Heatmap: Cluster_495 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.57 0.64 -0.7 -1.52 -1.65 -2.18 1.42 0.01 -0.65 -0.78 -0.09 0.78 0.4 -0.11 -1.49 -0.15 0.12 -0.35 -0.3 -0.11 -0.31 0.18 0.24 0.75 0.7 0.1 0.31 -0.5 -0.31 -0.06 -1.42 -0.68 0.65
0.74 0.85 0.07 0.49 0.56 1.65 0.51 0.18 0.63 0.32 -0.87 -0.06 -1.14 0.05 -0.77 -0.67 -1.16 -1.45 -1.44 -1.66 -1.53 -0.08 -0.0 -1.54 -0.86 -0.84 -1.21 -0.6 0.51 0.31 -0.59 -0.86 1.41
0.12 0.54 -0.88 -2.0 -5.81 -6.67 2.49 -6.92 -9.7 -7.71 -6.24 1.38 -1.75 -0.41 -5.36 - -2.88 - - -9.12 -8.35 0.03 2.07 -3.34 1.21 0.46 0.33 -0.11 1.57 1.03 -1.12 -1.57 1.67
0.28 0.2 -0.29 -0.43 -0.26 0.17 0.14 -0.12 -0.35 -0.52 -0.03 -0.34 0.18 0.17 -0.66 -0.06 0.06 -0.0 -0.68 -0.93 -0.42 -0.08 -0.14 0.49 -0.15 -0.1 0.01 0.31 0.64 0.51 0.18 0.18 0.55
0.55 0.58 -0.11 -0.29 0.07 0.41 1.09 -0.3 -0.3 -0.16 -0.62 -0.05 -0.54 -1.15 -0.93 -0.71 0.44 -0.42 -1.12 -1.13 -0.99 -0.49 -0.51 0.17 -0.11 -0.17 0.15 0.28 0.54 0.66 0.29 0.13 0.86
0.13 0.23 -0.34 -0.09 -0.32 1.0 2.23 -1.15 -0.69 -0.06 -3.4 0.83 -1.18 0.43 -7.44 -4.6 -0.0 -5.78 -6.98 -5.86 -6.82 0.46 -0.34 -2.12 0.18 0.77 1.44 -1.9 -0.22 1.15 -1.51 -1.4 1.42
0.36 0.23 0.17 0.27 -0.11 0.19 0.06 0.53 0.29 0.43 -0.59 -0.47 -0.8 0.82 -0.52 -0.5 -0.11 -0.24 -0.54 -0.64 -0.49 -0.13 -0.86 -0.23 -0.87 -0.18 -0.26 0.26 0.33 0.31 0.17 0.13 0.72
-0.53 -0.8 -0.23 0.18 -0.33 0.8 1.27 -1.14 -1.26 0.28 -1.12 0.42 -0.59 -1.67 0.51 -1.58 -0.11 -1.66 -1.8 -1.63 -1.42 -0.32 -0.82 -0.46 -0.26 0.63 1.12 0.18 0.45 1.05 0.37 0.51 1.03
0.34 0.14 0.11 0.01 0.13 0.35 0.99 -0.13 -0.42 -0.69 -2.2 0.39 0.27 0.25 -2.03 -2.42 0.2 -2.12 -2.67 -2.2 -2.22 1.2 0.84 -0.84 0.15 0.26 0.62 -0.3 0.31 0.78 0.11 -0.38 0.56
1.29 1.08 0.49 -0.5 -0.79 0.44 2.32 -2.22 -1.46 -4.5 -4.17 -0.51 -0.72 -1.83 - - -0.97 - - - - 0.19 0.5 1.22 1.41 -0.08 0.37 -3.63 0.22 1.94 -2.16 -3.87 0.58
1.12 0.44 -0.44 -1.81 -2.16 -2.37 2.4 -0.05 0.3 -1.43 -1.18 0.26 -1.36 -1.67 -0.09 -1.26 0.04 -2.52 -1.13 -1.99 -1.49 -0.72 -0.61 -2.5 0.48 0.68 1.05 0.16 0.82 0.57 0.09 -0.28 0.57
