Heatmap: Cluster_485 (HCCA cluster)

View as: (view zlog-transformed or row-normalized)

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(Showing raw values)

Gene
Cambium and expanding xylem
Cambium
Expanding xylem
Expanding and mature xylem
Maturing xylem
Maturing xylem and dead early wood
Wood
Dead early and late wood
Dead early wood
Dead late wood
Vegetative shoots - needles
Vegetative shoots - stem
Vegetative shoots
Girdled twig - stem
Dried twig - needles
Girdled twig - needles
Needles
Needles - dawn
Needles - later afternoon
Needles - midday
Needles - night
Buds
Female flower
Male flower
Pineapple galls
Somatic germinants - abnormal type
Somatic germinants - normal type
Cell culture - H20 - 5 days
Cell culture - KI added - 5 days
Cell culture - KI added - 20 days
Cell culture - KI removed - 4 days
Cell culture - KI removed - 12 days
Cell culture - solid medium
0.33 0.15 0.37 0.39 0.21 0.11 3.11 0.78 0.19 0.95 26.59 2.72 3.95 4.27 87.94 71.59 4.53 61.58 49.17 74.5 54.62 4.98 5.33 36.16 2.53 6.04 5.92 17.8 10.07 10.92 14.31 15.88 11.29
0.01 0.22 0.11 0.18 0.14 0.0 0.05 0.03 0.11 0.43 0.44 0.1 1.21 0.0 10.48 4.17 0.09 0.15 1.32 0.47 1.79 0.19 0.0 0.89 0.2 0.24 0.12 1.55 2.33 2.28 1.31 1.82 0.32
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.87 0.81 16.14 0.58 46.5 30.64 0.29 6.89 4.32 8.16 12.1 1.15 0.42 0.58 8.81 0.14 0.14 5.57 1.15 0.6 7.0 2.45 0.46
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.6 0.12 0.1 0.46 2.96 2.71 0.52 2.0 2.56 1.89 2.69 0.09 0.18 0.08 0.27 0.02 0.05 0.52 0.08 0.0 0.52 0.2 0.0
0.0 0.0 0.04 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.88 0.41 1.31 0.0 17.54 4.81 3.92 2.5 4.06 2.79 2.96 0.35 1.72 0.04 2.81 0.25 0.18 4.14 0.26 0.05 3.68 1.68 0.07
0.0 0.09 0.01 0.02 0.03 0.0 0.42 0.0 0.0 0.0 6.79 1.31 4.97 0.36 19.51 8.66 2.2 7.75 6.53 6.18 8.7 1.01 0.79 2.74 6.84 2.15 2.25 9.56 3.18 2.7 8.24 9.23 1.99
1.38 0.78 1.78 1.89 2.22 1.35 1.59 1.53 1.65 1.09 31.23 35.55 21.3 2.88 93.54 115.77 9.94 32.81 44.61 36.49 47.66 32.41 7.16 0.95 34.94 16.01 17.65 8.17 4.13 5.35 12.21 12.48 4.65
0.03 0.02 0.0 0.0 0.01 0.0 0.02 0.01 0.0 0.14 45.79 2.94 24.39 3.22 420.96 449.02 0.97 143.28 119.79 135.0 124.35 5.57 0.0 1.45 30.61 11.99 12.77 27.08 0.42 0.18 17.3 16.53 0.4
0.15 0.79 0.84 0.29 0.41 0.0 5.04 0.0 0.0 0.18 13.29 15.4 19.05 6.05 131.1 40.25 5.57 13.97 15.53 16.54 22.45 5.94 10.53 8.21 29.9 9.6 8.84 23.29 20.02 9.94 27.05 11.4 16.46
0.0 0.81 0.0 0.0 0.0 0.25 5.7 0.0 0.0 0.27 149.97 23.56 19.73 52.12 138.67 78.68 4.21 96.96 97.87 112.74 98.77 12.08 29.93 4.35 48.14 29.29 30.07 54.65 17.49 8.97 43.74 55.81 12.79
