Heatmap: Cluster_227 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
1.69 0.45 2.04 1.97 1.52 1.86 1.84 -0.52 0.25 -0.83 -4.49 -0.07 -3.36 -0.3 -3.66 -3.88 -3.31 -4.87 -6.15 -5.21 -7.18 -4.88 0.61 -3.56 -2.04 -3.05 -2.51 -2.15 -0.27 -1.37 -4.3 -8.15 0.96
0.53 0.32 0.43 0.1 0.6 0.43 0.29 0.68 0.45 0.13 -0.61 -0.31 -0.25 0.17 -0.68 -0.77 -0.31 -0.41 -0.96 -0.38 -0.73 0.3 0.15 0.01 -0.48 -0.48 -0.43 -0.08 0.35 0.03 -0.25 -0.34 0.32
0.89 0.71 0.76 0.54 0.66 0.64 -0.04 -0.21 -0.01 0.08 -0.66 -1.04 -1.56 -0.99 0.66 -0.11 -0.31 -0.98 -0.63 -0.49 -0.6 -0.92 -1.71 -0.85 -0.65 -0.31 -0.08 0.61 0.29 0.22 0.59 0.44 -0.0
2.01 0.91 0.94 -0.09 -0.14 -0.4 0.31 1.24 0.56 -0.08 -3.15 -0.13 0.4 -1.23 -1.91 -3.03 0.18 -4.18 -3.74 -4.75 -3.9 1.24 1.43 -3.46 0.98 -1.04 -0.9 -0.25 -3.37 -3.08 -1.41 0.89 -0.72
0.72 0.5 1.03 0.71 0.43 0.11 0.56 0.58 0.17 0.07 -1.63 -0.46 -0.4 -0.6 -0.7 -1.68 0.34 -0.79 -1.63 -1.65 -1.9 -0.03 0.1 -0.09 -0.45 -0.23 -0.1 0.04 0.42 0.36 -0.04 -0.08 0.55
0.95 0.62 1.04 1.1 0.93 0.89 -0.28 -0.01 -0.04 -0.51 -0.84 -0.64 -1.34 -0.61 -0.27 -0.93 0.28 -0.47 -0.91 -1.06 -0.92 -0.75 -0.81 -1.13 -0.75 -0.07 0.09 0.24 0.22 0.15 0.09 0.13 0.2
0.53 0.03 0.84 0.74 0.5 0.1 0.84 0.44 0.07 -0.08 -1.45 0.12 -0.31 -0.3 -0.15 -0.63 0.36 -0.94 -1.26 -1.02 -1.05 0.29 0.29 -0.21 -0.29 -0.19 0.03 -0.33 0.05 0.04 -0.32 -0.38 0.23
0.98 0.81 0.94 0.39 0.58 0.23 0.59 0.33 -0.04 -0.34 -1.66 -0.25 -0.2 -0.26 -0.64 -1.38 0.52 -1.14 -1.69 -2.02 -1.79 0.28 0.59 0.37 -0.24 -0.29 -0.05 -0.17 0.29 -0.14 -0.4 -0.6 0.22
1.58 1.08 1.97 1.18 0.76 -1.55 1.98 1.36 0.05 0.72 - -0.95 0.02 - - - 0.05 - -4.44 - - 0.58 0.47 0.04 0.38 -1.37 -1.23 -3.24 -2.76 -1.94 -4.38 -5.57 0.33
1.27 0.32 1.56 1.27 1.36 2.39 2.42 0.14 -0.28 2.6 -8.34 -1.67 -3.99 -4.11 - - -5.73 - -8.87 -7.93 - -0.36 -4.27 -0.48 -4.59 -4.35 -2.99 -5.85 -2.59 -3.24 -5.65 -5.63 -1.83
0.86 0.93 0.71 0.68 0.75 0.82 -0.1 0.64 0.44 -0.02 -1.01 -0.58 -1.09 -1.56 0.11 -0.86 -0.38 -0.45 -1.24 -1.39 -1.66 -0.73 -0.87 -0.56 -0.63 -0.78 -0.45 0.25 0.55 0.4 0.37 0.17 0.43