-0.56 -0.73 -0.48 -0.35 0.31 -0.56 0.83 0.84 -0.37 0.35 -1.27 -0.25 -0.98 0.07 -0.25 -0.88 -0.04 -1.01 -1.06 -1.01 -0.83 0.08 -0.85 -0.8 -0.41 0.31 0.42 0.82 0.87 0.5 0.51 0.3 1.19
0.44 0.5 -0.91 -1.23 -1.27 -0.94 1.32 -0.83 -0.64 -1.48 -1.1 0.72 0.81 0.2 -0.34 -0.49 0.04 -0.87 -1.06 -1.36 -0.9 0.73 0.27 -0.53 0.42 0.07 0.39 0.18 0.84 0.39 0.03 -0.29 0.54
-0.16 -0.34 0.06 -0.29 -0.16 -0.17 0.9 -0.38 -0.64 -0.67 -0.2 0.28 -0.04 0.38 -0.25 -0.05 0.07 -0.13 -0.33 -0.12 -0.27 0.49 0.24 0.25 0.11 -0.3 -0.04 -0.12 0.25 0.34 -0.14 -0.24 0.39
-0.47 -0.23 -0.55 -0.32 -0.67 0.63 0.6 -0.46 -0.82 0.2 -0.31 0.52 -0.03 -0.81 -0.82 -0.86 0.61 -0.41 -0.43 -0.0 -0.18 -0.18 -0.14 -1.6 0.3 0.69 0.9 -0.91 0.33 1.15 -0.23 -0.39 0.64
1.38 0.82 0.53 -0.41 -0.12 0.29 1.64 -0.25 -0.16 -0.71 -1.14 -0.19 0.17 -0.96 -0.9 -1.44 0.4 -1.66 -0.92 -1.57 -0.88 0.38 0.23 -0.82 0.36 -0.2 -0.14 -0.02 0.12 0.03 0.07 0.0 -0.61
-0.04 0.08 -0.45 -0.34 -0.53 -0.23 0.57 -0.71 -0.65 -0.83 -0.17 0.19 0.26 -0.21 -0.1 -0.15 0.27 -0.44 -0.37 -0.56 -0.46 0.24 0.3 0.42 0.81 0.13 0.34 0.16 0.06 0.25 0.19 -0.01 0.26
0.26 0.39 -0.1 0.1 -0.15 1.15 0.47 -0.36 0.51 0.05 -1.72 0.22 0.11 0.58 -0.86 -1.17 -0.21 -0.96 -1.77 -0.89 -1.42 0.47 0.36 -0.97 -0.51 -0.36 -0.02 0.04 0.12 0.27 0.11 -0.29 1.18
-0.06 -0.35 -0.13 -0.11 0.05 0.01 0.42 -0.01 -0.2 -0.27 -0.42 0.35 -0.09 0.18 -0.54 -0.36 -0.18 -0.21 -0.23 -0.27 -0.29 0.37 -0.03 -0.07 -0.08 0.06 0.19 0.0 0.59 0.57 -0.03 -0.17 0.41
-0.19 -0.51 0.09 0.31 0.14 0.37 0.73 0.1 -0.84 -0.66 -0.79 -0.21 0.02 -0.7 0.27 -0.76 0.31 -1.12 -1.27 -0.83 -1.02 0.1 -0.02 0.01 -0.11 0.49 0.47 0.42 0.75 0.45 0.2 0.27 0.31
0.33 0.2 0.12 -0.37 -0.12 -0.45 1.38 -0.58 -0.85 -1.15 -0.77 -0.02 0.15 -0.16 0.2 0.14 -0.02 -0.5 -0.82 -1.09 -0.75 0.16 0.11 0.98 -0.2 0.2 0.16 0.06 0.13 0.1 -0.1 -0.08 0.33
-0.67 - - - - -2.35 1.39 - - - 0.09 2.3 0.87 -0.63 1.11 -0.31 1.18 - 0.75 - - -1.19 1.83 -2.47 1.82 1.23 2.05 - - - - - -
