -15.47 - -12.87 -14.6 - -10.94 -3.29 -3.78 -2.17 -1.65 0.7 -1.68 -4.73 -2.42 -2.91 -2.54 -2.67 -5.49 -1.91 -2.27 -3.51 -0.14 -0.82 3.22 -0.16 -2.52 2.87 3.28 -2.69
-3.06 -2.91 -4.48 -3.14 -3.66 - - - - - - - -1.84 - - - -1.77 - - - - - - -2.61 -2.32 -1.53 0.11 2.35 - - 2.68 4.18 -1.14
- - - -7.73 -8.96 - -0.43 -3.0 -3.23 - -0.14 -0.72 -2.07 - 1.02 -0.57 -3.31 -4.57 -1.32 -1.07 -1.17 -1.28 0.97 -0.97 -0.58 -0.28 -0.66 1.65 1.0 1.27 2.1 3.09 -0.43
- -1.07 -3.44 - - -1.52 - -1.12 - - - - - - - - -3.14 - - - - - - -0.24 - - - 2.23 1.4 1.76 2.61 3.54 1.12
- - - - - - - - - - -3.57 -3.69 -2.84 -1.52 0.69 -2.02 -4.78 -3.76 -2.13 -2.28 -2.74 -8.67 -1.48 -2.75 -6.49 -0.35 -1.2 3.14 -0.31 -3.85 3.0 3.36 -3.36
- - - - -9.39 - - - - - -2.56 -6.1 -8.17 - 0.26 -1.53 -5.11 -2.49 -3.95 -2.1 -2.2 -7.1 - - - -1.69 -2.42 3.79 -1.95 -3.07 2.5 3.34 -3.94
- - -2.75 - -1.77 - -3.76 - - - -1.04 -1.16 -0.36 - -2.74 - -2.63 - - - - 0.64 -0.05 2.76 -0.7 -0.38 -0.8 2.35 0.32 -0.04 1.44 2.98 0.32
- -9.43 - - -10.04 - -3.22 -8.59 - - -5.87 -1.07 -3.41 -2.78 -0.42 -5.13 -5.15 -4.34 -6.45 -7.83 -5.34 -2.56 -3.08 -4.99 -2.4 -1.88 -2.22 3.34 1.02 0.61 2.88 2.88 0.89
- -9.55 - -9.33 -9.93 - -4.4 - -6.57 - -3.65 -6.05 -0.93 - -1.02 -1.62 -3.85 -4.74 -6.07 -5.13 -3.52 -3.6 -0.21 -4.88 -1.11 -0.59 -0.16 2.97 -2.84 -3.47 2.78 3.72 -2.44
- - - - - - -6.7 - - - - -6.01 -10.15 -9.75 - - -10.58 - - - - -7.45 -8.73 -3.39 -11.03 -2.07 -2.76 3.16 0.74 0.58 2.92 3.55 0.18
-2.91 -2.99 -6.87 -5.12 -6.49 -4.79 -2.68 -4.4 -4.63 - - -4.0 -5.26 - - - -6.33 - - - - - -1.74 -3.48 -4.34 0.92 0.58 2.49 0.97 1.37 2.29 2.74 2.76
- - - - -12.17 - -5.44 - - - -7.77 -3.39 -2.82 -5.12 -9.04 -4.5 -0.04 - -8.42 - -8.01 -3.45 -4.47 -0.0 -2.09 -1.09 -1.55 3.53 -1.79 -3.22 1.05 3.95 -4.45
- - - - - - - - - - - -4.34 - - - - - - - - - -0.38 - -4.59 - -3.08 -5.85 3.41 -0.97 -3.18 3.03 3.58 -0.76
- - - - - - -2.32 - - - - - -0.06 - - - - - - - - -3.82 - - -0.04 -3.64 -3.25 1.33 2.41 1.85 1.74 3.89 0.06
-3.28 -3.06 - - - - -6.91 - - - -2.95 -4.31 -5.39 - -5.89 -2.39 -5.27 - - -4.98 -4.95 -5.29 0.62 - - -2.44 -1.78 3.08 -2.38 -4.19 2.9 3.81 -6.86
-4.16 - - - - - - - - - - -3.43 -4.5 - -3.0 -1.92 -8.33 -1.23 - - -2.48 -4.52 - -3.67 - -0.64 -1.25 3.7 -0.33 -2.38 2.99 3.1 -2.64
- - - - - - - - - - - -2.27 -0.79 - - - -3.53 - - - - -1.48 - 1.32 0.06 -4.41 -4.87 3.03 -0.7 -1.68 2.93 3.47 -1.61
