Heatmap: Cluster_338 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
- 4.7 - - 2.8 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
-0.27 0.24 -0.86 -0.73 -0.14 0.43 0.23 0.07 -0.03 -0.33 -0.09 -0.02 0.15 -1.11 0.54 -0.15 -0.48 -0.77 -0.32 -0.45 -0.2 0.02 0.99 0.49 0.56 -0.23 -0.32 -0.31 0.52 0.53 -0.12 -0.35 0.12
-0.86 2.03 -1.31 0.02 -2.23 2.36 - 0.37 0.21 - - - - 1.22 - - 0.58 - 2.19 0.12 1.16 - - - 0.26 - - 0.14 0.2 -0.91 -1.0 - 1.58
- 3.51 - - - - - - - - - - - - - - 2.52 - - - - - - - - - - - - - - 3.98 -
- 3.94 - - - - - - - - - - - - - - 1.44 - - - - - - - - - - - - 2.86 - 2.95 -
0.92 0.5 0.84 0.45 1.08 1.14 0.43 0.92 0.86 0.55 -0.83 -0.47 -0.74 -0.15 -0.99 -0.91 -0.58 -0.55 -0.93 -0.79 -0.94 -0.02 -0.23 0.01 -0.43 -0.42 -0.38 -0.8 -0.41 -0.61 -0.86 -0.8 -0.54
0.36 -0.48 -0.03 -0.37 0.37 0.5 -0.02 1.06 1.09 0.72 -0.9 0.11 -1.81 -0.17 -0.06 -1.29 -1.61 -1.01 -0.98 -0.71 -0.99 -0.62 -0.66 -1.33 -1.21 0.24 -0.01 0.43 0.64 0.62 0.27 0.3 0.94
2.85 1.17 1.78 0.12 0.82 -0.74 -0.43 2.52 2.16 0.24 -3.15 -1.91 -2.13 -2.52 -3.53 -4.45 -1.71 -3.09 -3.46 -3.03 -3.7 -1.27 -1.64 -2.5 -2.05 -1.08 -1.19 -2.79 -2.63 -2.57 -3.02 -3.78 -2.56
0.18 -0.41 0.11 -0.43 0.51 0.12 -0.06 0.94 1.23 0.02 -0.2 -0.3 0.0 -0.36 -0.48 0.18 -1.08 -0.3 -0.47 -0.56 -0.42 -0.03 0.22 -0.58 -0.24 -0.51 -0.49 -0.03 0.33 0.4 0.14 -0.05 0.17
1.34 2.42 0.33 0.89 1.44 1.48 -1.79 2.0 0.99 -0.55 0.3 -1.86 -3.91 - 1.24 0.23 -2.75 - 0.12 -0.83 0.09 -2.86 -1.97 -0.6 -1.08 -5.08 - - - - - - -
- 3.76 - - - - 1.9 2.52 - - - - - - - - 1.5 - - - - - 1.25 - - 0.11 1.22 - - - - - 0.47
0.73 0.68 0.71 0.18 1.01 1.16 -1.03 1.14 1.3 1.0 -1.52 -1.47 -2.62 -1.07 -1.6 -1.8 -0.34 -1.55 -1.74 -1.16 -1.42 -1.55 -1.73 -2.13 -1.41 0.15 0.11 0.29 0.66 0.44 0.35 0.13 0.46
0.06 0.35 -0.14 -0.32 0.45 0.1 0.0 0.85 1.18 0.13 -0.5 -0.17 -0.05 -0.34 -0.73 -0.67 -0.31 -0.49 -0.27 -0.84 -0.54 -0.01 -0.2 -0.64 -0.14 0.12 0.09 -0.21 0.28 0.56 -0.05 -0.3 0.38
1.12 2.32 0.08 -1.0 1.29 0.79 -0.37 1.82 1.88 0.28 -0.01 - -3.58 - 0.09 1.58 -2.4 0.38 -0.53 -2.59 0.02 -0.76 - -2.75 -2.46 -5.45 -4.15 -1.75 -2.57 -1.53 -2.13 -1.95 -3.4