1.3 0.32 0.28 -0.81 -1.86 -1.44 2.42 -1.68 -1.28 -2.88 -0.21 -0.93 -0.38 -4.11 -1.13 -1.42 -0.99 -0.45 -0.54 -1.68 -0.38 -1.91 -1.27 0.28 -1.67 0.41 0.32 0.06 1.04 1.09 0.4 0.13 1.13
-1.08 -1.21 -1.34 -1.15 -2.13 -0.84 2.3 -0.51 -1.31 -0.56 -1.4 0.66 -0.84 0.29 -0.91 -0.55 0.35 -0.37 -1.16 -0.59 -0.67 0.39 -1.14 -1.73 0.58 0.6 1.59 -1.13 0.96 0.6 -0.75 -1.49 1.06
1.88 1.61 0.59 0.14 -0.69 -1.05 3.39 -4.71 -3.83 - - -1.87 -1.75 -1.05 - - -1.94 - - - - -0.84 - - - -0.76 -0.52 -3.43 1.26 1.04 -1.02 -1.72 1.81
0.6 0.5 0.52 0.38 0.11 -0.11 0.44 -0.28 -0.53 -1.05 -2.23 -0.32 0.53 -0.25 -1.22 -1.26 0.1 -2.43 -2.34 -2.28 -2.26 0.57 0.98 1.32 -0.11 0.53 0.36 0.22 -0.1 -0.02 0.05 0.23 0.11
-1.32 -1.28 -0.92 -0.22 -0.77 0.06 1.27 -1.98 -2.71 -1.23 0.54 1.08 -0.26 -0.29 1.02 0.21 0.67 -0.42 0.53 -0.7 0.38 -0.82 0.63 -0.91 0.77 0.89 1.31 -0.43 -1.34 -1.72 -0.86 -0.86 -0.78
0.37 0.31 -0.18 -0.65 -0.89 -0.93 1.2 -1.13 -0.66 -3.26 -4.67 -0.79 -0.33 -0.33 -5.95 -4.56 0.42 -5.62 -4.72 -6.79 -4.88 1.26 0.88 1.29 -0.54 0.69 0.3 -0.45 0.24 1.32 -0.85 -1.09 2.33
0.66 0.67 -0.86 -0.73 -0.8 -0.31 0.59 -1.12 -0.87 -0.49 -0.15 0.78 0.36 0.28 0.09 0.16 0.01 -0.93 -0.79 -1.91 -0.82 1.24 0.43 -1.59 0.85 -0.13 0.25 -0.65 0.33 0.16 -0.2 -0.49 0.36
-0.1 0.01 -1.2 -2.01 -2.35 -1.59 1.95 -2.48 -2.22 -2.46 -0.86 1.44 -0.37 0.53 -0.26 -0.84 -0.04 -1.0 -1.33 -1.38 -1.46 0.37 0.43 0.19 -0.1 0.11 0.08 -0.02 0.83 1.06 0.3 -0.27 1.11
0.02 0.57 0.08 -0.12 0.25 0.83 -0.16 0.21 0.72 0.93 -0.73 0.04 0.16 0.27 -1.45 -1.73 -0.49 -1.63 -1.27 -1.91 -1.16 -0.01 0.03 0.09 -0.97 -0.2 -0.27 0.16 0.88 0.66 -0.26 -0.31 0.75
0.03 -0.05 -0.4 -0.65 -0.65 -0.6 0.65 -0.77 -0.87 -1.27 0.1 0.31 -0.38 -0.2 -0.4 0.14 0.25 -0.12 -0.08 -0.03 -0.08 -0.03 -0.01 1.36 0.37 0.18 0.37 -0.05 -0.2 0.12 -0.15 -0.12 0.48
0.21 -0.22 -0.11 -0.22 0.0 -0.49 0.94 -0.2 -0.81 -0.93 -0.37 -0.18 0.34 0.55 0.05 0.0 0.13 -0.37 -0.85 -0.49 -0.56 0.3 0.22 0.12 0.26 -0.29 -0.04 0.01 0.42 0.39 -0.06 -0.18 0.5