- - - - - - - - - - -3.37 - - -1.19 - - -1.84 - - - - - - 3.29 - -1.42 -3.17 3.01 -0.59 -2.31 2.49 2.88 -
-1.96 -1.62 -2.08 -2.52 -2.93 - -2.34 -8.23 - -4.61 - -3.86 -3.93 - - - -7.39 - - - - -0.73 -2.31 -6.57 - 1.15 -0.19 2.27 -0.89 -0.58 3.11 3.46 0.9
- - - -5.67 - - - -7.78 - -8.03 - -5.35 -7.01 - - - -0.92 - - - - -4.5 -4.73 -5.18 - 0.3 0.4 3.34 -0.04 0.17 2.69 3.2 0.93
-6.78 -6.96 -8.56 -7.78 -8.0 -6.42 -9.91 -7.97 -9.01 -5.97 -5.33 -5.4 -3.85 -3.88 -1.9 -6.3 -7.84 -5.59 -6.31 -4.05 -5.36 -6.67 -0.55 -4.88 -5.12 -1.22 -1.68 2.92 -0.91 -2.72 2.95 3.89 -4.75
-3.24 -2.66 - -3.95 - - -0.32 - - - - 0.49 0.32 -2.16 - - -5.93 - - - - - - - 0.29 -0.66 -0.21 2.64 -2.18 -1.16 2.44 3.17 2.31
-5.86 -4.74 -6.62 -7.25 - - 0.43 - - - -3.02 -2.07 -2.16 -0.04 - -4.63 -3.32 - - -5.64 - 0.35 0.46 -2.87 -5.51 -0.67 -0.82 2.49 1.91 0.97 2.35 2.67 1.62
- - -6.12 -4.51 - - -3.74 - - - - - -2.0 -0.55 0.93 -1.49 -3.55 - -3.75 - -3.78 - -1.52 -3.97 - -0.91 -0.35 1.85 1.59 1.4 2.46 3.6 -0.25
- - - - -8.21 - -6.93 - - - -3.14 -0.42 0.45 -1.91 -5.9 -5.99 -1.28 - - -4.68 - -0.6 1.48 -2.84 0.26 -0.47 0.02 2.33 2.11 1.26 1.95 2.54 1.08
- - - - - - - - - - - -3.05 - -1.63 -2.31 - -7.4 - - - - -0.62 -1.05 -4.88 - -4.92 -5.6 3.73 -4.7 -5.76 2.72 3.49 -
- - - - - - -3.33 - - - -2.86 0.09 1.2 -0.65 -0.45 -2.22 -0.39 - -4.48 -5.55 -5.52 0.2 1.92 -1.9 0.26 -0.16 0.25 2.12 1.75 0.96 1.6 2.12 0.56
- -7.58 - - - - - - - - -8.79 -4.03 -3.91 -3.44 -2.3 -3.83 -1.65 -4.95 - -6.34 - -2.76 - -1.8 - -0.93 -1.62 3.61 0.7 -1.22 2.49 3.42 -2.03
- - -9.94 - - - -6.47 - - - -7.19 - - - -3.89 -6.18 -12.1 -6.02 - -7.51 -5.47 -6.51 -6.53 -5.66 - 0.54 -0.34 3.59 1.53 -1.3 2.77 3.0 -1.17
-1.99 -3.2 -1.91 -1.45 -3.11 -5.44 -1.99 -1.64 -4.11 0.08 - -0.71 -0.93 -0.77 1.1 - -1.58 -4.04 - -5.38 -3.1 0.37 -2.6 -1.7 -0.03 -0.0 0.02 2.21 0.71 0.24 1.34 2.33 2.59
-2.22 -4.26 -3.87 -4.04 -3.57 - -1.32 - - - - - - - - - - - - - - - - - - -1.3 - 2.31 0.17 -1.08 2.95 3.44 2.73
-7.53 -4.96 - - -11.38 -9.21 -2.81 -6.82 -8.86 -8.74 -0.14 -3.71 -2.81 -2.68 1.15 -1.84 -1.02 -0.75 -0.03 -2.24 -0.31 -6.04 -8.58 -3.48 -2.01 0.95 0.05 1.71 1.04 1.33 2.5 1.94 2.4
-1.9 -2.01 -4.76 -2.63 -3.29 -3.35 - -4.04 - - -1.47 -0.62 -0.36 - 1.06 -1.28 -2.28 -1.12 -3.22 - - -1.15 -1.73 -1.86 0.3 -0.43 -0.32 2.0 1.0 -0.06 2.24 3.44 -0.67