0.25 -0.25 0.16 -0.5 0.75 -0.1 0.25 1.09 1.21 -0.21 -0.88 0.72 0.17 -0.03 -0.38 -0.95 -1.02 -0.99 -0.66 -1.39 -0.42 0.9 -0.03 0.76 -0.04 -0.48 -0.49 -0.43 -0.31 -0.22 -0.26 -0.41 -0.4
-0.1 -0.47 -0.38 -0.75 0.5 0.32 -0.08 0.43 0.83 -0.68 0.07 0.3 -0.58 0.09 -0.3 0.08 -0.63 -0.21 -0.1 0.0 -0.24 0.61 0.31 0.13 0.13 -0.27 -0.28 -0.07 0.06 0.27 -0.14 -0.45 0.03
- 3.28 0.77 -1.59 0.34 - -0.82 -0.66 - -0.24 1.0 - -0.89 - - 0.11 1.44 1.59 - 1.42 - - - -0.06 1.56 - - - - - -1.02 - 0.55
0.14 -0.07 -0.49 -0.62 0.01 0.47 -0.24 0.49 0.32 0.2 0.11 0.25 -0.49 0.32 -0.01 -0.65 -1.54 -0.15 -0.37 -0.59 -0.05 -0.1 0.31 -0.98 -0.2 -0.04 -0.11 -0.01 0.62 0.55 0.43 -0.06 0.38
0.88 0.06 0.17 -0.53 0.28 0.02 -0.3 0.97 1.02 0.42 -0.29 -0.12 -1.04 0.04 -0.13 -0.23 -0.34 -0.19 -0.34 -0.23 -0.45 -0.08 -0.13 -1.19 -0.32 -0.18 -0.19 -0.17 0.33 0.16 -0.17 -0.32 0.09
0.26 0.44 -0.1 -0.44 0.24 0.47 0.21 0.56 0.86 0.24 -0.34 0.31 -0.14 -0.05 0.18 0.04 -1.59 0.55 0.37 0.17 0.51 0.18 -1.01 -1.07 -0.67 -0.23 -0.68 -0.43 -0.28 -0.23 -0.35 -0.6 -0.28
- 4.29 - - - - - 2.0 - - - - - - - - 3.23 - - - - - - - - - - - - - - - -
-0.11 0.71 -0.55 -0.54 -0.78 -0.92 0.5 -0.03 0.57 -0.41 -0.13 0.33 0.17 0.38 -0.03 -0.2 -0.33 -0.38 -0.36 -0.26 -0.36 0.75 1.16 -0.08 0.17 -0.59 -0.71 -0.23 0.17 0.17 -0.3 -0.59 0.1
0.52 1.38 0.33 0.61 1.0 0.24 -1.2 1.51 1.54 0.38 -3.25 0.7 -4.0 -2.03 2.01 -2.26 -4.13 -3.69 -2.94 -4.5 -3.11 1.95 -3.17 -1.05 -0.72 -1.25 -1.07 -1.3 -0.76 -0.73 -1.08 -2.54 -0.77
-0.27 0.34 -0.65 -0.76 -0.09 -0.36 0.31 0.45 0.7 -0.08 0.3 0.54 0.26 0.22 0.04 0.24 -0.83 0.13 0.39 0.5 0.38 0.64 0.32 -0.5 0.38 -0.53 -0.6 -0.96 -0.47 -0.5 -0.85 -0.99 -0.52
- 4.33 - 1.8 - - 1.53 1.73 - - - - - - - - 1.65 - - - - - - - - - - - - - - - -
0.01 -0.06 -0.45 -0.57 -0.02 0.58 0.02 0.68 0.73 0.43 -0.16 0.41 -0.58 0.23 -0.11 -0.48 -0.95 0.01 -0.43 -0.35 -0.33 -0.12 0.07 -0.75 -0.02 0.12 0.03 0.15 0.15 0.04 0.16 -0.15 0.05
-0.33 0.39 -0.85 -1.22 -0.48 -0.67 0.11 0.07 0.33 -0.6 0.28 0.48 0.64 0.47 0.21 0.45 -1.12 0.09 0.51 0.66 0.58 0.93 1.06 -0.05 0.67 -0.64 -0.85 -1.36 -0.83 -0.98 -1.34 -1.62 -1.02
0.51 0.71 0.62 0.39 0.78 0.51 0.64 0.63 0.35 0.02 -0.79 -0.21 -0.08 0.05 0.08 -0.47 -0.37 -0.58 -0.48 -0.63 -0.64 0.29 -0.02 -0.1 0.2 -0.61 -0.71 -0.52 -0.21 -0.2 -0.61 -0.9 -0.46
