Heatmap: Cluster_108 (HCCA cluster)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Roots (apex), 7 DAG
Roots (differentation zone), 4 DAP
Roots (elongation zone), 4 DAP
Roots (meristematic zone), 4 DAP
Roots (stele cells), 7 DAS
Roots (tip)
Leaves (rosette), 21 DAG
Leaves (rosette), 29 DAG
Leaves (rosette), 35 DAG
Leaves (rosette), 42 DAG
Leaves (rosette), 57 DAG
Epidermis cells
Mature guard cells
Stems (internode)
Stems (internode), senescent
Meristem (M1-3), 7-9 DAG
Meristem (M4-6), 1-12 DAG
Meristem (M7-1), 13-16 DAG
Axis of the inflorescence
Pedicel
Flowers (receptacles)
Flowers (floral buds)
Flowers (sepals)
Flowers (petals)
Flowers (stamen filaments)
Flowers (anthers)
Flowers (carpels)
Flowers (ovules)
Stigmatic tissues
Pollen
Siliques
Siliques, senescent
Pods of Siliques
Pods of Siliques, senescent
Embryo
Endosperm
Seeds, dry
Seeds, from senescent siliques
Seeds, young
Seeds, germinating
Seedlings, 5 DAG
Seedlings, 11 DAG
Seedlings, 14 DAG
Seedlings, etiolated
AT1G01580 (FRO2)
4.13 -4.61 -5.6 0.72 - -1.28 -2.21 -1.04 -0.42 -0.26 -1.43 -4.61 - -5.48 -0.29 -0.64 -2.68 -5.35 -4.45 -2.75 2.36 0.15 -0.82 - -4.95 0.18 -10.06 - - - -8.63 1.03 -9.11 -3.77 -6.91 -7.97 1.48 0.84 -9.42 -0.37 -0.06 -3.27 -0.03 1.18
3.85 3.55 1.63 - - - - - - - -2.87 - - - - 3.24 1.43 -2.29 - -3.09 - - - - - - -6.04 - - - -7.8 - - - - - - - - -1.36 - -1.66 -2.91 0.45
AT1G22880 (CEL5)
1.25 -1.2 -1.44 3.56 -6.51 2.28 -1.58 -1.41 -0.16 -0.21 -0.6 -2.49 -2.28 -0.98 0.08 -0.93 -0.79 -0.35 -0.66 -0.68 0.92 -0.58 -0.62 -0.56 -1.21 -1.41 0.44 0.26 -0.7 -5.59 -0.92 -0.44 -0.89 -1.79 -1.25 -1.91 -1.26 -0.61 -0.13 -0.21 -0.58 -1.2 -0.63 -0.69
AT1G23210 (GH9B6)
2.0 -2.1 -3.11 4.05 - 2.8 - - -3.09 -1.32 -3.4 - - -2.7 -4.19 -3.29 -2.91 -5.58 -3.29 -3.74 -4.58 -2.68 -5.37 -3.06 -2.42 1.72 -3.77 -4.3 - 2.89 -4.36 - -6.28 -4.44 -2.13 -0.68 - - -3.06 0.22 -1.77 - -1.16 -0.83
3.89 3.55 3.12 -4.77 - 0.86 - - - - - -8.05 - - -9.67 - - -12.05 - - - -7.74 - - -8.81 -10.72 -4.21 -2.82 -6.29 - - -8.12 -8.15 -7.82 - -5.48 -9.65 -8.04 -5.91 1.7 -0.76 - -0.19 0.95
2.1 -2.31 0.5 2.29 - 1.01 -0.49 -0.81 -0.09 -0.28 -0.37 -5.09 -3.2 -0.78 -0.17 0.18 0.12 -0.22 -0.4 -0.11 -0.09 0.1 -0.33 -0.56 -0.78 0.22 0.41 0.4 -0.08 -1.75 -0.18 -2.75 -0.12 -0.91 -0.32 1.29 -2.48 -3.2 0.33 -0.63 -0.2 0.2 0.52 -1.05
3.48 -2.76 1.04 1.34 - 0.37 -1.11 -2.18 -2.83 -2.66 -2.76 - - -0.45 -1.65 -0.49 -0.26 0.13 -0.43 -0.18 -0.49 -0.6 -0.63 -0.42 -0.12 -0.7 0.33 0.62 -0.08 -3.55 -0.47 -1.2 -0.87 -1.07 0.23 2.06 - -4.29 0.98 0.19 -1.5 -0.64 -1.56 -1.99