0.75 -0.08 0.86 0.69 0.73 1.06 0.46 -0.14 -0.21 -0.05 -0.63 0.19 -0.72 0.06 -0.15 -0.83 0.02 -0.56 -0.7 -0.74 -0.81 0.14 0.01 -0.7 -0.11 -0.36 -0.15 -0.15 -0.06 -0.02 -0.13 -0.41 -0.25
0.84 0.53 0.88 1.01 0.5 1.0 0.03 0.59 0.23 0.16 -0.71 -0.58 -0.25 -0.86 0.18 -0.28 0.02 -0.17 -0.72 -0.31 -0.51 -0.67 -0.87 -0.66 0.29 -0.1 0.01 -0.51 -0.86 -0.83 -0.45 -0.88 -0.02
1.38 0.38 1.85 1.54 1.85 1.19 0.94 1.01 1.61 0.85 -1.37 -1.14 -1.5 -2.39 -0.87 -3.35 0.45 -2.46 -1.67 -2.2 -1.5 -1.2 -4.81 -5.25 -0.49 -2.09 -1.48 -2.91 -2.27 -1.44 -2.3 -1.82 -1.17
0.59 -0.07 0.85 1.04 0.48 0.63 -0.38 0.79 0.04 0.3 -0.5 -1.13 -0.15 -1.27 -0.05 -0.26 0.29 -0.39 -0.42 -0.85 -0.56 -0.73 -0.54 -1.21 -0.19 0.28 0.34 0.22 -0.3 -0.26 0.14 -0.28 -0.09
0.53 0.15 0.8 0.5 1.03 0.98 0.69 0.05 0.32 -0.3 -0.5 -0.55 -0.89 -0.7 -0.25 -0.5 0.18 -0.04 -0.66 -0.7 -0.65 -0.39 -0.62 -0.39 -0.29 -1.13 -0.75 -0.05 0.18 0.3 -0.07 -0.09 0.28
0.64 0.05 0.82 0.6 0.62 0.48 -0.16 0.48 0.19 -0.34 -0.3 -0.6 -1.19 0.15 -0.07 -0.23 0.31 0.42 -0.36 -0.47 -0.22 -0.44 -0.76 -0.96 -0.41 -0.38 -0.19 -0.04 0.07 0.05 -0.12 -0.07 0.06
0.97 0.55 0.74 0.37 0.76 0.57 0.3 0.28 0.12 -0.21 -1.09 -0.48 -0.63 -0.11 -0.9 -1.19 -0.12 -0.72 -1.13 -1.12 -1.09 -0.35 -0.23 -0.38 -0.37 -0.29 -0.12 0.17 0.52 0.46 0.28 0.01 0.41
1.21 0.81 0.99 0.76 0.57 0.68 0.17 0.33 0.34 0.33 0.18 -0.24 -0.07 -0.12 -0.31 0.08 -0.05 0.0 -0.08 -0.23 -0.01 -0.72 -0.67 -1.97 -0.02 -0.1 -0.14 -1.77 -1.25 -0.95 -1.47 -1.5 -0.9
1.39 0.97 1.45 1.11 0.62 0.53 0.54 0.23 -0.15 -0.52 -0.98 -0.56 -0.45 -0.19 -2.88 -0.64 1.12 -1.44 -1.64 -1.69 -1.37 -0.14 -0.27 -0.81 -0.12 -0.68 -0.27 -1.05 -0.29 0.06 -0.52 -0.82 -0.15
0.56 0.33 0.69 0.43 0.62 0.45 0.18 0.46 0.27 0.12 -1.05 -0.81 -0.83 -0.62 -0.49 -1.12 0.32 -0.51 -0.79 -0.79 -0.86 -0.33 -0.16 -0.33 -0.86 -0.26 -0.07 0.36 0.45 0.45 0.28 0.05 0.52
1.72 1.59 1.59 1.72 1.41 1.06 1.44 0.01 1.17 -0.78 - -1.29 -4.93 -0.41 -3.87 - -2.18 - - - - -0.84 -1.41 1.34 -0.37 -1.66 -0.74 -2.14 -0.4 -1.33 -3.34 -1.33 -0.66
0.93 0.46 0.88 0.69 0.48 0.27 0.36 0.58 0.21 -0.02 -1.49 -0.6 -0.96 -0.54 -0.8 -1.64 0.21 -1.26 -1.14 -1.37 -1.29 -0.28 -0.32 -0.12 -0.8 -0.26 -0.12 0.35 0.44 0.43 0.33 0.26 0.58
