Heatmap: Cluster_445 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.67 -0.39 1.23 1.28 1.9 1.95 0.16 -0.05 0.25 -0.14 -1.31 0.13 -1.85 -1.21 -1.04 -1.66 -0.65 -1.0 -1.73 -1.86 -1.8 0.2 -1.12 -1.91 -0.58 -0.45 -0.54 -0.52 -0.14 0.1 -0.26 -0.71 0.04
1.97 1.69 2.42 2.31 2.51 1.38 1.98 0.14 -1.21 -1.21 -4.76 -1.0 -3.71 -3.47 - - -2.03 - - - - -5.81 - - -1.76 -5.01 -3.46 - - - - - -
0.97 0.25 1.67 1.55 1.75 1.98 0.97 0.9 0.78 0.84 -1.27 0.47 -0.64 -0.09 -0.5 -1.25 -2.43 -1.41 -1.49 -1.51 -1.2 -0.07 -7.57 -0.92 0.28 -4.12 -3.6 -7.12 -7.12 -6.47 -6.77 -6.95 -6.29
0.78 0.15 1.28 0.89 1.31 1.1 -0.08 0.92 0.64 0.24 -0.04 -0.57 -0.91 -0.32 0.15 -0.19 -0.7 0.51 -0.52 -0.12 -0.15 -0.48 -0.74 -0.14 -0.69 -1.16 -1.07 -1.55 -1.31 -1.21 -1.3 -1.31 -1.33
0.97 -0.1 2.01 2.29 2.16 2.07 -1.18 1.13 0.27 0.43 -2.77 -2.39 -3.1 -2.64 -1.82 -2.77 -1.57 -2.05 -3.0 -3.39 -2.8 -2.24 -2.49 -2.98 -1.96 -0.87 -0.83 -0.3 -1.27 -1.23 -0.65 -0.76 -0.82
1.3 0.73 1.96 1.55 1.83 1.42 0.14 1.15 1.05 1.01 -5.57 -0.86 -2.11 -0.93 -0.36 -5.3 -1.87 -5.01 -5.98 -4.77 -5.69 -0.26 -1.95 -1.13 -1.73 -0.05 -0.19 -0.77 -1.92 -2.11 -1.24 -1.37 -1.51
1.53 0.99 1.69 1.73 1.73 1.54 1.1 -0.05 -0.3 -0.06 -2.57 -1.55 -2.28 -2.06 -1.86 -2.21 -1.21 -2.7 -2.64 -2.33 -2.61 -1.38 -1.2 -0.87 -1.99 -0.62 -0.58 -0.33 -0.24 -0.62 -0.55 0.05 -0.07
0.56 -0.38 1.3 1.49 1.61 1.8 0.4 0.09 0.15 -0.08 -1.53 -0.33 -1.6 -0.83 -1.58 -1.97 -1.14 -1.51 -1.89 -1.52 -1.64 -0.39 -0.78 -1.27 -0.57 -0.55 -0.65 0.67 -0.09 -0.26 0.2 -0.16 -0.03
0.61 0.51 1.15 1.04 1.34 1.38 0.44 0.5 0.43 -0.39 -1.38 -0.41 -0.42 -0.51 -0.73 -1.37 -0.61 -1.17 -1.28 -1.46 -1.92 -0.1 0.28 -0.04 0.18 -0.89 -0.9 -0.47 0.09 -0.28 -0.54 -0.79 -0.24
-0.05 -3.12 2.62 2.38 3.39 2.63 0.62 -0.37 -1.84 -2.6 -7.9 -1.35 -3.99 -2.55 - -8.61 -3.39 - - - - -2.71 -5.98 -6.19 -3.41 -4.44 -3.84 -8.56 -9.01 -9.08 -9.7 -8.58 -9.48
1.58 0.53 1.93 1.52 1.88 1.38 1.37 1.64 0.82 0.71 -5.08 -1.23 -1.75 -3.28 -4.84 -4.96 -1.4 -6.65 -6.29 -7.44 -6.57 -0.68 -1.71 -2.0 -1.35 -1.13 -0.96 -1.01 -1.41 -1.32 -1.31 -1.71 -0.72