1.21 0.03 0.27 0.12 0.9 1.44 -1.54 1.36 2.68 0.42 -2.08 -0.67 -2.69 -1.18 -1.26 -1.97 -1.45 -1.69 -1.4 -2.28 -1.59 -1.53 -2.97 -2.55 -2.0 0.53 0.48 -0.77 -0.12 0.34 -0.72 -0.68 -0.59
0.52 0.84 0.25 0.15 0.9 1.12 -0.47 1.35 1.57 0.48 -0.41 -0.15 -0.7 -0.12 -0.05 -0.65 -1.33 -0.29 -0.77 -0.75 -0.58 -0.38 -0.26 -1.6 0.28 -0.47 -0.69 -1.1 -0.72 -0.68 -0.93 -0.75 -0.67
-0.28 2.49 - 0.68 - - -0.26 1.94 1.79 2.36 - - - - - - 2.49 - - - - 1.28 - - - -2.49 -1.64 - - - 1.16 - -0.11
0.62 0.07 0.27 -0.29 0.2 0.07 -0.14 1.05 0.91 0.61 -0.67 -0.07 -0.23 -0.08 -0.87 -0.99 -1.07 -0.25 -0.31 -0.46 -0.59 -0.02 0.05 -0.96 -0.5 -0.55 -0.65 0.16 0.35 0.37 0.21 0.03 0.52
0.92 1.03 0.76 0.65 0.68 0.2 -0.84 1.03 0.81 0.54 -0.96 -1.13 -1.23 -1.38 -0.44 -1.18 0.11 -0.77 -0.95 -0.7 -0.64 -0.56 -0.15 -1.48 -0.61 -0.53 -0.68 0.14 0.29 0.32 0.21 0.18 0.11
0.28 0.23 -0.09 -0.33 0.55 0.85 -0.17 1.02 1.37 0.53 -0.32 -0.41 -1.86 -0.91 -0.34 -1.07 -1.39 -0.15 -0.65 -0.42 -0.55 -0.84 -1.16 -2.32 -0.92 0.24 0.11 0.25 0.44 0.52 0.31 0.22 0.39
- 4.24 - - 1.63 - - 1.5 0.61 2.74 - - - - - - - - - - - - - - - - - - - - - - -
- 3.72 - - - - - - - - - - - - - - 2.43 - - - - - - - - - 0.4 1.76 - 1.73 - 1.65 1.71
- 3.96 - - - - - - - - - - - - - - 1.34 - - - - - - - - - - 0.95 1.43 - 2.98 - 1.28
1.28 0.71 1.11 0.48 1.22 0.87 0.25 1.1 0.94 -0.29 -1.36 -0.3 -0.3 -1.09 -0.52 -1.01 -1.22 -1.61 -1.2 -1.4 -1.5 -0.1 0.17 -0.65 0.04 -0.49 -0.64 -0.53 -0.28 -0.27 -0.48 -0.66 -0.39
- 4.57 - - - - - - - - - - - - - - 2.0 - - - - - - - - -0.07 - - - - 2.08 - -
0.42 1.1 0.45 -0.86 0.52 0.84 0.04 0.62 1.08 -0.29 0.43 0.41 -1.27 -1.36 -0.21 -0.71 -1.3 0.62 0.71 0.03 1.08 -0.67 -1.21 -2.61 -0.78 -1.51 -1.71 -1.12 -0.81 -0.01 -0.4 -0.41 0.26
0.24 0.18 0.08 -0.16 0.29 -0.33 0.05 0.87 0.95 0.35 0.34 0.07 -0.36 0.24 0.49 -0.25 -0.99 0.26 0.28 0.11 0.28 0.24 0.33 -0.84 -0.05 -0.05 -0.19 -1.18 -0.95 -0.87 -0.77 -1.18 -0.82
0.3 1.82 0.05 0.06 1.38 0.27 0.92 1.42 1.37 0.1 -0.82 0.71 0.38 0.44 -0.9 -1.25 -3.09 0.46 -0.15 -1.11 -0.21 0.89 - -0.21 0.52 -7.24 -7.18 -3.72 -3.67 -3.49 -4.38 -4.55 -3.41
-0.06 0.8 -0.01 0.07 0.53 0.28 -0.4 0.58 0.21 -0.34 0.11 -0.19 0.67 -0.33 0.45 0.46 -0.73 -0.04 -0.11 -0.31 -0.15 0.36 0.28 0.81 0.82 -0.47 -0.46 -1.33 -1.19 -0.94 -1.15 -1.28 -1.23