1.28 -0.52 0.87 1.74 -4.61 1.35 -1.52 -5.41 -5.48 -4.44 -4.78 - - 0.17 0.46 -2.83 -1.78 -0.91 -0.09 -0.62 -0.19 1.2 0.52 3.31 1.58 -0.42 -0.44 -0.53 1.36 -8.73 -0.92 -3.85 -1.56 -0.99 -2.47 -5.06 -9.35 -8.55 -0.45 0.09 -1.58 -1.95 -1.16 -0.34
4.38 - -3.38 4.2 - 1.28 - - - - - - - - - - - - - - - - - - - -3.82 - - - - - - -5.28 - - -1.59 - - - -0.82 -1.19 - -2.5 -0.68
5.13 2.84 - - - - - - - - - - - - - - - - - - - - - - - -3.65 - - - - - - - - - -2.94 - - - -4.0 -2.86 - - 0.57
5.17 - -2.01 1.09 - -1.0 - -3.66 -1.4 -1.82 -2.77 - - -3.92 -4.1 -1.53 -6.66 -3.67 -3.88 -3.39 -4.25 - - - - -0.61 -2.87 - - - -7.09 -4.16 -5.01 - -0.46 -1.97 - - -4.1 - -0.42 - -2.2 -0.75
2.8 -5.32 -3.93 4.95 - 1.58 - -10.11 - - - - - - - -4.69 -9.18 -10.8 - - - -7.48 - - - -9.09 - - - - -9.11 - - -6.6 - -8.53 -7.4 -9.17 -9.34 0.77 -1.6 -6.52 -1.24 -1.03
4.66 3.42 -1.82 - - - - - - -4.43 -2.76 - - - -2.84 - - - - - - - - - - - - - - -2.61 - - - - - - - - - 1.33 -0.19 - -0.94 1.76
4.44 1.14 - - - - - - - - - - - 1.27 1.11 - - - - - - - - - - - - - - - - - - - - - - - 0.52 1.23 - - 2.82 2.22
5.4 - - - - - - - -5.17 - - - - -2.22 -2.4 -2.18 -4.7 - - - - - - - - - -6.84 - - - - - - - - - - - - - - - - -0.04
AT1G56160 (MYB72)
3.36 -2.92 -3.9 - 4.54 -4.55 -3.7 -3.0 -1.04 -1.43 -1.18 -0.31 - -3.8 0.61 -2.26 -4.6 -6.06 -4.8 -3.99 -2.53 -1.77 -4.87 - -3.21 -1.4 -1.94 -2.79 -4.86 -0.57 -1.48 - -2.44 -2.94 -1.05 0.79 -3.68 - -2.36 -4.81 -2.1 -3.8 -2.73 -1.75
4.34 3.49 -1.1 - - -1.84 - - - - - - - - - - -4.09 -0.27 - -1.41 - - - - - 0.36 -1.89 - - 0.75 - - - - - 1.48 -0.44 - - -0.34 -0.24 - - 1.09
2.7 -1.14 -1.21 4.52 - 3.35 - - - - - - - -4.0 - - - - - - - - -7.51 - - - - - - - -9.42 - -8.6 -6.5 - - - - - -4.65 -1.12 - -1.57 1.36
- 2.1 - - - - - - -0.7 - -0.58 4.57 - - 1.33 - -1.34 -0.08 - - 0.03 - - - - - - - - - - - - - - 2.53 - - - 0.56 - - 0.97 -0.63
AT1G78090 (TPPB)
3.17 2.76 0.13 -5.29 - -2.97 -3.84 -1.6 -9.65 - - - - 0.36 -4.1 -0.81 -1.95 -5.25 -2.32 -1.62 0.44 1.95 -1.46 0.26 -1.02 2.5 -0.7 0.88 -3.54 -8.71 0.03 -9.09 -1.24 -4.51 - -0.69 - - 2.29 -3.92 -2.31 -3.07 -0.99 -0.91
AT2G14920 (ST4A)
4.67 -0.97 3.45 -0.68 - 2.3 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.94 - - - -2.08 -2.92 - -0.57 -1.08
5.45 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -2.15