-1.96 -5.99 1.94 2.01 2.79 1.72 -0.4 -0.08 -1.99 -0.58 -1.04 -3.29 -4.02 -4.18 0.09 -0.15 -3.31 -0.94 -0.88 -0.87 -0.68 -3.8 -5.81 -4.02 -3.02 -1.47 -1.71 1.11 -2.02 -2.13 0.5 0.7 -1.21
1.25 0.61 1.86 1.6 1.8 1.57 -0.07 1.63 0.99 0.52 -2.27 -1.48 -1.58 -1.93 -2.13 -2.3 -0.64 -2.27 -2.54 -2.69 -2.47 -1.04 -1.21 -2.06 -1.17 -0.96 -0.78 -0.78 -1.16 -1.25 -0.84 -1.17 -1.28
0.89 -0.18 1.54 1.62 1.75 1.38 0.47 -0.43 -0.69 -0.17 -1.49 -0.54 -0.99 -1.34 -0.54 -1.23 -0.77 -1.75 -1.28 -1.22 -1.13 -0.79 -0.77 -0.32 -0.65 -0.69 -0.75 -0.49 0.06 0.23 -0.44 -0.43 0.29
0.64 -0.22 1.09 0.95 1.13 0.92 0.02 0.7 -0.01 -0.07 -0.13 -0.95 -0.81 -1.01 -1.05 -0.79 -0.43 -0.07 -0.07 -0.43 -0.13 -0.33 -0.87 -0.64 -0.35 -0.59 -0.61 0.49 -0.17 -0.46 0.17 0.07 -0.51
1.36 0.36 1.9 1.46 1.87 1.09 0.28 1.01 0.36 0.15 -0.9 -0.61 -0.4 -1.36 -1.17 -1.35 -0.75 -1.22 -1.43 -1.17 -1.03 -0.43 -0.6 -1.48 -0.26 -0.75 -0.65 -1.77 -1.62 -1.37 -1.97 -1.91 -1.26
0.66 -0.46 1.97 1.95 2.12 2.04 0.13 1.1 0.13 -0.03 -2.98 -1.25 -0.87 -1.64 -1.82 -1.68 -1.6 -2.33 -3.26 -3.48 -2.99 -0.86 -1.4 0.2 -0.76 -1.2 -1.01 -0.64 -1.71 -1.86 -1.04 -1.65 -0.67
1.42 1.17 1.96 1.79 1.45 1.43 -0.24 0.69 0.14 -0.04 -2.06 -1.45 -1.64 -1.25 -1.53 -2.79 -1.1 -1.64 -2.21 -2.14 -1.92 -1.14 -0.96 -1.86 -1.14 -0.7 -0.72 -0.29 -0.24 -0.46 -0.44 -0.55 -0.55
0.38 0.14 1.35 2.02 1.77 2.24 -0.55 0.69 0.35 0.9 -2.02 -1.4 -2.53 -0.91 -0.81 -1.26 -1.79 -1.72 -1.72 -1.74 -1.49 -1.59 -2.08 -1.3 -1.51 -1.1 -1.24 -0.19 -0.49 -0.27 -0.41 -0.56 -1.03
0.79 0.39 1.22 1.11 1.4 1.02 0.11 1.08 0.66 0.29 -0.83 -0.23 -0.79 0.39 -0.8 -1.05 -0.34 -0.36 -1.23 -0.99 -1.03 0.09 -0.3 -1.09 -0.18 -1.08 -0.9 -0.81 -0.69 -0.94 -1.15 -1.01 -0.8
0.72 0.03 1.5 1.72 1.88 1.7 0.0 1.1 0.31 0.94 -1.84 -0.43 -0.6 -0.59 -1.76 -1.71 -1.09 -1.41 -2.03 -1.83 -1.88 -0.1 -1.31 -1.38 -0.51 -1.06 -0.81 -1.24 -0.58 -0.9 -1.48 -1.47 -0.84