- 4.3 -0.57 - 1.78 - - - 0.35 - - - - - - - -0.33 - - - - - - - - - - - - 0.64 1.89 - 0.86
0.26 0.22 0.13 -0.66 0.21 0.42 0.32 0.27 0.22 -0.41 -0.32 0.32 -0.21 -0.21 0.86 -0.61 -1.45 -0.3 -0.49 -0.47 -0.23 0.02 0.42 0.62 -0.06 0.15 -0.09 -0.08 0.04 -0.2 -0.12 -0.45 -0.11
0.27 0.67 0.18 0.09 0.75 1.19 -0.04 0.67 1.08 0.07 -1.46 -0.2 -1.03 -1.0 -1.11 -1.83 -0.49 -1.54 -1.6 -1.6 -1.4 -0.71 -0.66 -1.23 -0.46 -0.12 -0.06 0.46 0.78 0.72 0.34 0.25 0.83
- 3.9 - - -1.38 0.83 - - -0.05 2.86 - - - - - - 2.95 - - - - - - - - - - - - - - - -
0.04 3.73 -0.63 - 2.27 - - 0.92 1.77 2.99 - - - - - - - - - - - - - - - - - - - - - - -
- 2.11 - - - - - - -0.07 - - 0.92 1.09 1.67 - 0.84 1.04 - -0.68 0.84 3.19 -0.17 -0.78 - - -1.06 -0.07 -1.73 -0.09 -1.78 - -1.48 -1.56
0.23 0.56 -0.2 -0.17 0.06 0.35 -0.36 0.87 0.82 0.83 0.49 0.29 -1.16 0.3 0.12 -0.53 -1.6 0.23 -0.02 -0.08 0.17 -0.28 -0.89 -1.15 -0.36 0.27 0.11 -0.52 -0.45 -0.51 -0.38 -0.47 -0.02
0.65 0.74 0.12 -0.13 0.41 0.31 -0.03 0.94 0.92 0.43 -0.49 -0.24 -0.12 -0.52 0.26 -0.29 -0.91 -0.44 -0.75 -0.78 -0.75 -0.08 0.34 -0.21 -0.26 -0.71 -0.8 -0.08 0.14 0.01 -0.1 -0.25 -0.15
- 4.27 - - - - - 3.24 - - - - - - - - 1.81 - - - - - - - - - -0.32 - - - - - -
-0.24 0.9 -0.59 -0.55 -0.3 -0.27 0.46 -0.08 0.21 -0.43 0.18 0.42 0.57 0.48 0.11 -0.12 -1.36 -0.42 -0.57 -0.34 -0.68 0.83 1.14 1.12 0.52 -0.77 -0.8 -1.05 -0.35 -0.27 -0.8 -1.3 -0.59
1.53 1.48 1.25 0.63 1.4 1.28 -0.89 1.42 1.24 -0.17 -1.04 -1.52 -1.99 -1.02 -1.07 -1.78 -0.39 -0.52 -1.12 -1.65 -1.32 -1.56 -0.88 -3.42 -0.13 -1.46 -1.32 -0.44 -0.24 -0.47 -0.44 -0.89 -0.67
0.17 3.23 0.7 -1.37 1.13 - 0.22 - 2.56 - - 1.24 - - - - 2.46 - - - - - - - - -0.22 0.39 - 0.22 - - - -
0.25 0.34 -0.18 -0.51 0.36 0.49 0.38 0.73 0.95 0.37 -0.8 0.01 -0.39 -0.47 -1.01 -0.4 -0.85 -0.07 -0.34 -0.19 -0.24 -0.1 0.04 -0.46 -0.34 -0.58 -0.25 -0.2 0.59 0.44 0.01 -0.34 0.31
-0.33 0.59 0.12 1.01 1.24 1.24 -1.09 1.1 1.01 1.17 0.45 -0.45 -2.6 -1.09 -1.02 -1.26 0.24 -0.56 -0.77 -1.43 -2.17 -0.77 -1.41 -3.09 -0.17 -2.48 -1.91 0.23 0.42 0.5 -0.21 -0.47 0.47
- 4.47 - - 0.87 - - - - - - - - - - - 2.15 - - - - - - - - - - - - - - - 2.21