0.54 0.39 0.4 0.15 0.6 0.43 0.29 0.34 0.25 -0.12 -0.61 0.06 -0.26 0.15 -0.8 -0.93 -0.63 -0.54 -0.25 -0.8 -0.64 0.02 0.08 -0.35 -0.36 -0.19 -0.24 0.15 0.53 0.26 0.12 -0.3 0.27
0.64 0.27 0.63 0.51 0.62 0.78 0.24 0.62 0.63 0.32 -0.67 -0.21 -0.77 -0.46 -0.97 -0.73 -0.31 -0.23 -0.58 -0.7 -0.66 -0.27 -0.33 -0.86 -0.29 -0.41 -0.41 -0.09 0.25 0.14 -0.2 -0.14 0.57
0.66 -0.64 0.53 0.76 0.17 0.88 1.62 0.73 0.92 0.51 -0.4 0.43 -0.63 0.48 0.13 -1.24 -1.18 -3.07 -1.59 -0.58 -2.21 0.61 0.57 -1.99 1.06 -1.6 -0.88 -2.68 -0.89 -0.03 -2.17 -2.4 -0.19
1.15 0.52 0.99 0.63 0.44 0.26 -0.15 0.25 -0.17 -0.7 -0.9 -0.89 -0.94 -1.21 0.64 -1.21 -0.14 -0.67 -1.03 -1.19 -0.76 -0.76 0.02 0.5 -0.69 -0.58 -0.53 0.64 0.15 0.1 0.63 0.27 0.14
0.88 0.64 1.1 0.84 0.5 0.25 0.27 -0.49 -0.71 -0.46 -0.86 -0.83 0.07 -0.22 -0.76 -0.71 0.02 -0.99 -0.63 -1.02 -0.68 -0.47 0.28 0.05 -0.33 -0.08 -0.13 0.32 0.25 0.08 0.29 -0.03 -0.05
0.71 0.88 0.77 0.8 0.75 1.0 0.08 0.13 0.06 -0.09 -1.1 -0.5 -0.49 -0.36 -1.38 -1.09 -0.31 -0.87 -1.01 -1.32 -1.14 -0.35 -0.24 -0.21 -0.33 -0.23 -0.18 0.24 0.46 0.26 0.2 0.0 0.18
1.07 0.9 0.56 0.37 0.59 0.58 0.31 0.21 -0.24 -0.27 -1.43 0.02 -0.06 0.17 -1.08 -1.63 0.4 -1.55 -1.52 -1.77 -1.53 0.76 0.74 -0.28 0.6 -0.4 -0.22 -0.45 0.15 -0.15 -0.76 -0.75 0.07
0.82 0.26 1.03 0.93 0.66 0.96 0.11 0.8 0.17 0.28 -1.48 0.11 0.17 -0.52 -1.36 -0.86 0.23 -0.91 -1.25 -0.95 -1.13 -0.02 -0.41 -1.06 0.07 -0.18 0.14 -0.59 -0.44 -0.32 -0.09 -0.19 -0.29
0.86 1.0 1.01 1.08 0.67 0.94 -0.03 0.44 0.22 1.04 -1.43 -0.49 -0.79 -0.87 -0.44 -1.77 0.42 -1.11 -1.45 -1.33 -1.53 -0.22 -0.36 -0.09 -0.77 -0.49 -0.17 -0.72 -0.02 0.15 -0.3 -0.71 -0.06
0.78 0.47 0.87 1.13 0.66 0.89 -0.34 0.24 0.1 0.0 -0.81 -0.91 -0.41 -0.49 -0.57 -1.14 0.44 -0.67 -0.83 -0.83 -0.83 -0.29 -0.17 0.3 -0.74 -0.49 -0.31 -0.17 0.05 0.21 -0.11 -0.06 0.03
1.54 1.27 1.18 1.01 1.02 1.15 -0.47 0.48 0.13 0.08 -0.22 -0.09 -0.17 -0.07 -1.95 -0.49 0.38 -0.61 -1.09 -0.94 -1.15 -0.58 -0.79 -4.32 0.85 -0.14 0.09 -2.24 -1.81 -1.65 -2.45 -1.98 -0.94