0.0 0.01 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.11 0.07 0.28 0.0 1.95 0.86 0.03 0.45 0.35 0.47 0.51 0.11 0.04 0.08 0.0 0.09 0.06 0.62 0.19 0.07 0.35 0.19 0.04
0.02 0.0 0.01 0.0 0.01 0.0 3.05 0.0 0.0 0.04 2.57 1.15 1.4 0.17 8.96 10.2 0.41 3.06 4.77 3.84 3.81 0.15 0.09 0.0 1.21 0.13 0.21 0.64 0.11 0.08 0.71 0.98 0.07
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 8.29 1.53 6.25 0.0 39.89 56.77 1.51 10.1 14.92 14.92 15.15 1.09 0.62 0.14 10.39 0.92 1.91 7.25 1.91 1.26 10.86 9.76 0.64
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.13 0.61 0.26 0.41 0.0 2.33 2.39 0.03 1.01 1.57 0.81 1.26 0.04 0.0 0.0 0.12 0.17 0.17 0.04 0.15 0.01 0.01 0.0 0.01
30.42 30.82 40.88 57.52 41.44 62.2 48.65 29.37 28.29 63.42 34.71 59.85 48.43 61.36 375.66 39.21 102.34 24.15 27.09 24.24 32.81 71.44 39.4 15.02 54.93 55.13 67.83 62.96 47.24 73.42 74.5 73.55 41.65
0.06 0.1 0.0 0.01 0.03 0.0 0.08 0.03 0.0 0.16 13.51 0.67 2.13 0.41 53.58 63.54 1.26 21.8 27.02 26.74 24.45 1.07 1.1 0.1 1.48 1.96 2.0 5.39 5.77 3.14 4.49 3.35 5.39
0.64 1.46 0.05 0.01 0.03 0.0 0.73 0.0 0.0 0.0 1.38 3.77 5.27 7.03 122.69 6.34 3.06 3.79 4.04 5.21 5.01 10.81 4.78 3.5 2.46 9.03 8.25 6.6 10.24 13.39 14.08 6.49 9.28
8.46 6.91 26.68 31.55 23.42 12.84 11.21 21.18 11.9 19.76 278.58 77.73 195.08 48.14 74.03 225.04 42.71 149.47 100.39 98.49 86.42 99.17 123.65 58.14 222.88 51.58 44.73 83.85 107.43 103.94 90.61 96.47 70.42
0.0 0.0 0.0 0.0 0.0 0.0 0.22 0.0 0.0 0.0 5.95 0.43 4.07 0.36 2.11 5.35 1.06 3.11 2.47 2.9 2.46 0.57 0.75 0.36 3.05 0.13 0.19 1.01 0.86 1.31 1.05 1.17 1.28
0.06 0.16 0.03 0.01 0.02 0.0 0.28 0.0 0.0 0.0 4.88 5.51 4.97 0.43 16.24 33.66 0.5 3.54 8.72 4.74 4.61 5.69 0.73 0.87 6.72 2.49 2.31 4.16 2.66 1.94 3.56 5.13 3.11
0.1 0.29 0.25 0.25 0.41 0.26 0.28 0.14 0.1 0.04 3.62 1.84 0.88 1.37 4.11 4.42 0.35 2.37 2.04 2.31 2.14 1.08 0.35 0.46 1.33 0.67 0.66 2.4 0.76 0.45 1.49 2.01 0.84
0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.74 0.81 1.13 1.32 3.29 5.28 0.49 4.82 5.57 5.23 4.61 0.52 0.79 0.14 0.69 0.35 0.59 1.09 0.31 0.5 2.03 2.15 0.2
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.0 0.0 0.0 0.24 0.27 0.0 0.1 0.19 0.09 0.18 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0
0.0 0.01 0.0 0.0 0.0 0.0 0.01 0.01 0.0 0.0 8.4 1.62 2.57 1.51 8.96 7.63 1.2 7.83 9.56 10.99 9.34 1.79 0.75 0.83 1.3 0.92 1.39 0.27 0.04 0.21 0.56 0.48 0.04