0.67 1.49 0.08 0.02 0.38 0.35 -0.3 0.97 0.91 0.97 -0.4 -0.14 -0.65 -0.23 -0.3 -1.31 0.34 -0.72 -0.82 -0.72 -0.98 -0.13 0.13 -0.87 -0.35 -0.99 -1.07 -0.41 -0.12 0.12 -0.51 -0.61 0.0
- 4.25 - - 2.15 - - - - - - - - - - - -1.45 - - - - - - - - - - - 0.76 - 0.66 - 2.56
1.12 1.09 1.07 0.92 1.28 1.29 -0.08 1.16 0.58 0.39 -1.44 -0.27 -1.26 -0.92 -1.47 -2.34 -0.54 -0.52 -2.94 -0.98 -2.67 -0.39 -1.6 -1.09 -1.37 -0.52 -0.28 -0.31 0.11 0.13 -0.32 -0.4 -0.02
0.63 0.1 0.22 -0.46 0.73 -0.02 0.51 0.89 0.97 -0.49 0.15 0.15 -0.6 -0.14 0.19 0.08 -0.98 -0.09 0.13 -0.05 0.13 0.09 0.12 -1.12 0.07 -0.44 -0.56 -0.64 -0.47 -0.32 -0.51 -0.54 -0.57
0.68 0.93 1.12 1.05 1.26 1.34 -1.1 1.3 0.84 0.69 -0.8 -1.26 -2.05 -3.0 -0.53 -1.76 -0.47 -0.98 -1.41 -2.01 -0.75 -1.56 -1.08 -0.23 -1.3 -0.21 -0.21 -0.2 0.07 -0.0 -0.2 -0.37 -0.32
1.0 1.23 1.18 0.96 1.12 0.86 -2.47 1.56 1.2 1.21 -0.5 -1.25 -1.15 -0.47 -2.11 -1.82 -0.36 -0.51 -0.44 -1.83 -1.3 -2.29 -2.51 -1.99 -2.16 -1.52 -1.59 -0.53 -0.22 0.28 -0.1 -0.15 -0.23
0.92 1.36 1.04 0.86 1.0 0.46 -0.12 0.18 0.54 -0.76 -0.52 1.23 0.56 -1.36 -0.0 -1.96 -1.72 -2.33 -1.88 -2.45 -1.81 2.1 -1.33 -0.38 0.28 -0.99 -1.21 -1.4 -1.08 -1.65 -1.27 -1.58 -1.83
- 3.59 - - -2.57 1.25 - 0.61 - - -1.23 - -1.18 - -0.12 - 2.58 - - - - -1.22 2.56 - - -3.42 0.88 - - -1.08 - -1.28 -
0.98 0.82 0.76 0.25 0.81 0.01 0.23 0.96 1.08 0.49 -1.55 -0.94 -1.9 -0.57 -0.5 -1.77 -0.74 -1.59 -1.44 -1.47 -1.68 -0.87 -0.69 -1.35 -0.83 -0.35 -0.63 0.58 0.67 0.61 0.48 0.26 0.53
-1.0 1.85 -2.55 -0.61 -1.02 0.01 0.17 -1.17 -2.92 - 0.35 1.86 -0.67 0.72 -2.77 0.78 0.01 - 1.08 -1.7 -1.67 0.21 2.09 0.62 1.02 0.54 0.32 -3.7 -3.9 -3.77 - - -2.51
-0.31 0.6 0.45 0.13 1.18 0.93 -0.03 0.93 1.43 0.73 -0.46 0.7 -2.79 -3.37 0.4 -1.93 -1.18 - -0.4 -1.0 -0.97 -0.64 -0.49 -1.06 -1.2 -0.11 -0.82 -0.05 0.55 0.74 -0.4 -1.46 0.5
0.51 0.18 0.49 0.27 0.85 0.79 0.05 1.62 1.56 0.54 -1.66 -0.47 -0.37 -1.25 -0.78 -0.81 -0.79 -1.67 -0.87 -0.66 -0.8 -0.05 -0.46 -0.56 -0.92 0.36 0.43 -0.98 -0.59 -0.17 -0.74 -0.58 -0.13
0.76 0.78 0.67 0.25 0.9 1.07 -1.14 1.32 0.96 0.76 -0.69 -0.94 -1.31 -0.74 -0.59 -1.54 -0.53 -0.72 -1.23 -1.33 -0.96 -1.02 -0.86 -0.83 -0.99 -0.08 0.08 -0.1 0.38 0.1 0.03 -0.12 0.13

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.