1.65 0.24 2.25 1.94 1.91 2.01 0.43 0.64 0.01 1.29 -2.99 0.62 -3.81 -0.47 -2.36 -5.53 -1.48 -5.99 -5.1 -5.16 -4.31 0.23 -2.77 -0.97 -2.06 -2.1 -1.02 - - - - - -
1.1 0.24 1.43 1.09 1.28 1.07 0.15 0.61 0.14 0.68 -0.64 -0.17 -0.05 -0.33 -0.74 -0.24 -0.97 -0.88 -0.92 -0.87 -0.98 -0.39 -0.51 -0.23 -0.09 -0.84 -0.8 -1.07 -0.94 -0.67 -0.95 -1.0 -0.8
0.15 -0.72 1.12 1.37 1.66 1.3 0.15 0.58 0.19 0.16 -1.96 -0.28 -0.55 -0.45 -0.67 -1.9 -1.04 -1.94 -2.15 -2.24 -2.28 0.23 -1.18 -0.12 -0.52 0.14 0.15 0.05 0.12 0.09 -0.15 -0.48 0.04
-0.63 -3.79 1.66 1.9 2.93 1.69 0.68 0.56 0.28 -0.16 - -0.55 -1.06 -2.39 0.02 - -0.49 -4.64 - -3.8 -3.77 -0.12 -0.41 1.48 -0.21 -2.49 -1.83 - -4.25 -3.15 -4.8 - -3.68
0.72 0.03 1.62 1.78 1.59 1.41 0.56 0.98 0.31 0.35 -2.1 -0.54 -1.47 -0.58 -0.52 -1.74 -0.99 -1.67 -2.08 -2.23 -1.94 -0.51 -0.78 -0.28 -0.93 -1.06 -0.99 -0.18 -1.02 -1.1 -0.51 -0.87 0.01
0.61 -0.43 1.55 1.47 1.22 1.37 0.22 0.39 -0.09 0.16 -0.79 0.05 -0.94 -0.22 0.17 -0.45 -0.73 -0.51 -0.71 -1.13 -0.74 -0.18 -0.93 -1.07 -0.57 -0.86 -0.75 -0.5 -0.4 -0.71 -0.59 -0.51 -0.72
0.86 -1.22 1.57 1.61 1.67 1.37 -0.41 1.16 0.26 0.13 -0.07 -1.68 -0.5 -2.93 0.28 0.68 -1.23 0.37 0.05 -0.66 0.16 -1.84 -3.02 -1.94 -0.16 -1.94 -1.7 -1.31 -1.38 -1.69 -1.61 -1.46 -1.49
-0.31 -5.58 2.75 2.76 3.34 2.58 0.41 -6.83 -6.66 -8.81 -12.63 -1.92 -4.27 -6.36 - - -3.98 -9.87 -11.56 -11.62 - -5.18 -4.55 -1.12 -3.68 -3.77 -2.87 - -10.29 -10.52 - - -5.3
1.41 0.61 1.71 1.15 1.63 1.09 0.02 0.98 0.63 0.3 -1.2 -0.77 0.07 -1.13 -1.14 -1.06 -0.79 -1.55 -1.49 -1.33 -1.3 0.46 -0.98 -0.07 0.34 -1.15 -1.16 -1.76 -1.72 -1.52 -1.81 -2.02 -1.69
0.82 -0.12 1.38 0.83 1.27 0.75 0.61 1.18 0.63 -0.15 -1.43 -0.64 0.13 -0.33 -0.38 -1.08 -1.23 -0.93 -1.22 -0.89 -1.17 0.18 0.1 0.06 -0.45 -0.67 -0.7 0.09 -1.01 -1.11 -0.53 -0.97 -0.62
1.16 0.03 1.87 2.28 2.39 2.12 1.61 0.41 0.41 0.0 -3.55 -0.23 -0.47 -2.85 -5.76 -3.11 -1.62 -3.23 -3.79 -4.63 -5.09 -0.11 -3.3 -6.6 -0.36 -2.2 -1.78 -6.8 -7.27 - -7.56 -9.17 -4.23