-3.31 -1.74 -4.67 -2.25 -3.35 -3.58 -0.01 - -4.34 0.35 - - - -0.75 - -0.39 -6.62 - - - - 0.2 -0.6 2.33 - 0.01 -1.23 2.6 -2.04 -2.9 2.05 3.19 -0.99
- - - - - - - - - - - -2.95 -1.03 - -1.36 -1.03 -3.92 - - - -2.01 -4.04 -3.07 - -2.91 0.32 0.06 3.23 0.58 -0.47 3.07 3.09 -2.85
- -7.77 - - - - -4.15 -8.07 - - - -4.42 -8.3 - - - -6.5 -7.14 - - - -3.47 -4.53 0.58 - -0.7 -0.84 2.92 1.0 1.41 2.94 2.9 1.43
- - - - - - - - - - -5.79 - -0.28 - 1.51 -1.19 -4.14 -2.02 - -3.19 -3.16 - -2.22 - -2.06 -2.33 -1.71 3.37 0.78 -0.12 2.81 2.75 -0.61
- - - - - - - - - - - -3.18 -3.43 -3.73 -3.45 - -1.66 - - - - -2.32 -6.06 -2.14 - -0.99 -1.92 3.64 0.61 -1.57 2.67 3.35 -2.32
- - - - - - -4.54 -8.17 - - -1.96 -6.32 -3.54 -7.32 -2.99 -1.28 -3.85 -1.2 -2.18 -2.28 -1.52 -5.69 -3.27 - -2.47 -3.32 -3.38 3.67 -0.27 -1.95 2.76 3.23 -1.68
-8.1 - -1.9 -3.4 -2.64 -3.48 -6.73 - - - - -1.97 -0.73 -5.71 -1.34 -3.07 -3.18 -1.41 - - - -1.44 -2.4 -2.4 -1.55 -0.41 -1.06 3.14 -0.7 -2.67 3.11 3.24 -1.04
-2.37 -3.08 -3.3 -3.37 -3.06 -3.93 -1.91 -2.92 -2.35 -5.54 -3.46 -2.23 -3.25 -1.46 -2.05 -3.53 -2.5 -3.38 -3.55 -3.43 -3.91 -2.53 -1.88 -0.85 -2.44 0.43 -0.11 2.5 1.14 1.09 2.33 2.85 2.13
-2.4 -2.16 -5.67 -4.27 -4.26 - -2.37 -4.45 -6.53 -2.42 -0.8 -1.81 -3.39 -0.54 1.2 -1.21 -2.06 -3.46 -1.25 -1.52 -0.49 0.04 0.86 -1.47 - -0.82 -0.93 0.87 -0.21 0.87 2.31 3.57 -2.76
-2.82 -0.91 - - - - - - - - - - -2.17 - - - - - - - - -2.02 - - -2.63 -4.11 -4.53 3.71 -0.92 - 3.18 3.16 -
- - - - - - -0.65 -2.89 -4.93 -1.59 -3.9 -1.44 -1.4 -2.52 - - -3.08 -0.75 - - - -0.61 -0.64 - -1.58 -2.4 -1.69 2.76 1.04 1.65 2.61 2.88 1.4
- -10.24 - - - - -4.66 - - - - -7.66 -1.96 -3.9 - - -0.53 - - -10.21 -10.18 -3.35 -3.12 -4.05 -2.96 -0.49 -0.35 3.29 1.05 0.9 2.86 2.92 0.63
- - - - -8.91 - - -8.76 - -7.01 - -9.5 - - - - -10.01 - - - - - -4.61 - -7.45 -4.68 -5.68 3.24 0.15 -1.55 3.48 3.38 -1.46
- - - -6.5 -3.73 - -0.94 -2.74 -1.65 1.18 - 0.28 - -0.72 - - -5.19 - - - - -1.28 - -0.05 - -2.55 -3.23 2.99 -1.92 0.0 1.76 3.6 0.51
- - - - - - - - - - -7.6 -1.84 -3.32 -6.64 -2.14 - -0.42 - -5.34 -5.41 - -0.63 -3.06 -4.19 -2.6 -0.29 -0.53 3.19 -0.55 -0.59 3.19 2.88 1.09
- - - - - - -11.75 - - - - -7.34 -7.85 -9.73 - - -11.19 - - - - -6.72 -8.08 -0.86 -10.69 -1.86 -1.97 3.15 0.59 0.03 2.38 3.83 0.01
- - - - -4.03 - - - - - -1.67 - - - - - - - - - - -1.32 - - -1.67 0.78 0.62 2.32 1.66 1.61 2.63 2.38 2.59