5.42 - - - - - - - - - - - - - - - -4.63 -3.23 - - - - - - - -2.58 - - - - - - -4.6 - -2.35 - - - - -0.55 -3.3 - - -
AT2G21610 (PE11)
2.17 - - 4.58 - 3.01 - - - - - - - - - - - - - - -1.34 - - - - -4.0 - - - - - -1.35 - 2.13 - - - - - -0.43 -3.43 - -1.09 -0.01
3.79 2.12 0.32 -5.25 - -5.29 -4.38 -1.54 -2.06 -3.72 -3.6 -5.97 - 0.66 -0.11 1.88 1.32 -0.21 -2.29 -3.22 -0.77 -0.96 -2.93 -4.82 -5.16 -4.6 -1.12 -0.33 0.35 - 0.02 -8.48 -0.16 -7.41 -3.39 -9.28 -8.73 -7.92 -0.91 -1.28 0.7 -1.29 -1.1 2.18
AT2G28160 (FRU)
3.83 3.65 2.51 1.09 - 1.53 -3.98 -4.2 -1.61 -1.0 -0.97 -7.73 - -3.42 -4.4 -3.76 -3.37 -3.52 -3.62 -2.59 -4.09 -2.98 -1.9 -2.82 - -5.32 -2.97 -5.02 - - -4.32 -7.91 -5.41 - -2.85 -5.76 - -7.48 -5.06 -0.53 -1.78 -1.55 -0.99 0.59
0.13 5.12 - - - - - - - - 1.54 - - - - - - - - - - - - - - - - - - - - - - - - -0.97 - - - - -0.94 2.07 - -
- 4.62 - - - - - - - 1.0 3.78 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.9
AT2G31081 (CLE4)
5.15 2.25 0.47 - - -1.3 - - - - - - - - - - - - - - - -2.44 - - - - - - - - - - - - - - - - - - -2.67 - -1.72 0.5
5.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.63 - - 1.82 - 0.72 - - - - - - - -
4.54 - -0.05 0.81 - 3.82 - - - - - - - -2.58 - - - -1.68 - - -2.68 - - - - -2.56 -5.57 - - -2.5 -2.36 - - - - -1.27 - - - -1.59 -0.56 - -2.83 0.08
2.39 0.82 -0.01 -0.52 -9.23 -0.19 -0.16 -0.9 -0.13 0.05 0.45 -4.61 -3.35 -0.54 0.59 -1.24 -1.32 -0.79 -1.07 -1.46 -0.35 0.09 1.17 -0.75 -1.08 -0.68 -0.26 -0.27 -1.31 -9.34 0.28 -0.84 0.38 1.72 0.08 1.9 -0.51 -1.56 0.17 -0.8 -0.15 -1.0 -0.6 0.35
4.82 0.82 0.84 - - -0.95 - - - - - - - - - - - - - - - - - - - -0.37 -3.06 - - - - - - - - - - - - 3.15 - - 0.83 -2.07
5.39 - - - - - - - - - - - - - - -3.15 -3.6 -2.95 - - - - - - - - -6.59 - - - -2.42 - -3.83 - - -0.52 - - - - -1.43 - - -1.65
3.78 4.58 1.93 -3.25 - -4.58 - -6.27 - - - - - - -5.31 -4.85 - - - - -6.9 - - - - -6.93 -8.68 - - - - - -7.45 - -5.25 - -5.88 - -4.44 -0.45 -1.35 - -2.86 -0.09
2.67 4.7 2.93 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.99 - - - 0.4 -0.77 - -0.24 -0.41
4.36 -3.92 -1.67 4.32 - -0.31 -6.63 - - - - - - -6.16 - -11.11 -8.77 -8.45 -6.89 -6.24 -10.26 - -6.0 - -8.98 -10.01 -6.07 -5.33 - - -8.47 - -7.95 - - -5.82 - - -8.32 -1.09 -1.06 - -0.93 -0.64
4.28 -0.35 3.57 0.09 - 2.05 -2.26 - - - - - - - - - -6.38 - - - -5.57 - - - - 0.15 - - - - - - - - - - - - - 1.08 0.82 -2.82 -3.07 0.39
3.96 - - - - - - - 0.66 -0.38 1.14 - 2.7 - 2.91 - - - - - - - - - - - - - - - -0.64 - - - - 3.1 - - - - - - - -0.74