1.4 0.53 1.98 1.9 1.51 1.09 -0.89 0.34 -0.09 0.19 -0.1 -1.86 -3.06 -1.23 -1.62 -1.19 -1.98 -0.61 -1.39 -1.39 -0.77 -1.53 -2.08 -2.27 -1.54 -1.82 -1.47 0.02 -0.13 -0.31 0.13 0.06 -0.08
0.48 -0.58 1.24 1.33 1.89 2.01 0.78 0.34 0.54 -0.29 -1.44 -0.1 -0.47 -0.88 -1.1 -1.79 -1.49 -1.41 -1.87 -1.44 -1.52 0.03 -0.76 0.19 -0.41 -1.2 -1.22 -0.06 -0.98 -1.2 -0.51 -0.98 -0.83
-0.01 -0.59 1.0 1.42 1.29 1.65 0.1 0.41 0.35 0.64 -0.17 0.04 -1.37 0.08 0.11 0.2 -0.91 -0.12 -0.09 0.11 0.05 -0.59 -1.8 -1.95 -0.57 -0.51 -0.33 -1.64 -1.34 -1.04 -1.61 -1.53 -1.01
0.02 -2.74 2.49 2.7 2.74 2.15 -0.49 1.95 0.52 0.97 -7.06 -2.15 -5.36 -7.48 -6.8 -7.19 -6.24 -8.4 -7.51 -7.89 -7.54 -4.2 -6.53 -5.56 -5.18 -6.45 -5.38 -5.58 -5.06 -4.88 -5.73 -5.93 -4.59
0.89 -0.15 1.43 1.43 1.89 1.45 -0.29 1.46 1.03 0.93 -3.29 -2.23 -1.92 -1.56 -2.82 -2.78 -1.07 -2.3 -2.68 -2.57 -2.54 -1.16 -1.56 -0.77 -1.28 -0.74 -0.76 -0.13 -0.18 -0.18 0.0 0.16 -0.45
0.64 -0.12 1.49 1.48 1.53 1.79 -0.66 0.5 0.5 0.15 -1.01 -1.0 -1.96 -0.84 -0.7 -1.21 -0.65 -0.52 -1.04 -1.36 -0.96 -1.16 -1.85 -1.98 -1.19 -0.49 -0.46 -0.18 -0.06 -0.14 -0.26 -0.15 0.1
0.84 0.39 1.1 0.86 1.15 1.42 -0.29 0.89 0.89 0.13 -0.9 0.55 -1.0 0.01 0.02 -0.79 -0.33 -0.49 -1.21 -1.43 -1.05 0.23 -0.53 -0.62 0.04 -0.79 -0.56 -0.8 -1.42 -1.34 -1.08 -1.15 -1.09
0.76 0.36 1.08 0.97 1.19 1.11 0.41 0.39 0.37 0.48 -0.95 0.22 -0.25 -0.01 -0.41 -0.68 -0.77 -0.86 -1.13 -0.73 -1.06 0.12 -0.34 -0.3 -0.07 -0.28 -0.34 -1.04 -0.55 -0.71 -1.1 -1.16 -0.59
1.27 0.49 1.96 1.38 1.56 1.1 -0.78 1.37 0.6 0.5 -1.45 -1.3 -1.67 -1.93 -0.36 -2.14 -0.73 -0.73 -1.67 -1.27 -1.24 -0.58 -1.49 -1.75 -0.91 -0.88 -0.86 -0.82 -0.54 -0.34 -0.85 -0.87 -0.51
0.35 -0.51 0.51 0.53 1.5 1.17 0.5 0.38 0.16 -0.92 -0.45 -0.33 -1.26 -0.05 0.74 -0.44 -1.28 0.0 -0.6 -0.41 -0.63 0.15 -0.65 -0.14 -0.47 -0.41 -0.45 -0.08 -0.22 -0.36 -0.22 -0.48 -0.17
0.64 -0.71 2.1 2.23 2.39 2.36 0.88 1.15 0.27 0.27 -3.62 -1.41 -0.27 -2.39 -3.95 -5.75 -0.31 -4.17 -5.55 -5.76 -4.11 -0.43 -3.78 -1.37 -0.28 -4.46 -3.33 -3.97 -5.47 -7.32 -6.24 -5.69 -2.3