1.94 2.24 -0.42 -1.87 -3.97 -1.9 0.79 -2.06 -0.6 - - -0.94 0.43 -0.94 - - 1.11 - - - -4.22 0.1 1.2 -1.54 -1.06 0.4 1.15 -0.79 0.27 1.27 -0.67 0.02 1.19
0.46 0.3 -0.42 -0.54 -0.72 0.39 0.81 -1.2 -0.22 -1.39 -1.41 -1.08 0.12 -0.41 -0.6 -0.91 -0.41 -1.56 -1.49 -1.49 -1.55 0.07 0.99 0.89 -0.55 -0.02 0.12 1.01 0.62 0.61 0.91 0.53 0.63
0.87 0.93 -0.27 -0.44 -0.11 0.7 1.12 -0.55 -0.2 -0.94 -1.65 0.23 -0.22 -0.17 -1.07 -1.57 0.02 -2.41 -2.11 -1.91 -2.14 0.39 0.91 0.26 -0.41 -0.03 0.12 -0.12 0.58 0.75 -0.14 -0.23 0.91
-0.02 0.01 0.01 -0.11 -0.29 -0.15 1.37 -1.34 -1.22 -1.38 -1.15 0.47 -0.33 0.6 -1.82 -0.95 -0.03 -1.04 -0.97 -0.99 -1.08 0.8 0.64 -0.15 -0.09 0.15 0.15 0.1 0.24 0.77 0.07 0.08 1.16
0.23 1.7 -0.3 -0.53 -1.07 -1.27 3.04 - - - - 1.18 -0.68 - - - -3.21 - - - - -3.94 0.57 - -1.59 -0.72 0.64 -3.93 0.4 2.68 -2.84 - 1.56
0.98 1.37 -0.42 -0.76 -1.79 -1.13 0.88 -2.19 -2.09 -1.12 -2.15 -0.18 0.18 0.14 -1.73 -2.33 0.4 -1.82 -2.34 -2.47 -2.34 1.01 1.15 -0.5 0.15 -0.25 -0.27 0.51 0.06 0.55 0.81 1.19 0.92
0.48 0.32 -0.63 -0.48 -0.51 -0.11 1.59 -1.8 -1.9 -0.99 -0.54 0.43 -0.55 0.84 -1.09 -0.26 0.11 -0.37 -1.46 -0.63 -0.7 0.69 0.39 -0.21 -0.62 -0.1 0.15 -0.14 0.8 0.6 -0.11 -0.28 0.7
-0.07 -0.69 -0.86 -1.35 -0.93 -0.25 1.16 -0.96 -0.37 -0.56 -0.02 0.99 -0.3 0.9 -1.01 -0.22 -0.02 -0.58 -0.48 -1.07 -0.91 0.66 0.26 0.03 -0.74 0.08 0.19 0.11 0.58 0.78 -0.19 -0.75 1.13
0.19 0.45 -1.1 -1.08 -1.15 -0.16 0.34 -0.34 -0.35 -0.15 -1.07 0.72 0.21 0.94 -1.38 -1.41 0.06 -0.64 -2.03 -2.25 -1.81 0.56 -0.14 -1.83 0.52 0.4 0.48 -0.21 0.34 0.98 -0.39 -0.03 1.77
-0.74 -0.19 -2.21 -1.8 -2.41 -2.1 1.89 -3.16 -3.09 -1.4 -0.75 0.34 -0.42 -0.2 -0.22 -0.12 0.14 -0.36 -0.56 -0.62 -0.54 0.27 0.69 0.05 0.24 0.49 0.57 0.09 0.92 0.99 0.27 -0.02 1.04
0.9 1.0 0.17 0.03 0.07 0.57 1.75 -0.66 -1.06 -1.23 -1.14 -0.47 -0.48 -0.26 -2.93 -1.26 0.15 -1.38 -1.5 -1.88 -1.51 -0.43 0.74 -0.49 0.11 0.05 0.29 0.01 0.07 0.37 -0.1 -0.05 1.07