4.77 -1.23 2.87 -0.94 - 0.95 - - - - - - - - - - - - - - - - - - - -5.68 - - - - -4.61 - - - - -2.05 - - - 2.07 -0.55 - - 0.48
3.48 3.61 3.1 -4.9 - 1.4 - - - - - - - -8.93 -9.84 -7.39 -10.28 -10.93 - - - - - - - -11.42 -13.81 - - - - -7.63 -9.5 -8.67 - -6.53 -9.83 -7.98 - 1.81 0.5 -9.95 0.6 1.51
5.46 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
2.77 -0.94 2.6 3.6 - 1.46 - - - - - - - - - -2.2 - -6.91 - -5.07 -5.82 2.55 -5.78 0.4 -2.2 - -0.69 -0.82 1.54 - -6.69 - - - - -2.2 - - -1.69 0.82 -2.94 - -0.71 -0.11
4.12 -1.48 - 1.54 - -1.6 - - -4.0 -4.04 - 1.33 - - - -3.97 -4.44 -3.09 - -2.8 - - -3.36 - -1.84 3.41 -3.85 -2.36 -2.62 -2.2 -3.19 - - -2.5 -1.19 1.55 -0.83 -2.91 -4.9 -0.19 -3.38 -1.36 0.71 -0.12
2.14 -1.5 -2.49 - - - -5.46 -7.64 - -7.7 - - - - -5.85 - - -5.47 -4.31 -5.4 -0.3 1.45 2.54 -0.28 - 0.58 -4.14 - - -4.26 -2.33 3.12 -1.73 -0.17 -2.33 -1.81 0.38 2.79 -3.96 2.6 -3.37 - -2.89 0.97
5.34 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.69 - - - - - - - -1.74
4.77 - - 2.91 - 0.76 - - - - - - - - - - -1.19 - - - - - - - - - -0.5 0.64 - - - - - - - - - - 1.68 - 0.73 - - -
5.03 2.18 - - - - - - - - - - - - - - -2.99 - - - - - - - - - - - - - - - - - - - - - -3.66 2.39 - - -0.53 -0.45
AT4G19690 (IRT1)
4.05 -5.72 - - - - - - - - - - - -2.02 -7.62 -3.53 -7.7 -7.28 -8.53 -5.95 -1.64 0.77 -1.74 -5.92 -3.29 1.36 0.48 2.33 1.94 - -9.09 - -9.06 - - - - - 0.84 -9.39 0.82 -7.6 0.54 2.76
5.16 1.27 -4.13 -2.49 - -2.32 - -3.93 - - - - - 0.34 -4.22 - - - - - - - -4.02 -3.25 - - - - -3.32 - -2.47 - -1.86 - - - - - - 0.43 -2.11 -3.07 -1.73 0.39
2.67 4.18 0.58 -3.56 - 1.72 -5.27 - - -7.89 - - - - - - - -6.68 - - - -5.11 - -4.48 1.97 2.92 -8.88 -3.67 - - - - - - - - - - -7.6 0.45 -1.55 -3.15 -2.75 -0.08
4.1 4.67 - - - - - - - - - - - - - - - - - - - - - - - -0.61 - - - - - - - - - - - - - -0.4 - - - -
0.89 -4.23 -5.17 5.06 - 2.27 - - - - - - - - - - - - - - - - - - - -6.68 - - - - - -5.32 - - - -6.09 - -5.76 - 0.63 -1.18 - -0.29 -0.04
4.32 -0.0 2.83 - - -0.28 -1.47 -4.36 -5.19 -4.98 -4.11 -4.31 - 1.24 -1.13 -0.44 -2.47 -0.29 -0.19 0.19 -1.12 -2.37 -0.72 -2.92 -0.88 0.97 -1.41 -2.4 -3.56 - -0.84 -4.49 -0.34 -1.39 - -4.39 - - -3.31 -2.63 -2.51 -1.41 -0.96 -2.22
5.25 0.26 - - 1.45 - - - -5.85 - -5.85 - - - -0.21 - - - - - - - - -4.26 - -3.83 -3.28 - - - -6.15 - -6.21 - -2.45 -1.9 - - - - -3.41 - - -2.32