0.53 -0.3 1.25 1.49 1.47 1.5 0.53 0.21 -0.15 -0.04 -1.11 0.13 -1.28 -0.24 -1.35 -1.16 -0.5 -0.65 -1.12 -1.11 -1.07 -0.42 -1.2 -1.11 -0.52 -0.35 -0.19 -0.47 -0.34 -0.04 -0.42 -0.46 0.17
1.21 0.26 1.44 0.95 1.11 0.8 0.34 0.84 0.36 0.69 -1.04 -0.5 -1.09 -0.76 -0.79 -1.36 -1.17 -1.27 -1.3 -1.41 -1.35 -0.3 -0.4 -0.54 -0.63 -0.75 -0.69 -0.27 0.1 -0.08 -0.12 -0.23 0.0
-0.26 -5.26 2.74 2.6 3.38 2.75 0.46 -5.59 -5.66 -7.07 - -2.32 -4.79 -7.13 - - -4.59 - - - - -5.06 -5.51 -1.81 -3.97 -4.52 -3.85 - -11.0 - - - -6.09
1.42 0.28 1.9 1.73 2.02 1.57 -0.43 1.31 0.69 -0.08 -2.11 -1.94 -1.77 -2.41 -0.69 -2.11 -0.92 -1.35 -2.15 -2.6 -2.19 -1.36 -1.58 -1.99 -0.87 -1.24 -1.09 -0.67 -0.76 -0.87 -0.66 -0.94 -0.86
0.19 -0.12 0.93 1.21 1.28 1.53 0.02 -0.12 -0.09 -0.13 -0.54 -0.1 -0.94 -0.37 0.12 -0.6 -0.78 -0.33 -0.64 -0.61 -0.62 -0.09 -1.13 -0.97 -0.5 -0.37 -0.33 -0.09 -0.1 -0.11 -0.22 -0.2 -0.11
0.72 -0.7 1.66 1.62 1.84 1.72 0.13 0.5 -0.17 -0.34 -2.36 -0.96 -1.12 -1.46 -0.64 -1.95 -1.04 -2.58 -2.6 -2.59 -2.51 -0.53 -0.6 -0.99 -0.58 -0.65 -0.66 0.69 -0.37 -0.62 0.33 0.01 -0.45
1.25 0.24 1.76 1.47 1.87 1.37 0.51 0.88 0.33 -0.29 -1.7 -0.84 -1.16 -0.68 -1.0 -1.61 -0.14 -1.7 -1.73 -1.61 -1.88 -0.66 -0.87 -0.97 -0.59 -1.11 -0.99 -0.78 -0.74 -0.85 -0.81 -0.8 -0.76
-0.09 -0.87 0.83 1.1 1.61 1.15 0.5 0.38 -0.67 -0.74 -0.79 -0.04 -0.07 -0.03 -0.44 -0.49 0.02 0.11 -1.16 -0.45 -0.96 -0.34 -0.53 -1.59 0.83 -0.16 -0.19 -0.44 -0.64 -0.74 -0.45 -0.16 -0.58
1.16 0.13 1.68 1.45 1.54 1.83 0.01 0.93 1.09 0.22 -1.14 -0.88 -1.6 -0.48 -1.44 -1.54 -1.09 -1.0 -1.67 -1.73 -1.67 -0.73 -0.91 -1.61 -0.64 -1.38 -1.27 -0.86 -0.7 -0.72 -0.65 -0.75 -0.99
1.4 0.94 1.73 1.77 1.94 1.61 0.1 0.6 0.38 0.03 -1.77 -1.49 -2.12 -1.08 -2.32 -1.77 -0.49 -1.22 -1.73 -2.39 -2.29 -1.69 -1.25 -2.59 -0.63 -0.72 -0.6 -1.02 -0.64 -0.59 -0.99 -1.35 -0.42

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.