-0.67 -0.86 -0.19 -0.19 -0.06 -0.22 0.88 -1.26 -1.55 -1.29 -0.11 0.09 0.4 0.61 -0.62 0.11 -0.12 0.39 -0.07 -0.22 -0.34 0.56 0.14 0.43 0.1 -0.6 -0.54 0.19 0.54 0.44 0.45 -0.16 0.36
0.2 1.63 -0.86 -0.93 -1.57 -1.3 2.98 - - -3.77 - 1.76 -0.68 -0.76 - - -3.44 - - - - -0.24 0.55 - -0.2 -0.8 -0.11 -3.16 0.81 2.25 -4.56 - 1.56
0.96 1.0 -0.72 -2.47 -3.16 -3.98 1.57 -1.02 -1.88 -1.98 -2.26 1.0 -0.12 0.15 - -2.94 1.06 -1.9 -3.46 -3.53 -5.5 -1.33 1.01 -3.1 1.28 0.83 1.5 -0.98 1.3 1.15 -1.68 -1.54 0.83
0.96 0.72 0.63 0.1 -0.03 0.07 0.8 -0.13 -0.23 -1.13 -1.21 -0.45 -0.0 -0.35 -0.57 -1.72 -0.5 -1.78 -1.1 -1.6 -1.77 0.12 0.14 1.83 -0.95 0.39 0.46 0.12 0.31 0.05 -0.61 -0.79 0.3
0.28 0.52 -0.14 -0.56 -0.89 0.03 0.41 -0.98 -0.08 -1.69 -1.54 -1.1 -0.69 -1.32 -1.23 -2.12 -0.15 -1.51 -1.66 -1.97 -1.78 -0.37 0.39 -0.01 -0.8 -0.03 0.07 1.41 1.15 1.02 1.41 0.96 1.22
-0.87 -0.47 -1.53 -1.27 -1.52 -0.68 1.13 -2.01 -2.95 -1.71 -0.79 0.24 0.1 -0.17 0.66 -0.45 0.13 -0.24 -0.73 -0.36 -0.24 0.7 0.54 0.82 0.05 0.31 0.33 0.14 0.79 0.76 0.21 0.23 0.75
0.85 1.62 -2.25 -3.15 -4.93 -3.73 2.2 -4.53 -3.73 - -6.09 0.03 1.11 -1.89 - -5.26 0.2 -6.68 -7.53 - -5.34 0.19 0.42 -0.04 -0.44 0.41 -0.16 -1.54 0.53 1.43 -2.29 -2.64 2.82
-0.03 0.64 -1.04 -1.09 -0.77 -0.67 -0.31 -0.95 -1.14 -1.24 -0.13 0.41 0.17 -0.01 -0.08 -0.91 -0.17 -2.06 -1.28 -1.35 -1.23 0.45 -0.56 -0.26 1.02 0.18 0.44 0.46 0.97 1.24 0.13 -0.2 1.5
0.67 1.44 -0.45 -0.92 -4.18 - 3.32 - -0.1 - - -0.76 - - - - -2.93 - - - - - -0.87 - - - - -1.42 1.86 2.11 0.64 -0.54 2.2
-0.28 0.8 -4.39 -3.45 -3.64 - 2.38 -5.77 - -6.29 -1.46 1.56 -0.15 0.57 0.01 0.25 0.55 -1.32 -1.98 -1.0 -1.22 -1.98 0.31 -3.3 -0.04 0.39 0.55 0.55 1.17 0.53 0.31 0.47 -0.14
0.16 -0.26 -0.23 -0.62 -0.08 0.09 0.68 -0.01 0.14 -0.46 -0.63 1.0 0.2 1.04 -0.5 -0.49 -0.29 -0.4 -1.16 -0.81 -1.23 0.55 0.66 0.71 0.11 -0.22 -0.13 -0.37 0.08 0.17 -0.54 -0.7 0.06
0.23 0.14 -0.19 -0.6 -0.42 -0.03 0.99 -0.23 -0.69 -0.47 -0.58 0.85 -0.3 0.96 -0.5 -0.19 -0.27 -0.98 -1.21 -1.13 -1.31 0.34 0.93 0.63 0.16 0.2 0.29 -0.51 0.25 0.2 -0.71 -0.73 0.43