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.11 0.07 0.03 0.0 0.94 1.76 0.06 0.45 0.92 0.47 0.62 0.04 0.07 0.0 0.3 0.0 0.01 0.22 0.0 0.0 0.13 0.04 0.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.12 1.0 11.46 0.0 32.22 34.75 0.73 12.55 7.61 6.92 9.48 0.46 1.19 0.32 9.55 0.0 0.0 0.0 0.0 0.09 0.05 0.0 0.0
0.0 0.0 0.0 0.0 0.0 0.0 0.02 0.0 0.0 0.0 9.18 0.79 0.58 1.54 3.96 8.6 1.59 9.37 12.78 11.8 12.58 0.84 0.31 0.46 0.94 3.67 3.33 5.06 1.66 1.18 5.48 5.05 1.77
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.72 0.05 1.31 0.02 2.69 5.84 0.13 2.65 1.55 1.28 1.61 0.12 0.0 0.14 1.18 0.18 0.23 0.18 0.0 0.0 0.1 0.06 0.0
0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.02 1.89 0.19 2.68 0.77 7.06 15.16 0.15 4.42 5.5 5.68 3.6 0.97 1.3 3.0 3.84 1.26 1.34 2.77 2.89 2.16 2.25 1.39 1.36
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.36 0.14 0.33 0.0 3.96 4.76 0.14 2.07 2.54 2.65 2.57 0.91 0.42 0.0 0.47 0.47 0.28 0.56 0.0 0.0 0.17 0.19 0.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0 0.0 5.1 0.33 2.13 0.0 6.44 24.93 0.38 7.0 9.3 3.66 6.18 0.12 0.57 0.0 0.96 0.24 0.62 4.86 0.19 0.1 4.13 3.7 0.31
0.0 0.08 0.0 0.0 0.0 0.0 0.12 0.0 0.0 0.0 17.9 7.69 1.21 3.0 16.51 19.11 1.47 10.15 16.8 12.78 11.94 2.85 0.68 0.12 3.49 0.81 1.26 2.55 2.78 3.35 4.35 4.51 2.74
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 4.89 0.86 3.19 0.07 28.64 30.12 0.89 6.16 9.44 9.48 10.06 0.57 0.11 0.0 4.09 0.85 1.31 5.96 0.79 0.99 7.15 7.88 1.06
0.0 0.0 0.07 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.89 0.36 1.78 0.0 6.75 7.78 0.62 1.89 2.02 2.18 2.41 0.08 0.24 0.0 1.65 0.13 0.16 1.54 0.09 0.0 2.71 0.25 0.12
0.04 0.09 0.06 0.08 0.02 0.0 0.68 0.4 0.32 0.12 7.04 2.32 0.75 0.36 7.26 10.47 0.37 3.43 7.17 3.48 5.9 0.51 0.29 1.69 0.59 0.31 0.39 2.7 1.49 1.52 2.68 3.56 0.55
0.71 0.39 0.79 0.75 1.78 1.13 6.21 1.75 1.93 4.29 28.58 15.85 11.41 11.42 79.97 59.75 3.69 29.4 36.77 37.25 40.89 27.55 8.31 6.54 15.7 6.59 5.62 33.97 3.91 2.12 28.69 20.08 2.11
0.25 0.21 0.08 0.04 0.03 0.06 1.84 0.15 0.01 0.04 410.23 120.13 466.52 144.36 1261.17 388.37 195.36 488.99 463.57 435.03 486.82 290.15 226.7 101.0 614.12 82.42 76.63 337.51 137.76 113.75 321.45 245.49 58.25
0.0 0.0 0.0 0.0 0.0 0.0 0.05 0.05 0.0 0.1 19.95 3.01 8.24 0.96 64.18 48.65 2.36 22.5 29.18 22.15 36.39 0.55 5.93 0.3 16.46 1.77 2.39 11.33 3.25 0.36 30.65 11.36 2.13
0.03 0.01 0.0 0.02 0.0 0.0 0.14 0.09 0.09 0.27 24.08 16.54 27.92 2.59 284.55 45.73 4.53 24.22 22.95 15.59 21.38 9.75 2.95 2.23 32.41 12.8 11.62 26.66 57.34 35.88 21.56 12.47 8.12
0.07 0.91 0.0 0.0 0.02 0.0 0.59 0.0 0.0 0.0 0.47 2.55 2.41 4.7 116.76 4.26 1.3 3.13 3.05 3.44 2.62 7.96 0.2 2.23 0.86 8.66 7.41 7.46 10.41 14.9 17.54 7.66 8.62