- - - - -6.55 - - - -5.65 - - - - - -2.91 - -5.49 - - - - - -5.36 - - -0.82 -1.28 3.64 -0.44 -2.32 3.32 3.07 -5.22
- -3.57 - -4.33 -6.35 - - -3.27 -4.27 - -3.75 -4.01 -1.15 -2.78 -0.34 -0.22 -5.6 -2.71 -2.03 -0.88 -1.75 -5.69 -2.9 - -0.38 -2.01 -1.28 3.13 1.69 0.4 2.56 2.63 1.09
- - - - - - -8.72 - - - - - -8.78 - - - -9.74 - - - - -9.63 -4.91 -3.07 - -0.44 -1.51 3.09 0.31 -0.52 2.05 4.06 -0.87
- - - - - - -7.98 - - - - - -9.6 - - - -13.06 - - - - - -8.66 -1.62 - -0.77 -0.99 3.06 0.5 0.12 2.61 3.79 -0.22
-1.94 -1.38 -3.62 -3.18 -3.99 -5.21 0.23 -5.15 -4.46 -2.64 -2.16 -1.68 -1.23 0.26 -2.45 -4.13 -3.43 -2.46 -6.65 -3.4 -6.69 -0.2 1.19 -3.07 -3.78 -0.59 -0.7 2.51 1.66 0.45 2.18 2.6 1.29
-5.17 -4.86 -5.14 -7.25 -6.13 -4.61 - -6.23 -6.39 - 0.55 -3.15 -2.46 -3.14 -0.21 -0.69 -2.16 -0.93 -2.91 -2.75 -2.53 -3.84 -0.83 - -1.43 -7.82 -6.21 3.22 1.01 0.25 2.86 2.66 0.21
-3.34 -2.11 -7.16 -8.52 -9.03 -5.73 0.93 -6.44 - - -6.56 -1.12 -0.94 0.12 - -5.03 -3.73 -5.52 - - - 0.86 0.46 -1.78 -4.12 -0.88 -1.03 2.43 1.75 0.82 2.19 2.56 1.57
- - - - - - -4.77 -9.86 - - -4.3 -2.49 -2.56 -2.21 - -5.39 -0.6 -4.84 -7.04 - -7.07 -2.5 0.17 -1.05 -1.89 -0.55 0.51 3.23 -0.47 -0.76 2.0 3.18 1.89
-5.48 -5.35 - - -9.98 - -4.11 -9.68 - - -5.29 -4.61 -5.39 -5.77 -7.77 -7.86 -7.16 -6.7 - - -6.83 -2.75 -3.35 0.8 -6.73 -1.01 -1.17 2.96 0.96 1.36 2.84 2.89 1.54
- - - - - -3.22 - - -3.91 -4.7 - -0.45 -5.17 -4.08 - - -9.25 - - - - -2.1 -4.21 -4.34 -4.05 -0.91 -0.79 3.37 0.92 -0.24 2.77 3.24 0.17
-0.2 -5.1 -1.97 - -3.87 -0.26 -0.46 - - - - -1.43 -1.92 - - - -1.61 - - - - 0.04 - -0.09 0.2 -2.93 -1.67 2.41 0.33 0.33 1.81 3.0 2.67
- -6.12 - - - - - -5.55 -6.27 -7.02 -4.37 - - - -4.12 -6.67 -6.19 - -4.15 -4.22 - -7.68 -2.58 - - -1.01 -1.69 3.67 -1.57 -2.96 3.23 3.17 -3.15
-6.03 -3.5 - - - - -4.36 - - - - -2.08 - -1.99 -3.99 -5.41 -8.81 -3.92 - - - -2.35 -3.12 -4.25 -5.28 0.26 -0.07 3.81 -2.78 -5.03 2.93 2.95 -2.75
-4.69 -5.97 - - -7.74 - -2.36 - - - -4.58 -3.63 -3.69 -4.16 -2.33 -5.39 -1.49 -3.08 - - -5.36 -2.98 -1.44 2.28 -3.58 -1.38 -1.86 2.13 1.0 0.61 2.76 3.13 1.2
- - - - - - -3.31 - - - - - - -2.25 - - -1.23 - - - - -2.13 -2.37 - - -0.07 -0.02 2.35 1.9 2.1 2.16 2.43 2.8
-5.87 -5.87 -7.13 -7.26 -4.95 -7.96 -3.47 -7.65 -7.22 - -4.63 -0.85 -2.82 -4.37 0.46 -4.46 -4.5 -3.79 -6.83 -6.89 -5.77 -2.13 -3.09 -4.03 -1.27 -2.4 -3.2 3.25 0.98 0.64 2.78 2.93 0.82
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.