0.27 -0.1 0.42 0.35 0.74 0.77 0.54 0.02 -0.28 -0.4 -0.19 0.1 0.39 0.26 0.26 0.04 -0.21 -0.09 -0.28 -0.42 -0.15 0.07 -0.32 0.35 0.42 -0.7 -0.52 -0.59 -0.46 -0.44 -0.6 -0.78 -0.47
0.32 -0.0 0.75 0.55 0.81 1.04 0.21 0.19 0.39 0.12 -0.61 -0.48 -1.03 0.09 -0.51 -0.4 -0.01 -0.68 -1.11 -0.64 -0.9 -0.27 -0.76 0.49 -0.91 -0.59 -0.27 0.23 0.15 0.05 0.1 0.17 0.13
0.81 0.44 0.78 0.27 1.17 0.46 0.65 1.02 0.13 -0.33 -1.34 0.12 0.34 -0.92 -2.26 -1.68 -1.42 -1.1 -1.67 -1.92 -1.01 0.08 0.27 -0.07 -0.72 -1.03 -0.34 -0.18 1.24 0.47 -0.39 -1.19 0.29
0.87 0.89 0.91 0.89 0.51 0.33 0.2 -0.36 -0.54 -0.49 -0.22 -0.39 -0.66 -0.47 -0.22 -0.47 -0.07 -0.12 -0.3 -0.54 -0.3 -0.47 -0.39 -0.94 -0.1 0.0 -0.02 -0.02 0.04 -0.06 -0.11 -0.11 0.11
0.67 0.42 0.48 0.27 0.49 0.21 0.69 0.24 0.2 -0.26 -0.44 -0.17 -0.08 0.12 0.76 -0.13 -0.24 -0.29 -0.69 -0.25 -0.48 0.21 0.05 0.44 0.04 -0.58 -0.38 -0.79 -0.6 -0.36 -0.67 -0.85 -0.32
1.27 0.67 1.25 0.99 0.62 1.15 1.31 0.9 0.53 -0.17 -5.72 0.14 -1.87 -1.62 - - -1.33 - - - - -0.69 -0.27 -2.84 -0.58 -1.6 -1.42 0.82 1.68 -1.23 0.86 0.39 -0.76
0.78 -0.01 0.92 0.83 1.05 1.01 1.96 1.04 1.34 0.79 -2.06 -0.68 -1.05 -1.47 0.29 -1.83 -1.74 -2.56 -2.49 -2.6 -2.61 0.14 -0.22 -4.0 -1.64 -1.95 -1.33 0.06 0.32 -0.41 0.01 -1.04 -0.75
1.06 0.18 1.6 1.66 1.7 1.54 1.06 1.02 0.86 0.39 -1.77 -1.04 0.49 -2.36 -6.17 -2.89 -0.11 -3.33 -3.2 -4.42 -3.84 -0.38 -2.24 -0.79 1.3 -2.29 -1.83 -3.29 -2.1 -1.38 -4.36 -3.4 0.06
0.97 0.35 1.04 0.61 1.1 0.9 -0.07 0.31 0.4 -0.26 -1.46 -0.95 -1.3 -0.63 -0.89 -1.44 0.08 -1.45 -1.54 -1.37 -1.43 -0.58 -0.45 -0.79 -1.28 -0.6 -0.36 0.52 0.68 0.6 0.44 0.25 0.64
0.59 0.21 1.1 0.79 1.08 0.96 0.35 0.18 -0.55 -0.26 -1.21 -1.1 -0.61 -1.28 -0.32 -0.64 0.62 0.04 -0.89 -1.76 -1.38 -0.61 -0.4 -0.23 -0.62 -0.77 -0.63 0.23 0.34 0.43 0.24 0.3 -0.08
0.49 0.31 0.47 0.31 0.27 0.47 0.29 0.44 0.15 0.34 -0.34 -0.29 -0.42 -0.02 -0.39 -0.67 -0.27 -0.27 -0.53 -0.51 -0.39 -0.09 -0.19 -0.67 -0.21 -0.2 -0.12 -0.0 0.29 0.36 -0.06 -0.24 0.28
0.85 0.69 1.13 0.92 0.53 0.28 0.1 0.29 0.43 0.2 -0.9 -0.46 -0.46 -0.78 -0.44 -1.22 0.26 -0.52 -0.93 -0.79 -0.67 -0.21 -0.13 0.07 -0.86 -0.51 -0.32 -0.35 0.12 0.32 -0.39 -0.44 0.26