0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.02 0.0 2.4 0.1 2.56 0.0 8.48 10.27 0.46 2.17 3.92 2.54 2.85 0.0 0.33 0.0 2.66 0.15 0.23 1.15 0.19 0.02 1.2 0.23 0.07
0.0 0.04 0.0 0.04 0.0 0.0 0.19 0.0 0.0 0.0 2.66 0.31 2.38 0.98 6.03 3.25 0.79 1.04 2.58 0.92 3.4 0.66 0.22 0.54 2.36 0.83 1.26 3.69 1.17 0.86 2.89 3.02 1.06
0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.0 0.29 1.37 0.58 5.41 2.01 0.43 0.68 1.76 1.46 2.27 0.05 0.26 0.1 1.72 0.58 0.52 1.55 0.4 0.8 1.15 1.28 0.39
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.0 0.46 0.0 0.74 1.06 0.01 0.0 0.21 0.27 0.28 0.04 0.07 0.0 0.22 0.02 0.06 0.0 0.0 0.0 0.0 0.04 0.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.37 0.1 0.76 0.5 16.53 5.42 2.21 4.12 4.42 5.62 5.63 0.35 0.86 0.36 2.21 0.11 0.08 2.89 0.16 0.0 2.9 1.29 0.04
5.81 3.96 6.49 6.98 10.54 12.94 15.67 4.32 3.61 3.18 31.15 27.17 27.7 18.24 68.53 49.89 25.01 37.99 28.69 20.02 28.84 48.33 32.48 27.02 36.69 17.32 16.97 42.7 16.59 15.39 35.82 37.83 21.04
7.99 8.29 4.63 6.45 3.16 1.28 4.2 6.54 3.78 5.75 280.69 8.69 48.83 5.64 1411.47 423.03 23.48 349.27 417.94 323.75 466.59 4.63 58.64 7.99 72.87 170.06 166.04 542.86 406.66 197.58 401.18 347.19 104.88
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 14.2 0.29 3.6 0.82 11.37 8.84 1.63 7.63 6.11 5.32 7.9 0.4 0.33 0.04 3.94 0.85 0.74 2.73 1.67 2.58 4.7 3.95 2.02
0.13 0.08 0.26 0.41 0.65 0.4 0.74 1.54 1.55 2.13 6.34 6.49 0.4 4.25 6.97 5.14 0.92 7.45 7.24 6.52 5.49 1.06 1.65 0.28 0.59 2.81 3.41 4.55 3.24 0.73 3.83 1.95 0.39
0.0 0.03 0.0 0.0 0.01 0.0 0.02 0.0 0.0 0.0 1.02 0.0 0.41 0.0 2.14 0.61 0.38 0.68 0.73 0.92 0.51 0.12 0.02 0.24 0.42 0.54 0.64 1.22 0.59 0.5 1.25 1.22 0.43
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.37 1.01 0.0 0.18 0.0 7.47 7.94 0.11 5.91 5.1 1.53 3.35 0.14 0.04 0.0 0.27 0.06 0.15 0.14 0.05 0.09 0.11 0.3 0.12
0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.28 0.05 0.62 0.0 5.0 0.05 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.12 0.0 0.24 0.21 0.34 0.12 0.12 0.35 0.17 0.21
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.6 0.0 2.14 0.0 9.13 6.52 0.41 4.95 3.22 2.99 2.57 0.01 0.0 0.0 4.53 0.01 0.07 0.01 0.0 0.0 0.01 0.04 0.0
0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.04 0.29 1.19 0.0 2.04 2.46 0.07 1.11 0.47 0.18 0.37 0.1 0.0 0.0 1.28 0.0 0.0 0.25 0.0 0.0 0.16 0.0 0.0
0.0 0.03 0.0 0.0 0.0 0.0 0.17 0.0 0.0 0.0 10.47 0.88 0.81 0.0 51.85 56.07 1.17 19.22 32.47 39.18 33.57 0.62 0.48 0.0 0.69 1.99 1.69 7.69 6.72 4.24 6.92 4.75 7.42

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)