0.22 -0.08 -0.06 -0.26 0.23 0.19 -0.14 0.43 -0.12 0.44 -1.21 -0.05 -0.72 -0.47 0.39 -0.88 -0.62 -0.9 -0.29 -0.18 -0.56 -0.25 -0.1 -0.73 -0.32 0.37 0.3 0.54 0.62 0.38 0.53 0.32 0.51
-0.42 -0.95 -0.17 0.33 -0.04 0.72 1.86 -2.47 -2.68 -0.24 -2.38 1.18 -2.75 0.19 -0.29 -2.38 -0.08 -1.89 -1.35 -2.51 -1.69 -0.98 -0.17 -3.43 -0.34 1.4 2.08 0.0 0.09 -0.19 -0.11 -0.54 0.7
- - -4.19 - -5.71 - - -4.22 - - - 3.26 -0.53 -1.79 - - 1.38 - - - - 2.16 1.26 - 1.42 2.12 2.5 - -2.63 - - - -
-0.46 -0.34 -0.11 -1.37 -1.22 -2.16 1.25 -3.27 -7.25 -1.03 - 0.19 0.15 0.16 - - 0.06 - - - - 1.97 -0.75 -4.91 0.04 0.46 0.47 0.59 0.85 1.28 0.23 0.16 2.52
-0.15 0.2 -0.9 -1.27 -0.97 -0.54 1.5 -1.16 -1.19 -1.17 -0.43 1.37 -0.26 1.42 -1.26 -0.26 -0.58 -0.95 -0.75 -0.89 -0.61 0.74 0.33 -0.82 -0.26 -0.16 0.09 -0.54 0.33 0.67 -0.04 -0.15 0.91
0.3 0.05 -0.48 -1.44 -1.1 -0.71 0.56 -1.33 -1.06 -2.76 0.45 0.23 0.21 -0.16 0.61 0.09 0.04 0.05 0.13 -0.32 -0.14 -0.07 -0.23 0.88 0.01 0.17 0.25 -0.01 -0.06 0.56 -0.11 -0.35 0.94
1.08 1.42 -1.11 -3.01 -3.24 -0.93 2.33 -1.6 -1.93 0.24 -2.73 1.22 -0.42 -3.16 -3.44 -6.7 0.1 -2.54 -4.32 -6.71 - -2.18 0.58 - 0.24 1.25 1.98 -5.22 0.98 1.73 -4.75 -4.86 -0.25
0.56 0.84 -1.58 -3.89 - - 2.72 - - -0.8 - 2.09 -0.42 0.4 - - 0.41 - - - - 1.43 -0.11 0.81 1.71 0.43 0.47 -1.57 -1.13 -0.1 -4.56 -1.55 0.06
0.22 -0.04 0.13 -0.27 -0.22 -0.28 1.16 -0.68 -0.65 -0.85 -0.59 0.04 0.25 0.66 -0.86 -0.41 -0.12 -0.35 -0.72 -0.78 -0.89 0.74 0.62 0.37 -0.09 -0.45 -0.22 0.12 0.3 0.41 0.27 0.0 0.15
0.24 1.39 -1.82 -4.76 -5.54 -5.85 3.59 -7.17 -7.29 - -6.8 0.11 -5.07 -4.69 -6.07 - -1.86 - - - - -1.6 -1.27 -4.0 -1.81 0.88 0.28 -0.32 1.69 1.62 -0.97 -1.3 1.68
0.37 -0.2 -0.26 0.23 -0.23 0.39 2.58 0.78 0.41 -0.86 -0.55 0.41 -1.87 -1.09 -1.6 -0.26 -0.17 -2.14 -4.75 -0.84 -1.97 -1.36 0.44 -1.6 -1.31 0.9 1.14 -1.87 -0.18 0.17 -1.65 -2.11 0.86

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.