4.24 4.42 0.92 -0.48 - -4.25 - - - - - - - - - - - - - - - - - - - -1.17 - - - - - - -3.83 - - - - - - - -2.58 - -2.05 -2.1
-0.11 2.7 2.97 -3.22 - -6.26 -1.23 -5.62 -6.19 -8.46 -6.18 - - 1.73 -6.87 1.64 0.96 -1.27 -4.49 -2.57 1.09 -2.98 -5.16 - -2.97 -2.49 -1.81 -5.39 3.37 - -4.34 -5.47 -4.77 - - - - - -4.38 -2.09 0.15 -1.76 -0.52 1.75
4.21 4.27 2.65 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
AT5G23990 (FRO5)
4.46 4.15 -2.23 -5.87 - -7.31 -7.95 -6.46 -4.66 -5.15 -6.14 - - - - - - - - - - - - - - - -7.69 - - -7.37 -9.36 - -8.51 - - -5.11 - - - - 0.55 -2.99 -6.11 1.25
4.35 4.3 0.45 - - - - - - - - - - - - - - - - - - - - - - - -5.09 - - - - - - - - - - - - -0.02 -1.57 - -0.54 -1.19
3.69 4.58 -1.84 - - - - - - - - - - - - - - - - - - - - - - - -8.26 - - - - -4.79 - - - -4.73 - - - 1.28 0.24 - 1.15 -0.09
4.43 -2.8 2.51 0.23 - -0.31 -4.18 - - - - - - - - 1.8 2.08 -0.39 - - -4.01 - - - - -2.92 -7.24 - - - - - - - - -2.1 - - -1.47 -3.67 -2.63 - 2.24 -1.73
2.38 -1.7 1.69 -1.0 - 0.09 -4.37 -2.79 -6.83 -7.64 -7.49 - - -1.64 -4.47 -1.97 -2.11 -1.55 -3.55 -4.29 -0.13 1.56 -5.25 -4.02 -2.14 3.37 -1.62 -1.51 -2.22 3.26 0.22 - -2.76 -2.67 -1.73 1.6 - - 0.33 -1.83 -1.72 -3.9 -2.69 -1.74
3.41 3.84 3.3 -0.92 - -2.35 - -8.54 - -7.28 -8.66 - - - -3.98 - - -9.14 -6.85 - -5.64 -5.82 - - - -4.07 -7.48 - -1.34 -2.03 -12.0 - -8.89 -3.54 - - - - -1.8 0.13 -2.04 -5.86 -4.11 2.56
AT5G45105 (ZIP8)
5.29 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.35 - 0.42 1.66
AT5G46360 (KCO3)
5.0 1.49 1.16 - - -0.21 - -3.79 -1.26 -2.91 -1.21 - - - -1.1 - - - - - - - - - - -0.82 - - - - - - -4.24 - - -2.22 - - - 1.63 -3.21 - -1.45 -2.94
4.7 1.49 1.25 -4.0 - -1.88 -6.35 - - - -7.5 -2.17 - - -6.06 -0.21 -0.25 -3.99 - - - - - - - -4.28 -5.46 - -6.96 - - - - - - -4.94 - - -4.77 0.1 2.53 -5.91 -7.16 1.81
AT5G50820 (NAC097)
2.08 0.64 1.31 -2.43 - -0.05 -3.47 -3.42 -4.43 -5.01 -6.22 - - 1.24 -2.38 0.34 0.57 0.51 0.35 -0.61 0.52 0.97 0.13 2.43 0.98 0.46 0.55 0.74 -0.12 - 0.52 -7.81 0.13 -7.5 - -2.56 - - 1.59 -0.48 -0.7 -1.85 -0.65 -1.27
3.17 -5.81 -2.68 4.51 - 3.14 - - - - - -5.6 - - - - - - - - - - - - - -8.16 -10.07 - - -4.59 - - - - -6.53 -7.7 - - - 0.42 -1.35 - -0.32 -0.64
4.11 3.67 2.97 1.18 - -0.76 - - - - - - - -4.2 - -1.9 -3.23 -3.77 -3.29 -0.63 -6.06 - -2.41 - - -8.36 -6.75 - -5.26 - -4.0 - -4.57 - -3.82 -4.15 - - -9.11 -0.71 -3.9 -2.99 -1.58 -1.13
ATMG00900 (CCB256)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.