0.98 1.0 1.05 1.09 0.91 0.08 0.62 -1.61 -1.51 -1.87 -1.38 -0.31 -0.17 -0.59 -1.22 -1.25 0.27 -1.77 -1.44 -2.2 -1.31 0.17 0.59 0.66 0.5 -0.17 -0.28 0.04 0.22 0.03 -0.21 -0.23 0.1
1.01 0.93 0.84 0.87 0.44 1.03 -0.05 0.28 0.21 -0.22 -0.44 -0.63 0.29 -0.37 -1.99 -0.96 0.41 -0.59 -0.61 -0.98 -0.89 -0.01 0.24 -1.0 0.83 -0.28 -0.07 -0.86 -0.56 -0.34 -0.94 -0.76 -0.51
1.25 0.66 1.23 1.49 1.15 1.44 1.82 0.73 1.28 1.27 -5.44 -1.13 -1.29 -1.27 -5.43 -4.1 -1.17 - -6.46 -5.11 -5.49 -0.31 -1.14 - 0.5 -1.94 -1.45 -1.84 0.07 -0.16 -1.46 -2.17 -0.14
1.57 0.39 2.13 1.86 1.99 1.24 1.23 1.58 1.72 0.97 -4.41 -1.21 -2.32 -3.0 -2.49 -5.68 -0.66 -5.92 -5.1 -6.41 -5.38 -0.99 -4.88 -5.23 -1.24 -3.6 -2.26 -4.13 -3.04 -2.49 -3.58 -3.12 -2.02
0.89 0.59 0.96 0.89 0.83 0.88 -0.14 0.5 0.29 0.02 -0.69 -0.53 -0.27 -0.88 -1.79 -1.09 0.55 -0.42 -1.05 -1.14 -0.71 -0.34 -0.28 -1.02 0.4 -0.53 -0.4 -0.54 -0.07 0.27 -0.21 -0.49 0.25
1.03 0.64 0.51 0.36 0.75 0.63 0.42 0.32 0.1 -0.56 -0.78 -0.32 -0.15 -0.23 -1.03 -0.92 -0.85 -0.53 -1.16 -1.2 -1.2 0.15 -0.01 0.07 -0.44 -0.67 -0.65 0.19 0.52 0.32 0.3 -0.05 0.28
1.28 0.94 0.87 0.54 0.31 0.96 0.91 0.38 -0.26 0.01 -1.57 0.04 0.38 0.03 -3.12 -1.67 0.28 -1.56 -2.15 -1.85 -2.1 0.52 1.47 -0.64 0.87 -0.64 -0.35 -2.28 -1.29 -0.83 -1.94 -1.96 -0.04
0.47 0.32 0.72 0.45 0.45 0.36 0.66 0.16 0.1 -0.08 -0.35 -0.09 -0.22 0.39 -0.05 -0.15 0.13 -0.37 -0.76 -0.44 -0.58 0.01 0.16 0.17 -0.23 -0.7 -0.59 -0.17 -0.08 -0.19 -0.3 -0.6 -0.29
1.2 1.27 0.83 1.04 0.87 1.2 -0.15 0.24 0.32 -0.08 -1.59 -0.35 -0.85 -1.42 -0.62 -1.13 -0.65 -1.27 -0.85 -1.46 -1.36 -0.93 -0.69 -0.48 -0.75 -0.32 -0.25 0.13 0.32 0.16 0.03 -0.29 0.19
0.58 0.32 0.62 0.28 0.37 0.04 0.49 -0.09 -0.14 -0.43 -0.76 -0.41 -0.1 0.02 -0.43 -0.73 -0.07 -0.31 -0.52 -0.55 -0.62 -0.01 0.31 0.4 -0.32 -0.25 -0.19 0.12 0.42 0.27 0.13 -0.2 0.15
1.09 0.59 0.64 0.4 0.33 0.88 0.57 0.41 0.12 -0.19 -1.32 -0.48 0.49 -0.17 -1.69 -0.74 0.6 -1.55 -1.43 -0.71 -1.86 0.1 -0.11 -1.27 1.23 -0.12 0.09 -0.68 -0.82 -0.17 -0.72 -0.53 0.07

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.